Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001624-TA|BGIBMGA001624-PA|IPR007087|Zinc finger,
C2H2-type
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 43 2e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 41 7e-04
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 38 0.006
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 36 0.025
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 35 0.044
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 35 0.058
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 34 0.077
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 34 0.10
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 33 0.18
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 33 0.18
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 32 0.41
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 31 0.72
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 31 0.72
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.72
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 30 1.3
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 30 1.7
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 29 2.9
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 29 3.8
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 29 3.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 3.8
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 29 3.8
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 29 3.8
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 3.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 28 5.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 28 6.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 28 6.7
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 28 6.7
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 8.9
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 27 8.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 8.9
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 27 8.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 8.9
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 43.2 bits (97), Expect = 2e-04
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 14/178 (7%)
Query: 186 NDLDLYIQHLQEKNCRSLA-C--DSCGNVYKLRRGLFSHLVMSSSCNHVQTDKTIQCKEC 242
N+L + I+ ++ + + C + CG Y L HL S+ D T K
Sbjct: 5 NELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAF 64
Query: 243 YQLIGSMYYKNHIRQCKPVKCTM--CNIIFHSVNDLTEH-QISRHPLSIEVKTCKFCYRQ 299
Y+ +K KP C C+ F++ L H ++ R P T + C +
Sbjct: 65 YRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYAC-TWEGC-DE 122
Query: 300 CVGK-VALMKHMTRVHRTELHLYKYECV--DCKTVFKHPQKLFSHFYMKHKDLEPYTC 354
C K L H++ H HL Y C DC+ F QKL +H H+ + Y+C
Sbjct: 123 CFSKHQQLRSHISACHT---HLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSC 177
Score = 39.9 bits (89), Expect = 0.002
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 3 GDANFETVLNIDNDLQYDAEVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKT--C 60
G FE + N ++ +A V CSIC +F L+ H+ +H T E RKT C
Sbjct: 184 GHEGFEKWSQLQNHIR-EAHVPS-CSICGRQFKTAAHLRHHVVLHQTT---LEERKTYHC 238
Query: 61 DFCECKYADVEEYAY--HIRDSHLAASKF-CQLCSRVFIDFNKYKQHTRKHYTAKSEYNA 117
CK + A HI H F C C F YK ++H E
Sbjct: 239 PMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKF----GYKHMLQRHL----ERGT 290
Query: 118 CSQCSALYINEMELERHEVE 137
C + YINE ++ +E
Sbjct: 291 CKKAHKPYINECGIKHDGIE 310
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 252 KNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKT--CKF--CYRQCVGKVALM 307
+NHIR+ C++C F + L H + E KT C C + AL
Sbjct: 195 QNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALK 254
Query: 308 KHMTRVHRTELHLYKYECVDCKTVFKHPQKLFSH 341
KH++ +H + + C C T F + L H
Sbjct: 255 KHISVIHEGNM---AFHCDSCGTKFGYKHMLQRH 285
Score = 35.9 bits (79), Expect = 0.025
Identities = 69/341 (20%), Positives = 119/341 (34%), Gaps = 35/341 (10%)
Query: 30 CNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHI-RDSHLAASKF- 87
C ++ P L+QHL+ HS ER CD+ C A + I + H F
Sbjct: 30 CGKKYSRPSLLEQHLRTHS-----NERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 88 CQL--CSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERHEVENHKHVDEG 145
C C F ++H H K C + +L H H H+
Sbjct: 85 CHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPY 144
Query: 146 VFLHNLYPFLSSVLNMKMSTFTKVKADDSDYSC---TVCDYKTNDLDLYIQ-HLQEKNCR 201
+ + + + YSC + ++ + +Q H++E +
Sbjct: 145 PCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVP 204
Query: 202 SLACDSCGNVYKLRRGLFSHLVMSSSCNHVQTDKTIQC--KECYQ-LIGSMYYKNHIRQC 258
S C CG +K L H+V+ + ++ KT C + C + S K HI
Sbjct: 205 S--CSICGRQFKTAAHLRHHVVLHQTT--LEERKTYHCPMEGCKKSFTRSSALKKHISVI 260
Query: 259 ----KPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFCYRQCVGKVALMKHMTRVH 314
C C F +H + RH +E TCK ++ + + + KH +
Sbjct: 261 HEGNMAFHCDSCGTKFG-----YKHMLQRH---LERGTCKKAHKPYINECGI-KH-DGIE 310
Query: 315 RTELHLYKYECVDCKTVFKHPQKLFSHFY-MKHKDLEPYTC 354
+H K + + V +K+ + +K+ Y+C
Sbjct: 311 GVAIHDQKEKELSSNLVSDVAKKIINEVTGHGYKEAREYSC 351
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 531 CNKYCYTKQNYKRHMALHSKNELQTCI--KCAQIFNSVSKLKEHVEKEHS 578
C+ YT+Q+ +RH+ +H K + C C + F+ +L+ H+ H+
Sbjct: 90 CDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHT 139
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 60 CDFCEC--KYADVEEYAYHIRDSHLAASKFCQL--CSRVFIDFNKYKQHTRKHYTAKSEY 115
C + EC KY+ H+R C CS+ F + K H R H K
Sbjct: 25 CPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 116 NACSQCSALYINEMELERHEVENHK 140
C A + + LERH +E H+
Sbjct: 85 CHYDGCDAQFYTQQHLERH-IEVHR 108
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 521 DNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTS 580
D++R C +C K +N RH A HSK E C C LK H+++ H+
Sbjct: 26 DSKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Query: 581 QLID 584
+I+
Sbjct: 86 SVIE 89
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 60 CDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRV--------FIDFNKYKQHTRKHYTA 111
C+FC + D +E H R+ H + C +C +V F +++ ++H K +
Sbjct: 247 CEFCNTHFYDDDELFKHCREKH----ERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302
Query: 112 KSEYNACSQCSALYINEMELERHEVENHKH 141
E + ++ E++L+ H+++ H H
Sbjct: 303 CRERECLERKFVVFGTEIDLKAHQLDEHPH 332
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/66 (28%), Positives = 25/66 (37%)
Query: 60 CDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACS 119
C C K+ E HIR H + F +C + F + +QH R H A
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHERLHVNASPRLACFF 484
Query: 120 QCSALY 125
Q S Y
Sbjct: 485 QPSGYY 490
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 524 RKVTCTKCNKYCYTKQNYKRHM-ALHSKNELQTCIKCAQIFNSVSKLKEHVEKEH 577
+ C +C+K ++ +RH+ +LH+ + CI C + F+ L++H E+ H
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQH-ERLH 473
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 522 NRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKE 576
N R C+ C K + + +RH LH+ + C+ C Q F + L H + E
Sbjct: 596 NYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKSE 650
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 393 DKKSENPFTPTCVLSEEDKRMCNMYSEVYSLPNQKSDASDYKSILNVLSATET 445
DK +NP P +L E M MY E + N AS Y++ ++ AT T
Sbjct: 514 DKLDQNPVHPAFILEGEPNNMVYMYPEGFEHTNASEHASAYQASVSQYYATAT 566
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 521 DNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKEH 577
D R K C K K++ +RH H+ ++ C C+ F L HV ++H
Sbjct: 14 DIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 521 DNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTS 580
D R T C K K++ +RH H + +C C + F L HV++ H
Sbjct: 23 DPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQK 82
Query: 581 QLIDTLKML 589
Q + +ML
Sbjct: 83 QNLSERRML 91
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 48 STVSTDTERRKTCDFCECKYADVEEYAYHIRDSHLAASKFCQL--CSRVFIDFNKYKQHT 105
ST + D R C C + +E HIR C C++ F ++ +H
Sbjct: 16 STKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHA 75
Query: 106 RKHYTAKSEYNACSQCSA 123
R H A S NA + +A
Sbjct: 76 RIHTNANSRRNAAAAAAA 93
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 521 DNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCI--KCAQIFNSVSKLKEH 572
D R C C K Y ++ RH+ H+ + C CA+ F+ +L H
Sbjct: 21 DAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 88 CQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERH 134
C LC++ F +H R H K C+ + EL RH
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 844 AHLLGDKKVDDIMQPLKSKYYKPKVISN-VENAFTKALEKANTPTH 888
AHL +K VD +M L K+ KP V SN + FT A K N P H
Sbjct: 6 AHLEINKVVDVVMS-LSKKFLKPSVASNQLRLLFTAAERKVNYPGH 50
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 256 RQCKPVKCTM--------CNIIFHSVNDLTEHQISRHPLSIEVKTCKFC--YRQCVGKVA 305
+Q PV+CT+ CN +F DL HQ + H + V C+ C R A
Sbjct: 567 KQIGPVRCTLQNRVTGEICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDA 626
Query: 306 LMKHMTRVH 314
L++H+ H
Sbjct: 627 LVRHLRVKH 635
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 501 SKPTPKAFPEKLFSNYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCA 560
S P+ FP L N D ++ +R V+ +K +C + + + + I
Sbjct: 111 SPSNPETFPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIP-----YFETSAKEAINVQ 165
Query: 561 QIFNSVSKLK-EHVEKEHSTSQLIDTLKMLLEKRK 594
+ F +V+KL E+++ + + D + + +E +K
Sbjct: 166 EAFETVAKLALENMDSDDIAADFTDPIHLDMESQK 200
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 31.1 bits (67), Expect = 0.72
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 488 TDEDDIPLVELTNSKPTPKAFPEKLFSNYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMAL 547
T + P +NSKP + K N +K ++ C C + ++ KRH+
Sbjct: 34 TSNANTPSSVTSNSKPVASSTAAKKDPNAPPQKV--KQYVCETCTRAFARLEHLKRHIRS 91
Query: 548 HSKNELQTCIK-------CAQIFNSVSKLKEHVEKEHSTSQ 581
H+ + TC + C + F+ L H +K H Q
Sbjct: 92 HTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNPQ 132
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 826 QDLIKLPDGTKLVTVNPLAHLLGDKKVDDIMQPLKSKYY---KPKVISNVENAFTKALEK 882
+DLI G LV VNP HL DD+++ +SK + KP + + A+ LE+
Sbjct: 115 KDLIYTYSGLFLVAVNPYCHL--PIYGDDVVRKYQSKQFKETKPHIFGTADAAYRSLLER 172
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 147 FLHNLYPFLSSVLNMKMSTFTKVKADDSDYSCTVCDY 183
F H L PF S + +TF K+ + D S TV D+
Sbjct: 576 FSHELTPFASQLAKQLRNTFVKLMQETMDESTTVDDF 612
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 27 CSICNAEFLDPGDLKQHLKVH 47
C +C A F+ DLK+HL++H
Sbjct: 475 CDLCKAGFVRHHDLKRHLRIH 495
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 506 KAFPEKLFSNYKDKKDNRRKV----TCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQ 561
+ F K+ S K ++ ++K C CNK Y++ Y HMA SK K
Sbjct: 46 EVFAGKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMA--SKKHRDNLSK--- 100
Query: 562 IFNSVSKLKEHVEKEHSTSQLIDTLKM 588
F S++K+ ++ E ++S TL M
Sbjct: 101 -FQRNSRIKK-LQSEDASSIASSTLSM 125
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 555 TCIKCAQIFNSVSKLKEHVEKEHSTSQLIDTLKMLLE 591
TC+ C + F S+ ++ H++++ TS DT LE
Sbjct: 260 TCLTCNREFKSLEAVRAHMQQKGHTSIAYDTEDEQLE 296
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 567 SKLKEHVEKEHSTSQLIDTLKMLLEKRKQGRTSTHELTMSQKFEQTIKRVKTDTTCTPAK 626
++ K +K S++ D+ + ++ +ST +T+ + R+KT + +P
Sbjct: 77 TRQKPTSKKSASSTSKHDSTGVKTSGKRSRESST--VTVDGDSHELPSRIKTQKSESPIP 134
Query: 627 ITVVKDGTSVQKFLENFSPEDSKK 650
V +DGT+ K E PE+++K
Sbjct: 135 QQVKRDGTTDAKNEETTKPENNEK 158
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 12 NIDNDLQYDAEVDVICSICNAEFLDPGDLK 41
N+++ L Y+A+VD+ IC + L PG LK
Sbjct: 124 NLNSFLYYEAKVDLRMLICMSFALQPGTLK 153
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 266 CNIIFHSVNDLTEHQIS-RHPLSIEVKTCKFCYRQCVGKVALMKHMTRVHRTELHLYKYE 324
C HS+ + +H + HP S V C + V + R H + L E
Sbjct: 1007 CLANLHSLENFIKHVLLLHHPKSCSVVKCLWASCDMVLPSEEFEMHLRGHLNNIRL-NCE 1065
Query: 325 CVDCKTVFKHPQKLFSHFYMKH 346
+CK F + + +F H H
Sbjct: 1066 VSNCKKCFSNYEDMFKHLQHSH 1087
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 184 KTNDLDLYIQHLQEKNCRSLACDSCGNVYKL 214
K N LY HL N +L C +C + YK+
Sbjct: 724 KLNIRTLYASHLSMANLENLQCAACQSTYKV 754
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 28.7 bits (61), Expect = 3.8
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 481 EYVIQDSTDEDDIPLVELTNS--KPTPKAFPEK---LFSN------YKD-----KKDNRR 524
E + ST+E +PL + N + +PK FPE LF+ Y D KK +R
Sbjct: 636 EKLTNASTEEVMLPLDMVVNELLEKSPKVFPEDSRLLFAEQSRHPKYTDIIQKLKKPSRE 695
Query: 525 KVTCTKCNKYCYT----KQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTS 580
K + T ++Y +Y+++ LH+ L + + +Q VS LK+ + + H+ S
Sbjct: 696 K-SFTSSSEYSLPFISPASDYQQNPLLHATKSLVSIHQQSQRGEMVSTLKQALSRPHTAS 754
Query: 581 QLI 583
++
Sbjct: 755 TVV 757
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 507 AFPEKLFSNYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSV 566
AFP + N DK ++R V+ + YC +K +H + + +F +V
Sbjct: 116 AFPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSN---MIHFEASAKENTNVTDLFETV 172
Query: 567 SKLKEHVEKEHSTSQLI-DTLKMLLEKRKQGRTST 600
S+L +E E S + D + LL + TS+
Sbjct: 173 SRLA--LENESSRDDFVNDFSEPLLLSKPLNNTSS 205
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 616 VKTDTTCTPAKITVVKDGTSVQKFLENFSPEDSKKTIVIESNISIKPVTSPFYREPFITM 675
V DTT T +++ + + F + E +K T+V++ N+ + P+T + F+++
Sbjct: 689 VIVDTTQT----LLIEPSFTAKIFARHVLLEKTKSTLVVKKNVDLDPITMTIFANRFMSI 744
Query: 676 KK 677
+
Sbjct: 745 SE 746
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 97 DFNKYKQHTRKHYTAKSEYNACSQCSALYINE 128
D+ K+++ K K + CS CS +INE
Sbjct: 344 DYRKFREDLWKKRHGKRKVYQCSNCSQTFINE 375
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 322 KYECVDCKTVFKHPQKLFSHFYMKHKDLEPYTC 354
+Y C +C F P L H Y H P+ C
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTY-SHTGERPFVC 498
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 154 FLSSVLNMKMSTFTKVKAD-DSDYSCTVCDYKTNDLDLYIQHLQEKNCRSLACDSCGNVY 212
F SS N +S +V A S + + YK + L +Q NCR++ +C +
Sbjct: 280 FESSSNNKSLSVLNRVIAALTSKKNDVLIPYKDSVLTTLLQDALGGNCRTIML-TCVSPC 338
Query: 213 KLRRGLFSHLVMSSSCNHVQTDKTIQCKECY 243
FS L S + ++ I CKE Y
Sbjct: 339 DFD-DTFSALRYSEAARRIKNISNINCKEAY 368
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 224 MSSSCNHVQTDKTIQ-CKECYQLIGSMYYKNHIRQCKPVKCTMC 266
+ S H Q D +Q C EC + H R C V C C
Sbjct: 265 LEQSIVHWQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFC 308
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 608 KFEQTIKRVKTDTTCTPAKITVVKDGTSVQKFLENFSPEDSKKTIVIESNISIKPVTS 665
K +T+ K C PA + V+KD V +E S + T + ++IK V S
Sbjct: 276 KIAETLTEAKVTLKCDPASLKVLKDMPKVSALVEP-SVDQDYNTEFSDLILAIKTVPS 332
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 564 NSVSKLKEHVEKEHSTS-QLIDTLKMLLEKRKQGRTSTHELTMSQKFEQTIKRVKTDTTC 622
++++ K EK+ S + + ++ ++ + T+ + K E + +K
Sbjct: 1281 SAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNESHVSLMKNWKLG 1340
Query: 623 TPAKITVVKDGTSVQKFLENFSPEDS 648
+PA +T+VK+ S E FSP DS
Sbjct: 1341 SPAFVTLVKEKNSSCLCGEEFSPRDS 1366
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 603 LTMSQKFEQTIKRVKTDTTCTPAK----ITVV-KDGT-SVQKFLENFSPEDSKKTI 652
L +S+ + ++RVK +C+P K IT++ D T S +KF ++ ED + I
Sbjct: 123 LELSENRQNVLERVKVFNSCSPPKPTNPITIIDNDKTHSFKKFYKSLVKEDEENGI 178
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 239 CKECYQLIGSMYYKNHIRQCKPVKCTMC--NIIFHSVNDLTEHQISRHPLS 287
C+EC ++ Y + KC MC NI+ S+ D T Q PL+
Sbjct: 627 CQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLN 677
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,215,881
Number of Sequences: 5004
Number of extensions: 180836
Number of successful extensions: 616
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 75
length of query: 906
length of database: 2,362,478
effective HSP length: 79
effective length of query: 827
effective length of database: 1,967,162
effective search space: 1626842974
effective search space used: 1626842974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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