Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001624-TA|BGIBMGA001624-PA|IPR007087|Zinc finger,
C2H2-type
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 44 4e-04
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 42 0.002
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 33 1.4
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 33 1.4
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 32 1.8
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 32 2.4
04_03_0631 - 18190195-18190686,18190866-18191066 31 3.1
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 31 4.1
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781... 31 5.5
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 30 7.2
01_01_0861 + 6710815-6713142 30 7.2
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 30 9.5
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 30 9.5
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 30 9.5
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 30 9.5
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 30 9.5
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 30 9.5
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 44.4 bits (100), Expect = 4e-04
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 25 VICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDF--CECKYADVEEYAYHIRDSHL 82
V C IC + L ++K+HL+ H V + TER K C F CEC +++ HI+ SH
Sbjct: 214 VQCDICGEKHLKK-NIKRHLRAHEEVPS-TERIK-CSFEGCECSFSNKSNLTKHIKASHD 270
Query: 83 AASKF-CQL--CSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMEL 131
F C+ C +VF YK H R ++ KS + +Q + ++E L
Sbjct: 271 QVKPFACRFTGCEKVF----PYK-HVRDNH-EKSSAHVYTQANFTEMDEQLL 316
Score = 36.3 bits (80), Expect = 0.11
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 22 EVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADV-EEYAYHIRDS 80
E D C C A F P LKQH++ HS ER C +C ++ + +++
Sbjct: 57 EGDHTCQECGASFQKPAHLKQHMQSHS-----DERSFICPLEDCPFSYIRKDHLNRHMLK 111
Query: 81 HLAASKFCQL--CSRVFIDFNKYKQHTRKHY-----TAKSEYNACSQ--CSALYINEMEL 131
H C + C R F ++H ++ + T + C + C+ ++ ++
Sbjct: 112 HQGKLFTCSMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQFVCKEEGCNKVFKYASKM 171
Query: 132 ERHEVENHKHVD 143
++HE E+H +D
Sbjct: 172 KKHE-ESHVKLD 182
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 41.9 bits (94), Expect = 0.002
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 22/131 (16%)
Query: 22 EVDVICSI--CNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDF--CECKYADVEEYAYHI 77
EV +CS C F+D G L++H VH ER+ C + C+ K+ D + H
Sbjct: 40 EVLFLCSYEGCGKTFVDAGALRKHAHVHG------ERQYVCHYAGCDKKFLDSSKLKRHF 93
Query: 78 RDSHLAASKF-C--QLCSRVF---IDFNKYKQHTRKHYTAKSEYNACS--QCSALYINEM 129
H F C + C +V +DFN K H + H + Y+ C +C+ + E
Sbjct: 94 L-IHTGEKNFVCPHEGCGKVLAFSLDFN-LKAHMKTH--SVDNYHVCKYPECARRFTQES 149
Query: 130 ELERHEVENHK 140
+L H + H+
Sbjct: 150 KLRAHIKQQHE 160
Score = 35.1 bits (77), Expect = 0.25
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 540 NYKRHMALHSKNELQTCI--KCAQIFNSVSKLKEHVEKEHSTSQL 582
N K HM HS + C +CA+ F SKL+ H++++H L
Sbjct: 120 NLKAHMKTHSVDNYHVCKYPECARRFTQESKLRAHIKQQHEKGGL 164
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 32.7 bits (71), Expect = 1.4
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 22 EVDVICSI--CNAEFLDPGDLKQHLKVHSTVSTDTERRKTCD--FCECKYADVEEYAYHI 77
E+ +CS C F+D L++H VH+ ER+ C C K+ D + H
Sbjct: 84 EILFLCSYENCGKTFVDVAALRKHAHVHN------ERQYICQEPGCGKKFVDSSKLKRH- 136
Query: 78 RDSHLAASKF-CQL--CSRVF-IDFNKYKQHTRKHYTAKSEYNAC--SQCSALYINEMEL 131
H F C C + F +DFN + H + H A Y+ C C + ++ +L
Sbjct: 137 HLIHTGQKDFICPHPGCGKAFSLDFN-LRSHLKTH--ALENYHVCPFPACGKRFTSDSKL 193
Query: 132 ERHEVENHK 140
+ H V+ H+
Sbjct: 194 KSH-VKGHE 201
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 293 CKFCYRQCVGKVALMKHMTRVHRTELH-LYK-YECVDCKTVFKHPQKLFSHFYMKH 346
CK C ++ L H T VH+ E+ L++ Y C C F + + L H KH
Sbjct: 465 CKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERHVQEKH 520
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 32.3 bits (70), Expect = 1.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 729 EGTDDHNYTEFDSTYYEESKECIPEVAQEEEVENHDERKHTIHVPHKIVIPKLP 782
EG D H T D ++ K P EVE H + K +HVP +I ++P
Sbjct: 481 EGRDSH-ITGLDLGDVDKEKPSEPLEVDSVEVEQHSQSKDGVHVPSQIQKDEVP 533
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 31.9 bits (69), Expect = 2.4
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 515 NYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEH 572
+++ K R+ C++C+K +YK H+ TC C ++F+ V EH
Sbjct: 132 HFRRKHSGHRQWACSRCSKAYAVHSDYKAHLKTCGTRG-HTC-DCGRVFSRVESFIEH 187
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 31.5 bits (68), Expect = 3.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 57 RKTCDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRVFIDFNKYKQHTRKHYTAKSEYN 116
+K CDF Y+D +YA + + + CQ R + ++ KQ++ TA++EY
Sbjct: 66 QKGCDFKLLGYSD-SDYA-GCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYV 123
Query: 117 ACSQCSA 123
A C A
Sbjct: 124 AAGSCCA 130
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 31.1 bits (67), Expect = 4.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 4 DANFETVLNIDNDLQYDAEVDVICSICNAEFLDPGDLKQHLKV 46
+ N ++ +N ++ A +IC +C A+F DL+ HLKV
Sbjct: 197 EQNKKSSVNPESQGTKAAAATLICRVCQAKFTCQSDLQSHLKV 239
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 286 LSIEVKTCKFCYRQCVGKVALMKHMTRVHRTELHLYKYECVDCKTVFKHPQKLFSHFYMK 345
LS+E+ +CK C +C + L H+T + + C CK + L H Y K
Sbjct: 264 LSLELYSCKVCSVKCTFERMLAYHLTGKKHLKQENLQLSCEICKLQCNSEKVLSDHRYGK 323
>08_02_1111 +
24377268-24377444,24377543-24377630,24378072-24378157,
24378358-24378511,24378723-24378883,24378964-24379632,
24379860-24380058,24380188-24380405,24380578-24380755,
24380859-24381358
Length = 809
Score = 30.7 bits (66), Expect = 5.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 398 NPFTPTCVLSEEDKRMCNMYSEVYSLPNQKSDASDYKSILNVLSATETEC 447
+P + C+L D +C++ S V+ L QKSD+SD KS L + S C
Sbjct: 753 SPLSFACML-RFDPLLCHV-STVHRLRWQKSDSSDEKSALQLASCGADHC 800
>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 30.3 bits (65), Expect = 7.2
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 255 IRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFCYRQCVGKVALMKHMTRV 313
I+ C + + ++ SV D+ E +SRH S +V+ K+ R G+V+L MT+V
Sbjct: 1044 IKDCSILAEDILRLLMLSVKDIAETTVSRH-RSDKVRKTKYVMRH--GQVSLSSAMTQV 1099
>01_01_0861 + 6710815-6713142
Length = 775
Score = 30.3 bits (65), Expect = 7.2
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 186 NDLDLYIQHLQEKNCRSLACDSCGNV-YKLRRGL--FSHLVMSSSCNHVQTDKTIQCKEC 242
ND D+Y+Q + N + CG+V + F S+S + + ++ C
Sbjct: 254 NDADIYVQLYPDGNVTAAKLGDCGSVLWSAPENWCDFDSYCGSNSFCIIPSKESFFESPC 313
Query: 243 YQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFCYRQC 300
Y Y N C+ N+ FH + + ++ ++ SIEV++ + C C
Sbjct: 314 YDFSDLGYLMNVSLNCRYNAPHKQNVSFHPM--VGVYKFPQNEWSIEVRSIRECEAAC 369
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 29.9 bits (64), Expect = 9.5
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 515 NYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEH 572
+++ K R+ C +C+K +YK H+ +C C ++F+ V EH
Sbjct: 133 HFRRKHSGHRQWACARCSKAYAVHSDYKAHLKTCGTRG-HSC-DCGRVFSRVESFIEH 188
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 548 HSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTS 580
+S + ++ C++C F++V L EH EK H ++
Sbjct: 241 NSGDLVEQCVQCPARFSTVGALIEHCEKSHQSN 273
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 29.9 bits (64), Expect = 9.5
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 520 KDNRRKVTCTKCNKYCYTKQNYKRHMALHSKN---ELQTC-IK-CAQIFNSVSKLKEHVE 574
K R V C C K+N+KRH +H + E C +K C F+ S L +HV+
Sbjct: 407 KSCHRHVVCDVCGTK-QLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVK 465
Query: 575 KEH 577
H
Sbjct: 466 AVH 468
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 29.9 bits (64), Expect = 9.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 239 CKECYQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSI 288
C EC + + + R + C+ C +F+ + L HQ RH + I
Sbjct: 219 CYECRAINVEPMSRRYPRPRELCACSQCGEVFNKADSLEHHQAIRHAVKI 268
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 86 KFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINE 128
K C S I+F ++ T Y AK E CS S++YI E
Sbjct: 475 KLCPPSSTETIEFQYWRTSTANLYKAKKE-RCCSAISSIYIEE 516
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 29.9 bits (64), Expect = 9.5
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 486 DSTDEDDIPLVELTNSKPTPKAFPEKLFSNYKDKKDNRRKVTCTKCNKYCYTKQNYKRHM 545
D+T+E + EL+N K P A ++ F + + +K T YKR
Sbjct: 518 DTTEEWSKKVAELSNVKDFPSAISDQDFPEIMPMRKGENRFVISKKKDRSLTSPQYKRRS 577
Query: 546 AL-HSKN 551
L H+ N
Sbjct: 578 VLEHADN 584
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,299,276
Number of Sequences: 37544
Number of extensions: 963073
Number of successful extensions: 2530
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2496
Number of HSP's gapped (non-prelim): 50
length of query: 906
length of database: 14,793,348
effective HSP length: 89
effective length of query: 817
effective length of database: 11,451,932
effective search space: 9356228444
effective search space used: 9356228444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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