Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001624-TA|BGIBMGA001624-PA|IPR007087|Zinc finger,
C2H2-type
(906 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 39 0.013
At5g54050.1 68418.m06722 DC1 domain-containing protein 38 0.030
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 36 0.092
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 36 0.16
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 35 0.21
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ... 34 0.37
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 33 0.65
At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ... 33 0.65
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ... 33 1.1
At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein ... 32 1.5
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 32 2.0
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 32 2.0
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 31 2.6
At3g20080.3 68416.m02543 cytochrome P450 family protein similar ... 31 2.6
At3g20080.2 68416.m02542 cytochrome P450 family protein similar ... 31 2.6
At3g20080.1 68416.m02541 cytochrome P450 family protein similar ... 31 2.6
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 31 2.6
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 31 2.6
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 31 2.6
At1g28050.1 68414.m03434 zinc finger (B-box type) family protein 31 2.6
At3g13190.2 68416.m01651 myosin heavy chain-related contains wea... 31 3.4
At3g13190.1 68416.m01650 myosin heavy chain-related contains wea... 31 3.4
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 31 3.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 3.4
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 31 3.4
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 31 4.5
At3g28770.1 68416.m03591 expressed protein 31 4.5
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 31 4.5
At1g32830.1 68414.m04046 hypothetical protein similar to At2g049... 31 4.5
At2g30280.1 68415.m03686 expressed protein 30 6.0
At5g53220.1 68418.m06616 expressed protein ; expression support... 30 7.9
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 30 7.9
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 30 7.9
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 39.1 bits (87), Expect = 0.013
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 18/166 (10%)
Query: 22 EVDVICSI--CNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDF--CECKYADVEEYAYHI 77
E+ +CS C F D L++H +H ER+ CD C K+ D + H
Sbjct: 76 EILFLCSYDGCGKTFFDVSALRKHSHIHG------ERQYVCDQEGCGKKFLDSSKLKRHY 129
Query: 78 RDSHLAASKFCQL--CSRVF-IDFNKYKQHTRKHYTAKSEYNAC--SQCSALYINEMELE 132
+ C C + F +DFN + H + H ++ Y+ C S C Y +E +L+
Sbjct: 130 LIHTGERNYICTYEGCGKAFSLDFN-LRSHMKTH--SQENYHICPYSGCVKRYAHEYKLK 186
Query: 133 RHEVENHKHVDEGVFLHNLYPFLSSVLNMKMSTFTKVKADDSDYSC 178
H H+ G P + +K + D Y+C
Sbjct: 187 NHVAAYHEKNGGGETPKYTPPAEKVLRTVKTPATVCGPSSDRPYAC 232
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 37.9 bits (84), Expect = 0.030
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 172 DDSDYSCTVCDYKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSCNHV 231
DD++ C C N Y + C + +C N+ + RR L + ++ S +
Sbjct: 316 DDANMRCRCCILAINGDPCY----KCMECDFILHKACANLPRKRRHLLHNHKLTLSSRRI 371
Query: 232 QTDKTIQCKECYQLIGSMYYKNHIRQCKPVKCTMCN---IIFHSVNDLTEHQISRHPLSI 288
D ++C C +Y I +C C N + SV++ H + +HPL
Sbjct: 372 DEDNFLECSAC-----RIYTDGFIYECLHEDCENKNAYDVRCSSVSEPFHHDLHQHPLYF 426
Query: 289 EVKTCKFC 296
+++ + C
Sbjct: 427 TLQSSRRC 434
>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
from (Arabidopsis thaliana)
Length = 1520
Score = 36.3 bits (80), Expect = 0.092
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 545 MALHSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTSQLIDTLKMLLEKRKQGRTSTHELT 604
M + + + I+ A N + E EK S S ID LK LL + TH+
Sbjct: 940 MVVKEQEAARVAIEEASSVNKEPVVVEDTEKIDSLSNEIDRLKGLLS------SETHKAD 993
Query: 605 MSQKFEQTIKRVKTDTTCTPA-----KITVVKDGTSVQKFLENFSPEDSKKTIVIESNIS 659
+Q Q+ V+ + C KI ++D SVQ+F E +S+ ++ + ++
Sbjct: 994 EAQHAYQSAL-VQNEELCKKLEEAGRKIDQLQD--SVQRFQEKVFSLESENKVLRQQTLT 1050
Query: 660 IKPVTSPFYREPFITMKKFTPE 681
I P T P T+ + TPE
Sbjct: 1051 ISPTTRALALRPKTTIIQRTPE 1072
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 35.5 bits (78), Expect = 0.16
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 172 DDSDYSCTVCDYKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLF-SH-LVMSSSCN 229
DD++ C C N Y + C + D+C N+ + ++ L H L +SS+C
Sbjct: 304 DDANMRCQCCILAINGDPCY----RCVECDFILHDACANLPRKKQHLLHKHKLTLSSTC- 358
Query: 230 HVQTDKTIQCKECYQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIE 289
+ + QCK YK H C+ K + SV + H + +HPL
Sbjct: 359 -IDGETYCQCKVYDVYTDGFIYKCHHEDCES-KYINYDARCSSVLEPFHHDLHQHPLYFT 416
Query: 290 VKTCKFC 296
+++ + C
Sbjct: 417 LQSSRRC 423
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 35.1 bits (77), Expect = 0.21
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 27 CSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTC--DFCECKYADVEEYAYHIRDSHLAA 84
C C AEF P LKQH++ HS ER TC D C Y + H+ +H
Sbjct: 68 CQECGAEFKKPAHLKQHMQSHS-----LERSFTCYVDDCAASYRRKDHLNRHLL-THKGK 121
Query: 85 SKFC--QLCSRVFIDFNKYKQHTRKHYT 110
C + C F +H +K+++
Sbjct: 122 LFKCPKENCKSEFSVQGNVGRHVKKYHS 149
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 511 KLFSNYKDKKDNRRK----VTCTKCNKYCYTKQNYKRHMALHSKNELQTCIK-----CAQ 561
K F+N + K + R + C C + K+N KRH+ H ++ IK C+
Sbjct: 256 KYFTNEECLKSHIRSCHQHINCEICGSK-HLKKNIKRHLRTHDEDSSPGEIKCEVEGCSS 314
Query: 562 IFNSVSKLKEHVEKEH 577
F+ S L++H++ H
Sbjct: 315 TFSKASNLQKHMKAVH 330
>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 373
Score = 34.3 bits (75), Expect = 0.37
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 537 TKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTSQLI 583
T+ + + + S +E+ C C +IF ++ L+ H+ +H+ S+LI
Sbjct: 109 TRIHQQTEFEISSSDEIFPCNSCGEIFPKINLLENHIAIKHAVSELI 155
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 33.5 bits (73), Expect = 0.65
Identities = 51/261 (19%), Positives = 100/261 (38%), Gaps = 31/261 (11%)
Query: 79 DSHLAASKFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALY-INEMELERHEVE 137
D + S+ C CS + ++K K + K T ++ +C+ Y I + + H+
Sbjct: 3326 DGYYLESEPCVACSSPDVPYSKMKLESLKSETKFTDNRIIVKCTGSYTIQSVTMNVHDAR 3385
Query: 138 NHKHVDEGVFLHNLYPFLS-SVLNMKMSTFTKVKADDSDYS-----------CTVCDYKT 185
K V +N P S L S + + K+ ++ T C++
Sbjct: 3386 KSKSVKVLNLYYNNRPVSDLSELKNNWSLWKRAKSCHLSFNQTELKVEFPIPITACNFMI 3445
Query: 186 NDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFS----HLVMSSSCNHVQTDK--TIQC 239
+LD + ++LQ + L C C + G+ S + C ++ + + C
Sbjct: 3446 -ELDSFYENLQALSLEPLQCPRCSRPVTDKHGICSNCHENAYQCRQCRNINYENLDSFLC 3504
Query: 240 KEC-YQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFCYR 298
EC Y G + KP + IF ++ + + + + E + Y+
Sbjct: 3505 NECGYSKYGRFEFN---FMAKP------SFIFDNMENDEDMKKGLAAIESESENAHKRYQ 3555
Query: 299 QCVG-KVALMKHMTRVHRTEL 318
Q +G K L+K ++ + TE+
Sbjct: 3556 QLLGFKKPLLKIVSSIGETEM 3576
>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 462
Score = 33.5 bits (73), Expect = 0.65
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 225 SSSCNHVQTDKTIQCKECYQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRH 284
++S +Q K C EC+ ++ Y R C C+ C +F + L HQ RH
Sbjct: 171 TTSFRAMQFRKLSGCYECHMIVDPSRYPISPRVCA---CSQCGEVFPKLESLELHQAVRH 227
Query: 285 PLS 287
+S
Sbjct: 228 AVS 230
>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 329
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 527 TCTKCNKYCYTKQNYKRHMALHSKNE 552
TC KCN T Q + HM+ H KNE
Sbjct: 245 TCPKCNGVFNTSQKFAAHMSSHYKNE 270
>At2g18490.1 68415.m02155 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 251
Score = 32.3 bits (70), Expect = 1.5
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 527 TCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLK 570
TC KCN T Q + HM+ H K+E T + AQ F + +K K
Sbjct: 170 TCPKCNSIFDTSQKFAAHMSSHYKSE--TNKERAQRFRARNKRK 211
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 31.9 bits (69), Expect = 2.0
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 18/125 (14%)
Query: 29 ICNAEFLDPGDLKQHLKVHSTV--STDTER-----RKTCDFCECKYADVEEYAYHIRDSH 81
IC + L QH++ + +++ER C+FC + E H+ H
Sbjct: 162 ICEQKLYTRAQLNQHIQTGDSEVDGSESERGGFAGHPMCEFCRNPFYGDNELYTHMSTEH 221
Query: 82 LAASKFCQLCSR-------VFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERH 134
C LC R + +++ + H R+ + + + ++ ++ NE EL+RH
Sbjct: 222 YT----CHLCQRSQPGQYEYYKNYDDLEIHFRRDHFLCEDDSCLAKKFTVFQNESELKRH 277
Query: 135 EVENH 139
H
Sbjct: 278 NAIEH 282
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 31.9 bits (69), Expect = 2.0
Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 12/195 (6%)
Query: 152 YPFLSSVLNMKMSTFTKVKADDSDYSCTVCDYKTNDLDLYIQHLQEKNCR-SLACDSCGN 210
+P L + ++T ++ ++ Y C VC Y H+ E+ R L C S
Sbjct: 411 HPLHPHPLTLNVAT-KELGNNEGVYHCNVCGRDGTGF-FYEHHIGERRFRLDLRCASIRE 468
Query: 211 VYKLRRGLFSHLVMSSSCNHVQTDKTIQCKECYQLIGSMYYKNHIRQCKPVKCTMCNIIF 270
++ + H + +S + +K ++C+ C G Y K + +C + C C
Sbjct: 469 PFEYQ--CHKHPLCIAS----ELEKKVRCQICK---GKSYSKLNCMECDYIICFRCATFP 519
Query: 271 HSVNDLTEHQISRHPLSIEVKTCKFCYRQCVGKVALMKHMTRVHRTELHLYKYECVDCKT 330
+ V + R + C GK+ +K + Y+C DC T
Sbjct: 520 YKVRYKHDSHFLRIRDGKKASDEPDWCEVCEGKIEEVKERESPWDKRREMRFYKCNDCCT 579
Query: 331 VFKHPQKLFSHFYMK 345
L YMK
Sbjct: 580 TLHVECLLGRDMYMK 594
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 31.5 bits (68), Expect = 2.6
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 239 CKECYQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFCYR 298
C EC ++H R C V C C +S+ ++ H ++ C +CY+
Sbjct: 42 CYECDAQFTVFNRRHHCRLCGRVFCAKC--AANSIPSPSDETKDSHEEPERIRVCNYCYK 99
Query: 299 Q 299
Q
Sbjct: 100 Q 100
>At3g20080.3 68416.m02543 cytochrome P450 family protein similar to
Cytochrome P450 93A1 (SP:Q42798) {Glycine max};
contains Pfam profile: PF00067 cytochrome P450
Length = 386
Score = 31.5 bits (68), Expect = 2.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 183 YKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSCN 229
++ ++LDL+ ++L +K + + D C KL ++M SC+
Sbjct: 21 FRADELDLFYENLLDKAMKKESVDICVEALKLSNNSICKMIMGRSCS 67
>At3g20080.2 68416.m02542 cytochrome P450 family protein similar to
Cytochrome P450 93A1 (SP:Q42798) {Glycine max};
contains Pfam profile: PF00067 cytochrome P450
Length = 523
Score = 31.5 bits (68), Expect = 2.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 183 YKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSCN 229
++ ++LDL+ ++L +K + + D C KL ++M SC+
Sbjct: 158 FRADELDLFYENLLDKAMKKESVDICVEALKLSNNSICKMIMGRSCS 204
>At3g20080.1 68416.m02541 cytochrome P450 family protein similar to
Cytochrome P450 93A1 (SP:Q42798) {Glycine max};
contains Pfam profile: PF00067 cytochrome P450
Length = 523
Score = 31.5 bits (68), Expect = 2.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 183 YKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSCN 229
++ ++LDL+ ++L +K + + D C KL ++M SC+
Sbjct: 158 FRADELDLFYENLLDKAMKKESVDICVEALKLSNNSICKMIMGRSCS 204
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 31.5 bits (68), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 553 LQTCIKCAQIFNSVSKLKEHVEKEHSTSQ 581
++ C +C F+SV+ L EHVEK H ++
Sbjct: 212 VEVCPQCGAKFSSVTSLVEHVEKTHERNK 240
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 511 KLFSNYKDKKDNRRK----VTCTKCNKYCYTKQNYKRHMALHSKNELQTCIK-----CAQ 561
K F+N + K + R + C C + K+N KRH+ H ++ IK C+
Sbjct: 168 KYFTNEECLKSHIRSCHQHINCEICGSK-HLKKNIKRHLRTHDEDSSPGEIKCEVEGCSS 226
Query: 562 IFNSVSKLKEHVEKEH 577
F+ S L++H++ H
Sbjct: 227 TFSKASNLQKHMKAVH 242
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 31.5 bits (68), Expect = 2.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 230 HVQTDKTIQCKECYQLIGSMYYKNHIRQCKPVKCTMC 266
H+ K CK Y L G+ + +H +QCK + C C
Sbjct: 457 HIDCCKVPNCKYRYCL-GTRMWLDHFKQCKSISCRTC 492
>At1g28050.1 68414.m03434 zinc finger (B-box type) family protein
Length = 433
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 173 DSDYSCTVCDYKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSCN 229
D+ C CD + + +L L K+ RS CD+CGN R +L++ C+
Sbjct: 24 DTAKLCLPCDQQVHTANL----LSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECD 76
>At3g13190.2 68416.m01651 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 31.1 bits (67), Expect = 3.4
Identities = 20/101 (19%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 542 KRHMALHSKN-ELQTCIKCAQIFNSVSKLKEH--VEKEHSTSQLIDTLKMLLEKRKQGRT 598
KR+M K+ +L + ++ V+K H E+E L+++LK+ L+ ++ +
Sbjct: 84 KRNMINDEKDLDLSSSVRVVTSELGVAKESIHRVAEEESELCMLMESLKLELQNVEKAHS 143
Query: 599 STHELTMSQKFEQTIKRVKTDTTCTPAKITVVKDGTSVQKF 639
E+ ++ Q I+ +K +T +++++++ + F
Sbjct: 144 ELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVF 184
>At3g13190.1 68416.m01650 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 31.1 bits (67), Expect = 3.4
Identities = 20/101 (19%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 542 KRHMALHSKN-ELQTCIKCAQIFNSVSKLKEH--VEKEHSTSQLIDTLKMLLEKRKQGRT 598
KR+M K+ +L + ++ V+K H E+E L+++LK+ L+ ++ +
Sbjct: 84 KRNMINDEKDLDLSSSVRVVTSELGVAKESIHRVAEEESELCMLMESLKLELQNVEKAHS 143
Query: 599 STHELTMSQKFEQTIKRVKTDTTCTPAKITVVKDGTSVQKF 639
E+ ++ Q I+ +K +T +++++++ + F
Sbjct: 144 ELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVF 184
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 590 LEKRKQGRTSTHELTMSQKFEQTIKRVKTDTTCTPAKITVVKDGTSVQ 637
LEKRK + T L+ ++ +++ + T T P+K TVV +S Q
Sbjct: 543 LEKRKPSASITSPLSTREELGESLPTMTTTTNAKPSKETVVGKSSSSQ 590
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 104 HTRKHYTAKSEYNACSQCSALYINEMELERHEVENHKHVD---EGVFLHNLYPFLSSV 158
H +H + + C+ + + ++ + E+ E + H+H+D EG+FLH L + SV
Sbjct: 615 HDHEHQSHSHNHEECNH-NHDHHSDHQPEKSEKKEHRHIDHNMEGIFLHVLADTMGSV 671
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 515 NYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEH 572
+++ K N ++ C +C+K + +YK H+ +C C ++F+ V EH
Sbjct: 134 HFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRG-HSC-DCGRVFSRVESFIEH 189
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 30.7 bits (66), Expect = 4.5
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 117 ACSQCSALYINEMELERHEVENHKHVDEGV--FLHNLYPFLSSVLNM------KMSTFTK 168
+CS C I+ + R +V N K +D GV + ++ PF + N + + +
Sbjct: 323 SCSLCPQYAIHSLCATRKDVWNGKELD-GVPEEVEDIEPFKRNDDNTITHFAHEHNLMSL 381
Query: 169 VKADDSDYSCTVCDYKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSC 228
K + C C Y + NC + + C N+ K +R S + C
Sbjct: 382 SKDGEESSLCGACVLPIGSYTFY--KCSKSNCSFILHEKCANISKKKRHFLSSEPL-ILC 438
Query: 229 NHVQTDKTIQCKECYQL 245
D C+ CYQ+
Sbjct: 439 FESIIDDDFLCRACYQM 455
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.7 bits (66), Expect = 4.5
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 497 ELTNSKPTPKAFPEKLFSNYKDKK-DNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQT 555
+L K + +K N+K KK +++++ K K K+ K+H S+ + +
Sbjct: 1057 DLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEED 1116
Query: 556 CIKCAQIFNSVSKLKEHVEKEHSTSQLIDTLKMLLEKR------KQGRTSTHELTMSQKF 609
++ + S K+ + E SQ + +K +K+ ++ T E + SQK
Sbjct: 1117 KKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKN 1176
Query: 610 EQTIKRVKTDTTCTPAKITVVKDGTSVQKFLENFSPEDSKKTIVIESN 657
E K K+ K +K+ S +K L+ + ED KK +E N
Sbjct: 1177 EVDKKEKKSSKDQQKKKEKEMKE--SEEKKLKK-NEEDRKKQTSVEEN 1221
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 30.7 bits (66), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 515 NYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEH 572
+++ K N ++ C +C+K + +YK H+ +C C ++F+ V EH
Sbjct: 137 HFRRKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTRG-HSC-DCGRVFSRVESFIEH 192
>At1g32830.1 68414.m04046 hypothetical protein similar to At2g04970,
At2g15200, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 707
Score = 30.7 bits (66), Expect = 4.5
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 723 ECNEKIEGTDDHNYTEFDSTYYEES-KECIPEV----AQEEEVENHDE 765
E EK+E D H+ + T +E+ K+C E+ +EE+VE HDE
Sbjct: 417 EEEEKVEYRDHHSTCNVEETEKQENPKQCDEEMEREEGKEEKVEEHDE 464
>At2g30280.1 68415.m03686 expressed protein
Length = 346
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 726 EKIEGTDDHNYTEFDSTYYEESKECIPEVAQEEEVENHDE 765
E +G+D+ +Y DS + K PE +EEE E+ D+
Sbjct: 252 EFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDDD 291
>At5g53220.1 68418.m06616 expressed protein ; expression supported
by MPSS
Length = 441
Score = 29.9 bits (64), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 486 DSTDEDDIPLVELTNSKPTPKAFPEKLFSNYKDKKDNRR 524
D DED+IP+ L N KPT + + + K + ++RR
Sbjct: 183 DDDDEDNIPISILKNLKPTNQEMSDLFDTPNKGESESRR 221
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 29.9 bits (64), Expect = 7.9
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 199 NCRSL--ACDSCGNVYKLRRGLFSHLVMSSSCNHVQTDKTIQCKECYQLIGSMYYKNHIR 256
NC L +C CG+ L H+ + C +C EC ++ + + ++R
Sbjct: 3 NCLQLNTSCVGCGSQSDLYGSSCRHMTLCLKCGRTMAQNKSKCHECGTVVTRLIREYNVR 62
Query: 257 QCKP 260
P
Sbjct: 63 AAAP 66
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 29.9 bits (64), Expect = 7.9
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 198 KNCRSLACDSCGNVYKLRRGLFSHLVMSSSCNHVQTDKTIQCKECYQLIGSMYYKNHIRQ 257
+NC + C N+ + +R + +L + N +D+T C C+Q Y +
Sbjct: 409 ENCDFILHQKCANLPRKKRHVCDNLPFTLVTNDT-SDET-SCDLCWQSFTGFRY-----E 461
Query: 258 CKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFC 296
C T+ ++ S+ + HQ +HPL ++ K C
Sbjct: 462 CLTRMVTL-DVRCGSIREPLVHQSHQHPLYFSKRSSKSC 499
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,953,103
Number of Sequences: 28952
Number of extensions: 879431
Number of successful extensions: 2841
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2796
Number of HSP's gapped (non-prelim): 71
length of query: 906
length of database: 12,070,560
effective HSP length: 88
effective length of query: 818
effective length of database: 9,522,784
effective search space: 7789637312
effective search space used: 7789637312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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