Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001623-TA|BGIBMGA001623-PA|IPR007087|Zinc finger,
C2H2-type
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 36 0.041
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 35 0.094
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 34 0.16
12_01_0468 + 3661177-3661626 32 0.50
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 32 0.66
12_02_0884 - 23986393-23987486,23988213-23988314,23988561-239886... 31 1.2
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023... 31 1.2
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 31 1.5
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 30 2.0
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 30 2.0
04_01_0042 + 473912-474058,474208-474349,474442-476264 30 2.0
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 29 3.5
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.5
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 29 4.7
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 6.2
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 29 6.2
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 29 6.2
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 28 8.2
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 28 8.2
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 35.9 bits (79), Expect = 0.041
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 14/162 (8%)
Query: 55 SKCETNHMCLICMRPQESKDSLLKHTKTDHLLSSPTARKVEREIFVCDH-CNGVFFNKFM 113
S CE+ IC P+E+ K+ + E+ C+ C F N
Sbjct: 345 SPCESKKE-FIC--PEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLEC 401
Query: 114 LTAHFYFKHIKDQTRGIQCVICNRYMHYKNTWFH--LNNVHMVNTKTACQI--CLNQFQT 169
L AH H R + C +C KN H ++ V + C + C F
Sbjct: 402 LKAHNKSCH-----RHVVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSK 456
Query: 170 TAKLNEHLKSHKPYLNCTICGYTASRDSYFTEHL-EKHRKSN 210
+ L++H+K+ +CG++ S+ +H+ + H KS+
Sbjct: 457 KSNLDKHVKAVHEQKRPFVCGFSGCGKSFSYKHVRDNHEKSS 498
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 34.7 bits (76), Expect = 0.094
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 198 YFTEHLEKHRKSNVTSVKNHKQYFTRMKKYHNYSLYSDDNEVPEAQISDNENSEVDI 254
+F L+ H + + V N+ + + Y+L+ D ++V E+ +S++EN D+
Sbjct: 373 FFVNTLKSHGRGKRSDVGNNGSFEPSLDPESEYALWEDSSDVKESDMSEDENRSPDL 429
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 33.9 bits (74), Expect = 0.16
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 194 SRDSYFTEHLEKHRKSNVTSVKNHKQYFTRMKKYHNYSLYSDDNEVPEAQISDNENSEVD 253
S DSY E++E+HR ++ Y + + DD EV + + +VD
Sbjct: 414 SEDSYEPEYVEEHRLKDLVKNSEFISYPISLNEKKIEKEICDDEEV---DAEEGKVEDVD 470
Query: 254 ISDKEIPETQISDIENTYIQINDDKEINTNIEM--EGNLTKECHVYAVQEEYE 304
+KE +I+++ + + N K ++ + E+ E KE V V EE E
Sbjct: 471 -EEKEKKGEKINEVSHEWHSSNKQKPLSDSKEITSENEEAKEGKVEDVDEEKE 522
>12_01_0468 + 3661177-3661626
Length = 149
Score = 32.3 bits (70), Expect = 0.50
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 232 LYSDDNEVPEAQISDNENSEVDISDKEIPETQISDIENTYIQINDDKEINTNIEMEGNLT 291
L+SD+ E E + + E DI ++E+ E + +IE ++ +++E+ ++ G
Sbjct: 58 LHSDEEEEEEEEEEEEVEEEEDIEEEEVVEEEEEEIEEEEVK-EEEEELREQVQEAGEEV 116
Query: 292 KE 293
E
Sbjct: 117 NE 118
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 160 CQICLNQFQTTAKLNEHLKSHKPYLN--CTI--CGYTASRDSYFTEHLEKHR 207
CQ C FQ A L +H++SH + C + C ++ R + H+ KH+
Sbjct: 62 CQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLKHQ 113
Score = 28.3 bits (60), Expect = 8.2
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 31/222 (13%)
Query: 1 MFRTHSDLVRTPPVQKASCDSEVFKCD-LCKACWLSETEADLHRKIAHFPELISKSKCET 59
M H + + + K++ + V + D C+ C S +K AH + + E
Sbjct: 33 MVAHHKEELDKSEIYKSNGEKVVHEGDHTCQECGAS------FQKPAHLKQHMQSHSDER 86
Query: 60 NHMCLICMRPQESKDSLLKHTKTDHLLSSPTARKVEREIFVC--DHCNGVFFNKFMLTAH 117
+ +C P E D + + DHL + K + ++F C D C F K + H
Sbjct: 87 SFIC-----PLE--DCPFSYIRKDHL--NRHMLKHQGKLFTCSMDGCGRKFSIKANMQRH 137
Query: 118 FYFKHIKDQT-----RGIQCVI--CNRYMHY--KNTWFHLNNVHMVNTKTAC--QICLNQ 166
H +D+T R C CN+ Y K ++V + + C C+
Sbjct: 138 VKEIH-EDETATKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKT 196
Query: 167 FQTTAKLNEHLKSHKPYLNCTICGYTASRDSYFTEHLEKHRK 208
F L H ++ Y+ C ICG + + HL H +
Sbjct: 197 FTNVECLRAHNQACHQYVQCDICGEKHLKKN-IKRHLRAHEE 237
>12_02_0884 -
23986393-23987486,23988213-23988314,23988561-23988642,
23989231-23989368
Length = 471
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 149 NNVHMVNTKTACQICLNQFQTTAKLNEHLKSH 180
+N+ ++ +T CQ+C F T+ L EH+ H
Sbjct: 169 DNLLLLPPETQCQMCSKVFSTSGSLREHMMMH 200
>07_03_1053 -
23600983-23601550,23601947-23602105,23602192-23602357,
23602959-23603502,23604506-23604679,23605740-23605985
Length = 618
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 194 SRDSYFTEHLEKHRKSNVTSVKNHKQYFTRMKKYH-NYSLYSDDNEVPEAQISDNENS-E 251
SRD F HL +S +++ + K++ T MK N +L SDD + + E++
Sbjct: 124 SRDFEFKPHLNSSSQSTASAINDPKKHETSMKNESLNTALSSDDMMIDNIPLCSRESTLA 183
Query: 252 VDIS 255
V+IS
Sbjct: 184 VNIS 187
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 177 LKSHKPYLNCTICGYTASRDSYFTEHLEKHRKSNVTSVKNHKQYFTRMKKYHNYSLYSDD 236
+K+ L IC +TA + +TEHL H S + + +++ ++K YSL S
Sbjct: 121 IKAIAAELGVEICEWTAPVPTLWTEHL--HANSGLGYISKLEEFENFVEKIRKYSLLSPT 178
Query: 237 N 237
N
Sbjct: 179 N 179
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 197 SYFTEHLEKHRKSNVTSVKNH-KQYFTRMKKYHNYSLYSDDNEVPEAQISDNENSEVDIS 255
SY +H + TS+ Q + ++ S+ D+E E ++SE D
Sbjct: 37 SYAESVAAEHARRRTTSIDEKISQALSGSRRGGKPSIPDGDSEGDEDDSEVEDDSEED-- 94
Query: 256 DKEIPETQISDIENTYIQINDDKE 279
DKE+ E +I D E+ + DD E
Sbjct: 95 DKEVVEGEIDDEEDEVEESEDDDE 118
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 235 DDNEVPEAQISDNENSEVDISDKEIPETQISDIENTYIQINDDKEINTNIE 285
DD EV E +I D E+ EV+ S+ + ++SD E ++ +E + +E
Sbjct: 94 DDKEVVEGEIDDEED-EVEESEDDDEGVEVSDEEVEELEEGKGEEKSDEVE 143
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 123 IKDQTRGIQCVICNRYMHYKNTW-FHLNNVHMVNTKTACQICLNQFQTTAKLNEHLKSHK 181
+ D +C CN H ++ + HL H V++K + +K E +
Sbjct: 305 VADDINSYECQQCNLTFHGQSAYAHHLITFHKVSSKR------RKSNKVSKFGEPVIGKD 358
Query: 182 PYLNCTICGYTASRDSYFTEHLEKHRK 208
C +C T S + H+ H K
Sbjct: 359 GKFECPVCNKTFEEQSRYFGHIGSHAK 385
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 201 EHLEKHRKSNVTSVKNHKQYFTRMKKYHNYSLYSDDNEVPEAQISDNENSEVDISDKEIP 260
E+LE+ R ++ VK H ++ + Y +Y + E +ISD+E+ ++D S +
Sbjct: 192 EYLEERRLKDL--VKKHSEFIS-------YPIYLWSEKTTEKEISDDEDDDIDDSKGKEK 242
Query: 261 ETQISDIEN 269
E I ++++
Sbjct: 243 EGDIEEVKD 251
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 29 CKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKH 79
CKA +T +LH+ + + + ++ +K E + +CL + + K ++ H
Sbjct: 603 CKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNKKKLTMTVH 653
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 208 KSNVTSVKNHKQYFTRMKKYHNYSLYSDDNEVPEAQISDNENSEVDISDKEIPETQISDI 267
K + T+ +HK+ F K ++ ++ + + Q ++ + ++ +EIPE++ SD+
Sbjct: 245 KEDDTAYLDHKESFPEDKVIAEHA--DEEVKAEDQQSKQADDMDAEVLQEEIPESKESDL 302
Query: 268 ENT----YIQINDDKEINTNIEMEGN 289
T ++D + +N +E N
Sbjct: 303 PETEQAEEASVDDQEALNQQPALETN 328
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 182 PYLNCTICGYTASRDSYFTEHLEKHRKSNVTSV-KNHK--QYFTRMKKYHN 229
PY IC ++ S+FT+ L++ K + V N+K Y T ++Y N
Sbjct: 308 PYKTAWICSQGSNDSSWFTQDLDEEGKQKLKDVDDNYKIYDYCTDSRRYPN 358
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 10 RTPPVQKASCDSEVFKCDLCKACWLSETEADLHRKIAH 47
R + AS + KC+LC A +L +++ + HR+ H
Sbjct: 515 RYSTIAMASGKNAGTKCNLCNARFLKDSDLEFHRRYYH 552
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 28 LCKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESK 73
L + WLS T L R + P L KSKC H+ L C PQ K
Sbjct: 817 LAQLRWLSITR--LERAMISKPML--KSKCFLRHLILSCTMPQYKK 858
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 25 KCDLCKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKHTKTDH 84
KC +C + + LH H E+ + + C +CM ++ L +H + H
Sbjct: 464 KCKICSQEFSDDQGLGLHWTEVHKKEVRWLFR---GYSCAVCMDSFTNRRVLERHVQEKH 520
Query: 85 LLSSPTARKVEREIFV-CDHCNGVFFNKFMLTAHFYFKHIKD 125
A+ ++ + C CN F N +L H H +D
Sbjct: 521 -----GAQYLQYSTLLRCISCNSNFLNTDLLWQHIVSDHSRD 557
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 262 TQISDIENTYIQINDDKEINTNIEM 286
T ++ +E T +++NDDK++ T I++
Sbjct: 658 TFVNTVECTVLEVNDDKDLGTTIDV 682
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 201 EHLEKHRKSNVTSVKNHK--QYFTRMKKYHNYSLYSDDNEVPEAQISDNENSEVDISDKE 258
E ++ K N T N K + K + Y+DD + Q S+NE + + KE
Sbjct: 763 EECKEDYKVNYTFTPNEKLEMNYVNDKAEESMLKYNDDYGFTDLQKSENEFGQHNFQVKE 822
Query: 259 IPETQISD 266
P+ + SD
Sbjct: 823 EPKNESSD 830
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.131 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,928
Number of Sequences: 37544
Number of extensions: 360665
Number of successful extensions: 1090
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 29
length of query: 306
length of database: 14,793,348
effective HSP length: 82
effective length of query: 224
effective length of database: 11,714,740
effective search space: 2624101760
effective search space used: 2624101760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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