GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001622-TA|BGIBMGA001622-PA|undefined
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    33   0.060
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    27   3.0  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   6.9  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 43  GYDDIANVISYYRLNNAQTDIENIFKKHTKGKGIKALTGSHRLIAQAI-WDLSKLFSLLT 101
           GYD + N +  + L N    ++ +F   T G+G   L    R+I     W   KL S L 
Sbjct: 32  GYDVLVNSMDDFNLENLLRPLQCVFICSTTGQGEMPLNMRERIITYRFNWASKKLDSRLR 91

Query: 102 VLGA 105
            LGA
Sbjct: 92  QLGA 95


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 18  KVIIDDKGICRSDFGKHYGWRSYD------NGYDDIANVISYY 54
           KV +D  GI ++DF +  G+  YD        Y  + N+I+YY
Sbjct: 514 KVTLDIAGIIKNDFLQQNGYSDYDRCCPLYKTYHMMRNMIAYY 556


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 11  GNHDQGIKVIIDDKGICRSDFGKHYG-WRSYDNGYDDIAN 49
           G   +G+K++I  KG C +D     G W  Y     +I+N
Sbjct: 571 GKDMKGLKILIKAKGKCTTDHISAAGPWLKYRGHLQNISN 610


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,771
Number of Sequences: 5004
Number of extensions: 27820
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 3
length of query: 279
length of database: 2,362,478
effective HSP length: 72
effective length of query: 207
effective length of database: 2,002,190
effective search space: 414453330
effective search space used: 414453330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)