GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001622-TA|BGIBMGA001622-PA|undefined
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0618 + 30400338-30400452,30400553-30400692,30400805-304010...    29   4.1  
06_01_0557 - 3959122-3959689,3960084-3960280,3960882-3961082,396...    28   9.6  

>02_05_0618 +
           30400338-30400452,30400553-30400692,30400805-30401044,
           30401157-30401693
          Length = 343

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 8   DGRGNHDQGIKVIIDDKGICRSDFGKHYGWRSYDNGYDDIANVISYYRLN 57
           DG G+ D+G     DD G+  +D G H+  +  D+  +D   +  ++  N
Sbjct: 295 DGAGS-DEGCSYYADDAGVLFADHGHHHHHQHADDDEEDGQQISCWWMWN 343


>06_01_0557 -
           3959122-3959689,3960084-3960280,3960882-3961082,
           3962300-3962383,3962667-3962783
          Length = 388

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 14  DQGIKVIIDDKGICRSDFGKHYGWRSYDN 42
           D G +  ++D  +C +D  K++G++S DN
Sbjct: 99  DIGGRQYMEDTHVCITDLAKNFGYQSVDN 127


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,898,930
Number of Sequences: 37544
Number of extensions: 176864
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 2
length of query: 279
length of database: 14,793,348
effective HSP length: 81
effective length of query: 198
effective length of database: 11,752,284
effective search space: 2326952232
effective search space used: 2326952232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)