GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001622-TA|BGIBMGA001622-PA|undefined
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.8  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 13  HDQGIKVIIDDKGICRSDFGKHYGWRSYDNGYDDIANVISYYRLNNAQTDIENIFKKHTK 72
           +D+ I++ I DK I    + KH     Y+N Y   + + +Y   +   T   +I+ KH +
Sbjct: 109 YDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTYVYTSTINTYVYTSTTNTYGVHIYDKHMR 168


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 16  GIKVIIDDKGICRSDFGKHYGWRSYDNGYD 45
           G K + ++KG+C+S F   Y    +D  Y+
Sbjct: 848 GCKDVCNEKGVCKSFFRSDYAVECFDEKYN 877


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,839,749
Number of Sequences: 59808
Number of extensions: 208510
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 3
length of query: 279
length of database: 16,821,457
effective HSP length: 81
effective length of query: 198
effective length of database: 11,977,009
effective search space: 2371447782
effective search space used: 2371447782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)