GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001622-TA|BGIBMGA001622-PA|undefined
         (279 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein ...    28   8.5  

>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 34  HYGWRSYDNGYDDIANVISYYRLNNAQTDIENIFKKH 70
           HYG+  Y+N      N +  + +N+    IEN+F KH
Sbjct: 358 HYGFEKYNN------NGVEEFLINSVNERIENLFVKH 388


>AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein
           protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 83  HRLIAQAIWDLSKLFSLLTVLGALANGYRTGHLSHCGSDIKVKLED 128
           +R + Q + D++++FSLLT+   +        L    +DI +K E+
Sbjct: 393 YREVRQGLVDMNQMFSLLTLKPKIVEAADAKRLEIVDNDISLKFEN 438


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,213,790
Number of Sequences: 27539
Number of extensions: 150698
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 2
length of query: 279
length of database: 12,573,161
effective HSP length: 80
effective length of query: 199
effective length of database: 10,370,041
effective search space: 2063638159
effective search space used: 2063638159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)