GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001619-TA|BGIBMGA001619-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
         (246 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.0  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    22   5.0  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    22   5.0  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      22   5.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      22   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 70 GTIQEIRVFKDKG 82
          G+  E++VFKD+G
Sbjct: 13 GSTDEVKVFKDEG 25


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 119 SGDPNNSQAQGQLGGTA 135
           SGDPNN    G+  G A
Sbjct: 175 SGDPNNVTIFGESAGAA 191


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 119 SGDPNNSQAQGQLGGTA 135
           SGDPNN    G+  G A
Sbjct: 177 SGDPNNVTIFGESAGAA 193


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 119 SGDPNNSQAQGQLGGTA 135
           SGDPNN    G+  G A
Sbjct: 175 SGDPNNVTIFGESAGAA 191


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 119 SGDPNNSQAQGQLGGTA 135
           SGDPNN    G+  G A
Sbjct: 177 SGDPNNVTIFGESAGAA 193


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 126  QAQGQLGGTAYSPFGTAYTASGVP 149
            QA  ++G    S    AYTA GVP
Sbjct: 1077 QAFNKVGAGPLSDDIKAYTAEGVP 1100


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,502
Number of Sequences: 317
Number of extensions: 2062
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 246
length of database: 114,650
effective HSP length: 55
effective length of query: 191
effective length of database: 97,215
effective search space: 18568065
effective search space used: 18568065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)