Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001619-TA|BGIBMGA001619-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 64 2e-11
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 58 9e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 51 2e-07
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 46 5e-06
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 46 5e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 5e-06
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 7e-06
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 44 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 6e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 39 8e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 37 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.005
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.010
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 35 0.013
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.017
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 34 0.017
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.022
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 33 0.038
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.038
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.067
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.12
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.16
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.16
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.27
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 0.27
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.27
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.36
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 30 0.36
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.63
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.63
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.5
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 3.3
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 27 3.3
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 5.8
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 7.7
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 64.1 bits (149), Expect = 2e-11
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPK-NELNSKPLTFDEVYNQSSA---------SNCTVYC 50
M GQ G R IR AT K A + +N P++ V S+A +N TV+
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 51 GGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQP 110
GGL+ ++EE ++ FQ FG I +++ KG F++F ++SA AI + +
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSR 367
Query: 111 VKCSWGKESGDPNNSQA---QGQLGGTAYSPFGTAYTASGVPPASYWYNTYP 159
++ SWG+ +P + A Q Q+ T P + + A +PP + ++ YP
Sbjct: 368 IRLSWGRNQ-NPIAAPALNYQSQVSQTTI-PATSLFPAMSLPPQAQ-FSPYP 416
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKES 93
S AS +++ G L+ + E + F + + + ++ D +GY F+RF+ +
Sbjct: 181 SKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDEND 240
Query: 94 ATHAIVAVHNTDINGQPVK 112
A+ + +P++
Sbjct: 241 QKSALAEMQGQICGDRPIR 259
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 58.4 bits (135), Expect = 9e-10
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNT 104
N TV+ GGL + L+E+ +Q FQPFG I I++ KG F+++S K +A AI +
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 105 DINGQPVKCSWGKESGDPNN-SQAQGQLGGTAY 136
+ ++ +WG + + SQ+Q Q+ +
Sbjct: 356 LVGTSHIRLAWGHNTLPVSALSQSQSQVSDEGF 388
Score = 30.3 bits (65), Expect = 0.27
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 28 NSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----- 82
+S PL +V S + T++ G L + +Q+ + ++V + K
Sbjct: 69 SSTPL--QDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSET 126
Query: 83 ---YAFIRFSTKESATHAIVAVHNTDINGQ--PVKCSWGKESGDPNNS 125
Y F++FS+ +A A++ +NT I G K +W G +N+
Sbjct: 127 LISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNN 174
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 83 YAFIRFSTKESATHAIVAVHNTDINGQPVKCS 114
Y F+RFS+++ HA++ + G+P++ S
Sbjct: 226 YGFVRFSSEKEQQHALMHMQGYLCQGRPLRIS 257
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKE 92
+Q S CTV+ G L+ + ++ + + F+ +GTI RV D KGY ++ F T E
Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Query: 93 SATHAIVAVHNTDINGQPVKCSWGK---ESGDPNNSQAQGQLGGTAYSPFGTAYTAS 146
+A A+ A +I+G+ V + P Q G G P T + +
Sbjct: 316 AAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGN 372
Score = 37.9 bits (84), Expect = 0.001
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 6 LGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKT 65
+ R + + + +P P+ + F + Q S + TV+ G L+ TE+ +
Sbjct: 329 IDGRMVNLDLSNPRPANPQPYAQQRAGNFGD---QLSEPSDTVFVGNLSFNATEDDLSTA 385
Query: 66 FQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
F G IQ IR+ D KG+ ++ FS +SA V ++ I G+P + +
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC-VEMNGHFIAGRPCRLDFSTPR 444
Query: 120 GDPNNSQAQGQLGG 133
+ +G GG
Sbjct: 445 TGGGSRGGRGGFGG 458
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 28 NSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIR 87
+S PL + + ++ +Y G LT E +++ F+ FG I+ + F++K AF+
Sbjct: 396 HSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVN 455
Query: 88 FSTKESATHAIVAVHNTDINGQPVKCSWGKE-SGDPNNSQAQGQL 131
F++ SA +AI + + + S+GK+ G+P + ++ +
Sbjct: 456 FTSLASAINAIDRIKQKK-GYENYRISYGKDRCGNPPRTNSKSDV 499
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAI 98
Q S + V+ G L G+TE+ +++ +PFG I +I++ ++ AF+ F +A A+
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAV 258
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATH--AIVAVH 102
N TVY G + T E + + G + IR ++K F+ F SA + +H
Sbjct: 322 NRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIH 380
Query: 103 NTDINGQPVKCSWGKESGDPNNSQAQGQLGGTA 135
I + +K WGK SG ++ A GG +
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGAS 413
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 46.0 bits (104), Expect = 5e-06
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 45 NCTVYCGGLT-TGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAV-H 102
N T+Y GG+T T EE++ + F +G I+ IRV +G AFI + + +A A A+ H
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITYLNEANAQFAKEAMAH 232
Query: 103 NTDINGQPVKCSWGKESGDPN-NSQAQGQ 130
+ + + + W + DPN SQA+ Q
Sbjct: 233 QSLDHDECLNVRWA--TTDPNPASQARNQ 259
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.0 bits (104), Expect = 5e-06
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 22 APKNELNSKPLTFDEVYNQSSAS--NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK 79
A +E S P V S + + ++Y G L +TE ++ + F G + IRV +
Sbjct: 54 AEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR 113
Query: 80 DK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPN 123
D GYA++ F E A+ ++ T I G+P + W + DP+
Sbjct: 114 DAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR--DPS 161
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
++ L + +E ++ F FGTI ++ D KG+ F+ ++T E A A+ ++
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 103 NTDINGQPVKCSWGKESGDPNNSQAQGQL-GGTAYSPFGTAYTASGVPPASY 153
+ G+P+ + + + SQ + Q+ + A+G+P Y
Sbjct: 426 QRMLAGKPLYVALAQRK-EVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQY 476
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
V+ L + + + TF FG I +V D KGY F+ F + ESA AI V+
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 103 NTDINGQPV 111
+N + V
Sbjct: 230 GMLLNDKKV 238
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHA 97
A+ VY L T +TE+ F FG I + + KD +G+ F+ ++ E A A
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 98 IVAVHNTDINGQ 109
+ +++ + G+
Sbjct: 318 VDELNDKEYKGK 329
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 45.6 bits (103), Expect = 7e-06
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 14 NWATRKPPAPKNELNSKPLTFDEVYNQSSASNCT--VYCGGLTTGLTEELMQKTFQPFGT 71
N +TR + N NS P D + T ++ G L +G++ + TF +GT
Sbjct: 554 NISTRSS-SESNNTNSWPTVGDATIENLTQHEPTHALWVGNLPSGVSATTVATTFSAYGT 612
Query: 72 IQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI--NGQPVKCSWGKESGDPNNS 125
+ IR+ K AF+ F + E+A H + ++ I PV S+ K + + S
Sbjct: 613 VSSIRMLSHKHSAFLNFDSVETAKHVLEELNGKRIFFGSDPVCISFAKVASSSSES 668
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/70 (24%), Positives = 39/70 (55%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 106
T++ GG+T + E +++ F+ FG++Q + + + + F++ +++A A VA+ N
Sbjct: 407 TLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPF 466
Query: 107 NGQPVKCSWG 116
++ WG
Sbjct: 467 ADTTIRTKWG 476
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ G+ + + E+ +Q+ F FGT+ +R+ ++ +G+ F+ FST E AT AI +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 102 HNTDINGQPVKCSWGKES 119
++ + G+ + K S
Sbjct: 163 NSQEFYGRVLNVQKAKRS 180
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-----DKGYAFIRFSTKESATHAI 98
TV+ G L +TE L+ F PFG I + + + D+ YAF+ F E A A+
Sbjct: 7 TVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 38.7 bits (86), Expect = 8e-04
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 7 GSRSIRTNWATRKPPAPKNELNSKPLTFDE---VYNQSSASNCTVYC---GGLTTGLTEE 60
GS S N T P + +S P+ V N SS V C L + +EE
Sbjct: 34 GSLSENDNSTTFIKPPLETASSSTPIPSSSSSGVLNPSSVRGKPVACLFVASLNSSRSEE 93
Query: 61 LMQKT----FQPFGTIQEIRVFKD---KGYAFIRFSTKESATHAIVAVHNTDINGQPVKC 113
+ T FQ +G + ++V KD + Y+F++F + A+ A+ NT ++G+ ++
Sbjct: 94 ELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRI 153
Query: 114 SWGK 117
K
Sbjct: 154 ERAK 157
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/48 (18%), Positives = 26/48 (54%)
Query: 57 LTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNT 104
+T++ + +P+G ++++ D+ +RF ++ A A A+ ++
Sbjct: 173 ITKKDIDNLLEPYGEVEDVTEIPDQSAFLVRFVYRDEAIAAYTALKHS 220
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.1 bits (82), Expect = 0.002
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 33 TFDEVYNQSSASNC--TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFST 90
T D Q S N TV+ G L T + + G +Q+ +K F+ F T
Sbjct: 394 TSDRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIR-HGGLQDFHYIPEKHICFVTFIT 452
Query: 91 KESAT--HAIVAVHNTDINGQPVKCSWGKESG 120
+A H +A ++G+ +K WGKESG
Sbjct: 453 YSAANAFHDYLAEEEVLLHGRRIKVGWGKESG 484
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRF 88
++A++ V+ G L + E+ +++ F FG I+ I++ K AF+ F
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF 341
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 57 LTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
LT+E ++ F+PFG I+ + + +D KG+ +I++ SA +A+ ++ D+ G+ +
Sbjct: 351 LTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNM 410
Query: 112 KCSWGKE 118
+ G +
Sbjct: 411 RVCLGND 417
Score = 29.5 bits (63), Expect = 0.47
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 29 SKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KG 82
S+P ++ TV+ L LT + F+ G +++ ++ +D KG
Sbjct: 223 SRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKG 282
Query: 83 YAFIRFSTKESATHAIVAVHNTDINGQPV 111
A++ F E + A +A+ + G PV
Sbjct: 283 VAYVEF-CHEDSVQAAIALSGKRLLGLPV 310
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y G L G E+ M+ F FG + +R+ ++ K YAFI F + + A +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 102 HNTDINGQPVKC 113
HN + G+ ++C
Sbjct: 167 HNYLLYGKLLQC 178
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 62 MQKTFQPFGTIQEIRV-----FKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
++ F FG ++EI++ + G+AF+ +++A A+ +++ T+I+G+P+ W
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.7 bits (76), Expect = 0.013
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEI-RVFKD-----KGYAFIRFSTKESATHAIVAV 101
++ G L + E ++ TF G + + +V +D KGY F+ + + E+A AI A+
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 102 HNTDINGQPVKCSWG---KESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPP 150
+N + +P+ S+ + G+ + A+ +L A S +PP
Sbjct: 161 NNQFLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQSTLPP 212
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.017
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 39 NQSSASNC--TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKG--------YAF 85
N+ S C ++Y G L + + + F+PFG + + K+K +AF
Sbjct: 11 NKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAF 70
Query: 86 IRFSTKESATHAIVAVHNTDINGQPVKCSW 115
I F K SA +AI +++ + G +K +
Sbjct: 71 ITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 34.3 bits (75), Expect = 0.017
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 22 APKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK 81
AP S + D ++ + + T+ L+ EE ++ F+ FG IQ + + KDK
Sbjct: 178 APHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK 237
Query: 82 ------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGK 117
G+AF+ + ++ A A + N ++C + K
Sbjct: 238 ETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 279
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.9 bits (74), Expect = 0.022
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 9 RSIRTNWATRKPPAPKNELNSKPLTFD--------EVYNQSSASNCTVYCGGLTTGLTEE 60
RS + T K P NE+ SK D + + ++ GG+ TEE
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEE 261
Query: 61 LMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCS 114
+ F FG + + + DK G+ F+ + ESA A ++ I+G+PV+
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE-NESAVEATMSQPYITIHGKPVEVK 320
Query: 115 WGKESGDPNNSQAQGQLG 132
+S + Q G
Sbjct: 321 RATPKASLRDSHDRHQHG 338
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL T++ ++ F+ FG + + V +D +G+ F+ F + +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 102 HNTD 105
H+ D
Sbjct: 225 HHLD 228
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 33.1 bits (72), Expect = 0.038
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 52 GLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAV--HNTDINGQ 109
G+ L + ++K F+ +G ++ + AF+ F T+ SA A A N I G
Sbjct: 218 GVEDELADYKIRKHFEQYGPLKSVVCSHRAKCAFVNFKTRSSAEIAAAASPDGNVVIEGF 277
Query: 110 PVKCSWGK 117
+K WGK
Sbjct: 278 RLKVQWGK 285
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.1 bits (72), Expect = 0.038
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 34 FDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIR 87
F ++Q + + +Y G L L E+ + F FG +I + +D KG+AF++
Sbjct: 19 FSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
Query: 88 FSTKESATHAIVAVHNTDI 106
+ + S A+ + N +
Sbjct: 79 YEDQRSTVLAVDNMTNVKL 97
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.067
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEI-----RVFKDKGYAFIRFSTKESATHAIVAV 101
T+Y G G+ + F+PFG + R + +AF+ + A A V
Sbjct: 8 TLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEV 67
Query: 102 HNTDI--NGQPVKCSWGKE---SGDPNNSQAQGQLGGTAYSPFGTAYTASGVP 149
H + G ++ W K+ SG + + + GG + G + S P
Sbjct: 68 HGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSP 120
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHN 103
+N VY L +T + ++ F FG I +V + G I F+ + A AI ++N
Sbjct: 174 NNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGR--IVFAQRYFAEQAINEMNN 231
Query: 104 TDINGQPVKCSWGK 117
++G ++ SW +
Sbjct: 232 FPLHGVRIQLSWAR 245
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-----KDKGYAFIRFSTKE 92
Y S+C +Y G L ++ + F G++ R+ + KG+ ++F +
Sbjct: 273 YPHGPCSDC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENEN 331
Query: 93 SATHAIVAVHNTDINGQPVKCSWGKESGD-PNNSQAQGQLGGTAYSP 138
A +I ++ G+P++ S+ + P L AY+P
Sbjct: 332 DAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 79 KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+ +G + S+ + A HAI +HNTD G+ ++
Sbjct: 221 RSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLE 254
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 57 LTEELMQKTFQPFGTIQEIRVFKD---KGYAFIRFSTKESATHAIVAVHNTDINGQPVKC 113
+ + +++ F +G + +++ K +G AF+ F E+A+ A+ + + G+P+
Sbjct: 41 MLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMI 100
Query: 114 SWGKESGD 121
+ K D
Sbjct: 101 QYSKSKSD 108
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 30.3 bits (65), Expect = 0.27
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 48 VYCGGLTT-GLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 106
++ G L T L++ + K F+ +G + +I V K Y F++F T E A+ A +
Sbjct: 365 LFLGHLNTKSLSKRNLWKVFKIYGPLAQI-VLK-ANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 107 NGQ 109
GQ
Sbjct: 423 RGQ 425
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 30.3 bits (65), Expect = 0.27
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
SNC VY G L+ TEE + F G I+ I + D+ G+ F+ + + A +
Sbjct: 31 SNC-VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
Query: 98 IVAVHNTDINGQPVKC--SWGKESGDPNNSQAQG 129
+ + T ++ + ++ G E G A G
Sbjct: 90 LKYISRTSLDERIIRADLDHGYEEGRQYGRGASG 123
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
+C VY G + + EE + F+ G ++ ++ D KGY F + +A A+
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 99 VAVHNTD 105
++N D
Sbjct: 64 RNLNNYD 70
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 52 GLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
G+ TEE ++ F FG ++ + + D KGYA I ++T E A A+
Sbjct: 16 GVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVA 100
T++ L+ E +++ F +G I+ IRV ++K GYAF+ F + A A
Sbjct: 101 TMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 101 VHNTDINGQPV 111
+NG+ +
Sbjct: 161 SAGLMLNGRRI 171
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.63
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDIN 107
+E ++ F FG I +V +DK YAFI F KES A + N I+
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GYAFIRFSTKESATHAIVAVH 102
++ G L + +E + + F + ++ + +V +D+ G+ F+ F + A +
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 103 NTDINGQPVKCSWGKESGDPN 123
I +PVK S PN
Sbjct: 92 GKYIGSRPVKLSRATSDVKPN 112
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ LT E+ ++ F PFG ++++ + D KG+A+I F + A A + +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 102 HNTDINGQ 109
G+
Sbjct: 385 DAKPFQGR 392
Score = 26.6 bits (56), Expect = 3.3
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 42 SASNCTVYCGGLTTGLTEELMQKTFQPF-GTIQE-IRVFKD---------KGYAFIRFST 90
S T+Y L +E QK F+P G + IR D G+ F+ F
Sbjct: 615 SLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
Query: 91 KESATHAIVAVHNTDINGQPVKCSWGKESGD 121
K SA A+ A++ ++G ++ + D
Sbjct: 675 KASAVAAMHAMNGFVLDGHKLEIKLSHQGVD 705
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIV 99
V+ G L EE + + F G+I +R+ +D KG+A+I+F A++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 81 KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
+G AF F E A + ++ +ING+ ++ W ++
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQ 280
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein
Mmf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 24 KNELNSKPLTFDEVYNQSSASNCTVYCGG 52
K +NS L+ YNQ+ +N +YC G
Sbjct: 39 KTPINSPKLSSAGPYNQAIKANGVIYCSG 67
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV-FK---------DKGYAFIRFSTKE 92
A + V+ G L+T + ++ F+ GT++++ + F+ G AF+ F+ +E
Sbjct: 41 ADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQE 100
Query: 93 SATHAIVAVHNTDINGQPV 111
AI ++ ++ + +
Sbjct: 101 DVDKAIETLNGKTLDDREI 119
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 122 PNNSQAQGQLGGTAYSP---FGTAYTASGVPPASYWY-NTYP 159
P + + +G+ T Y P FGT++T+S PP S +TYP
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYP 173
>SPBP16F5.06 |||ribosome biogenesis protein
Nop6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-------KGYAFIRFSTKE 92
+Y GGL++ + ++ F FG++ + + + +A++ F T E
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 993,255
Number of Sequences: 5004
Number of extensions: 34981
Number of successful extensions: 151
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 60
length of query: 246
length of database: 2,362,478
effective HSP length: 71
effective length of query: 175
effective length of database: 2,007,194
effective search space: 351258950
effective search space used: 351258950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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