Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001619-TA|BGIBMGA001619-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
(246 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 53 2e-07
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 49 4e-06
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 48 7e-06
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 47 1e-05
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 45 7e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 45 7e-05
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 43 2e-04
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 43 3e-04
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 42 4e-04
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 40 0.001
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 40 0.001
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 40 0.003
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 40 0.003
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 39 0.004
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 38 0.006
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 38 0.010
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 37 0.018
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 36 0.023
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 36 0.031
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.031
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.054
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.072
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 34 0.13
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 34 0.13
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 34 0.13
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 33 0.22
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.29
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 31 0.67
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 0.67
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 31 0.88
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 31 1.2
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 30 1.5
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 29 3.6
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 29 3.6
SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 28 6.2
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 8.2
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
M+ +G + ++TNWA RK N +KPL +D+V++QSS N TVY G L + +
Sbjct: 574 MDSVTIGGKQVKTNWAARK----NNPTQTKPLVWDDVFHQSSQLNTTVYVGNLPPDVKDY 629
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFI 86
+Q+ F +G+I E +VF DKGYAFI
Sbjct: 630 ELQQMFSQYGSILETKVFADKGYAFI 655
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 59 EELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+++ T +E+RV KD KG+ F+ F +E A AI + + I G+ VK
Sbjct: 526 DDIFSYTVPDLFVAREVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVK 585
Query: 113 CSWGKESGDPNNSQ 126
+W +P ++
Sbjct: 586 TNWAARKNNPTQTK 599
Score = 35.5 bits (78), Expect = 0.041
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK---DKG-YAFIRFSTKESATHAIVA 100
N ++Y G L T+EL+ F + ++ DKG Y F+ F T A A
Sbjct: 368 NRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFR 427
Query: 101 VHNTDINGQPVKCSW-----GKESGDPNN 124
+ + + +K +W G + GD NN
Sbjct: 428 MDQRTVMDKKLKVNWATNHPGMKRGDTNN 456
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
M+ + + + ++ NWAT P + + N+ + ++ G L +
Sbjct: 428 MDQRTVMDKKLKVNWATNHPGMKRGDTNN---------------HFHIFVGDLAENVDNA 472
Query: 61 LMQKTFQPFGTI 72
L++KTF+PFG I
Sbjct: 473 LLRKTFEPFGEI 484
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
S TVY G L LT + K F+ +G + ++ + +DK G AFI F ++SA +A
Sbjct: 8 SKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNA 67
Query: 98 IVAVHNTDINGQPVKCSWGKESG 120
+ AV+ + G+ +KC+ K++G
Sbjct: 68 VAAVNKKQMFGRTIKCTIAKDNG 90
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y G L +TE +++ F+PFGT+ +++ D KGY F++F E+A A+ +
Sbjct: 244 LYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQM 303
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTAS 146
+ ++ G+P+K E GD S A L Y G +S
Sbjct: 304 NGFELAGRPLKIGPVTERGD---SSAYSFLDDEEYEKGGVELNSS 345
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVA 100
TV+C L + +++ F G + ++R+ D KG A+I F T +SA +
Sbjct: 147 TVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEF-TDKSAVPLAIG 205
Query: 101 VHNTDINGQPV 111
+ + G P+
Sbjct: 206 LSGQKLLGAPI 216
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKES 93
+ + N +Y GL + EE ++ F+PFG I +V KD +G F+RF +
Sbjct: 106 SSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCE 165
Query: 94 ATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYT 144
A AI ++N + G VK + K + PN+ Q L SP G A T
Sbjct: 166 AQTAIDDLNNKTLPGTNVKLT-VKFANPPNSRQPAMPLSPALTSPLGRALT 215
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
++ GL T + K F P+G I I + DKGY F+ S E A HAI ++ T +
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNGTPQH 333
Query: 108 GQ 109
G+
Sbjct: 334 GK 335
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKE 92
N +S + + +++E ++K F G + ++ +D+ GYAF+ + +
Sbjct: 20 NGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPD 79
Query: 93 SATHAIVAVHNTDINGQPVKCSWGKES 119
A A+ ++ + + +K S+ + S
Sbjct: 80 DANKAVREMNGARLQNKTLKVSFARPS 106
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 50.0 bits (114), Expect = 2e-06
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 25 NELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYA 84
N+L + + + + S T+Y GGL +TE+ ++ F FG ++ I + + A
Sbjct: 283 NKLLKQAQSMPMLDTPTDRSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCA 342
Query: 85 FIRFSTKESATHAIVAVHNTDI-NGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAY 143
F+ F+++ +A A N I G+ +K WGK G A G+ GG +P
Sbjct: 343 FVCFTSRAAAEAAADRSFNKLILKGRRLKIMWGKSQG---QQPAPGRQGGHTLTPVPGLP 399
Query: 144 TASGVPPA 151
A PPA
Sbjct: 400 GALPAPPA 407
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 42 SASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAV 101
S + T++ G L +T++ +Q F+ GTI I + +G A+I+ +E A A+ +
Sbjct: 537 SVCSSTIWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKREDAYRALDKL 596
Query: 102 HNTDINGQPVKCSWGKESG 120
N + G VK +W G
Sbjct: 597 RNIKLYGNSVKLAWAPAKG 615
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 48.0 bits (109), Expect = 7e-06
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG LG R+I+ P N + PL E + Q + +Y + L E+
Sbjct: 163 MNGVLLGGRNIKVG-------RPSNVPQAAPLI--EQFEQEAKKYARIYIASVHPDLLED 213
Query: 61 LMQKTFQPFGTI------QEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCS 114
++ F+ FG + +E K KGY FI + ++SA AI +++ D+ GQ ++
Sbjct: 214 DIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVG 273
Query: 115 WGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
+ P S A + T P GT A+ + A+
Sbjct: 274 ---RAITPPTSSAMAAINTT---PPGTLPAAAAIAAAA 305
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV------FKDKGYAFIRFSTKESATHAIV 99
C VY G + L EE ++ F PFG I +I + K KG+AF+ + E+A A+
Sbjct: 102 CRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALE 161
Query: 100 AVHNTDINGQPVKCSWGKESGDP 122
++ + G+ +K G+ S P
Sbjct: 162 QMNGVLLGGRNIKV--GRPSNVP 182
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
VYCG L TE+ ++ + FG ++E+ FK+ GYA++ F + A A+ A++N++ +
Sbjct: 5 VYCGRLPATATEKDLENLVKVFGKVREVD-FKE-GYAYVVFKENKDADRAVAALNNSEFH 62
Query: 108 GQPVKCSWGKE 118
G + KE
Sbjct: 63 GAKILMEKAKE 73
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
VY L+ +TEE +++ + +G + ++ KD YAF+ F+ ++ A AI +++
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKD--YAFVHFTERDHALKAIEETDGKEMD 388
Query: 108 GQPVKCSWGKESGDPNNSQAQGQLG 132
G ++ S K N + +GQ G
Sbjct: 389 GLKIEASLAKPQ-PGNKDRQRGQSG 412
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 106
TV+ G+ GLTEE++++ F G ++ + K++ F+ F T E+A AI ++ +
Sbjct: 111 TVFVSGI--GLTEEILKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGLKV 168
Query: 107 NGQPVKCSWGKESGDPNNSQAQGQLG 132
++ S + PN + GQ G
Sbjct: 169 QHVHIRVSMARR--QPNMDEMHGQGG 192
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 44.8 bits (101), Expect = 7e-05
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 30 KPLTFDEV--YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTI-QEIRVFKD------ 80
KP+ ++ +N++ ++ G L T + E+L+ TF FG I Q ++ +D
Sbjct: 82 KPIRVNKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNS 141
Query: 81 KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWG--KES-GDPNNSQAQGQLGGTAYS 137
KG+AFI F++ +++ AI A++ + +P+ S+ KES G+ + S A+ L A +
Sbjct: 142 KGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESKGERHGSAAERLL--AAQN 199
Query: 138 PFGTA 142
P A
Sbjct: 200 PLAQA 204
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
+ T+Y GGL ++E L+ + F G + + + KD+ GY F+ F +E A +AI
Sbjct: 12 DATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAI 71
Query: 99 VAVHNTDINGQPVK 112
++ + G+P++
Sbjct: 72 KVMNMIKVYGKPIR 85
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 44.8 bits (101), Expect = 7e-05
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 1 MNGQWLGSRSI---RTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGL 57
+NG+ +G R + R + K E+ K E N+ N +Y L +
Sbjct: 169 LNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKR---QERINRFQGVN--LYIKNLDDPI 223
Query: 58 TEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
+E +++ F P+GTI +V KD KG+ F+ FS+ E AT A+ ++ + +P+
Sbjct: 224 DDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPL 282
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFST--KESATHAI 98
++Y G L +TE ++ + F G++ IRV +D GYA++ F ++A AI
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAI 73
Query: 99 VAVHNTDINGQPV 111
V +N + V
Sbjct: 74 ARVDGMLLNDKKV 86
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
VY + +E M++ G I ++V D KG+ F+ F T E A A+ ++
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
Query: 103 NTDINGQ 109
+I G+
Sbjct: 171 GKEIGGR 177
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV------FKDKGYAFIRFSTKE 92
++ S +Y G + G E ++K F+ FGT+ IR+ + KGYAF+ F+ E
Sbjct: 91 DEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDE 150
Query: 93 SATHAIVAVHNTDINGQPVK 112
A A +HN + G+ +K
Sbjct: 151 VAKIAADTMHNYMMFGRLLK 170
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNT 104
NC VY G L G TE+ +++ F+ +G +++I + Y F+ F A A+ +
Sbjct: 2 NCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINL--KNNYGFVEFEDDRDADDAVYECNGK 59
Query: 105 DINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSP 138
++ G+ + + G +S ++ G Y P
Sbjct: 60 EMLGERILVEHSR--GGARSSSSRPSRGRDKYGP 91
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG-----YAFIRFSTKESATHA 97
A++ V+ GGL+ +TE ++ + F FG ++++ + +D+ F+ F + + A A
Sbjct: 521 AASFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAA 580
Query: 98 IVAVHNTDINGQPVKCSWGKE 118
V ++ DI G+ V+ + KE
Sbjct: 581 NVGMNGCDILGKIVETKYAKE 601
>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 45 NCTVYCGGLTTGLT-EELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHA 97
+CT+Y GGLT EE + + F +G I++IR+ K AF+R+ ++ +A A
Sbjct: 246 SCTLYVGGLTLHTKLEEWLWEEFGEWGEIEDIRIIPKKNIAFVRYKSRLNAEFA 299
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 14 NWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQ 73
+W T+ P + E+ + L D+ Q + T+ L+ E +Q+ F+P G I
Sbjct: 151 HWTTKCPYKDQLEVIHQQLKEDDGSGQHETA--TIRVTNLSEETRESDLQELFRPLGPIS 208
Query: 74 EIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGK 117
I + KDK G+AFI F +E A AI + + + W K
Sbjct: 209 RIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWAK 258
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV------FKDKGYAFIRFSTKESATH 96
A+ Y GGL + E+++ F PFG I ++++ K +G+ F+ F E
Sbjct: 2 ANKRVAYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAA 61
Query: 97 AIVAVHNTDINGQPVKCSWGK 117
AI ++ +++ G+ ++ + K
Sbjct: 62 AIDNMNESELFGRTIRVNLAK 82
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+ +++ F FG + ++ + K++ + + +F+ K+SA AI +H D+ G +K
Sbjct: 351 DHVLKDVFSRFGNLIDVWMMKERNFGYAKFAAKQSADAAIQGLHGHDVLGMKLK 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 59 EELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
+E ++ F+ FG I+ +++ +D KGY +++F +A A+
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMAL 111
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVA 100
C V+ G + L E+ + F+ G I E+R+ D +GYAF+ +++K+ A +
Sbjct: 74 CEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRCVKT 133
Query: 101 VHNTDI 106
++N +I
Sbjct: 134 LNNYEI 139
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESAT 95
EV + + ++ V L ++ + +++ F G ++ ++ + G A + ++TKE A
Sbjct: 6 EVPSTTPQTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLR-AGMAEVVYTTKEDAV 64
Query: 96 HAIVAVHNTDINGQPVKC 113
A HN +++GQP++C
Sbjct: 65 TAYARYHNRNLDGQPMQC 82
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESAT 95
EV + + ++ V L ++ + +++ F G ++ ++ + G A + ++TKE A
Sbjct: 211 EVPSTTPQTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLR-AGMAEVVYTTKEDAV 269
Query: 96 HAIVAVHNTDINGQPVKC 113
A HN +++GQP++C
Sbjct: 270 TAYARYHNRNLDGQPMQC 287
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 79 KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQG---QLGGTA 135
+ +G+ F+ F +KE AI D++G+P+K + K GD +QG + GG
Sbjct: 135 RPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGDSGGGGSQGGGYRSGGGG 194
Query: 136 Y 136
Y
Sbjct: 195 Y 195
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 106
++Y + ++E ++ F +G I+++R +D Y F+ F+ +ESA AI ++ I
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRD--YGFVYFAKRESAVQAIDGINGAYI 60
Query: 107 NGQPVKCS 114
+G ++ S
Sbjct: 61 DGCKLEVS 68
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 34 FDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKES 93
+ + + C ++ G L EE M++ F+ +G + E+ + K+KG+ FIR T+
Sbjct: 41 YSSMKERKFTGRCRLFVGNLID-CDEEEMKEMFKKYGEVAEVFINKEKGFGFIRLDTRLH 99
Query: 94 ATHA 97
A A
Sbjct: 100 AEAA 103
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 LTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAI 98
+T EL+++ F FG ++ V D KG+ + FS K +A +A+
Sbjct: 137 VTNELLEQAFSQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNAM 183
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG-----YAFIRFSTKESATHAIV 99
TV+ GGL + E ++ + F G I IR+ K KG + +RF KES A++
Sbjct: 352 TVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENARKFCHLRFGAKESVDTAVL 409
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 49 YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVH 102
Y G L+ + E+ +++ F + +++V D+ G+ F+ F +KE AI
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVV-DVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 103 NTDINGQPVKCSWGKESGD--PNNSQAQG-QLGGTAY 136
D +G+P+K + + G+ S+A G + GG Y
Sbjct: 67 GQDFDGRPMKVNQAQPRGERGAGGSRAGGYRSGGGGY 103
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKESA 94
N+S++++C VY G L + E+ + F +G I ++ + +G +AF+ F A
Sbjct: 254 NRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDA 313
Query: 95 THAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
A+ + +G ++ + + G GG
Sbjct: 314 EDAVKGRDGHEFDGYRIRVEFPRGGSGRGGGGGGGGGGG 352
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIR-VF-----KDKGYAFIRFSTKESATHAIVA 100
+V+ G + +EE +++ F G + R VF K KGY F + +E+A A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 101 VHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPA 151
++ ++NG+ ++ + ++ SP+G P A
Sbjct: 86 LNGYELNGRALRVDSAASEKNKEEIKSMEMTARPEVSPYGQPVPPEEAPEA 136
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEI---RVFKDKG--YAFIRFSTKESATHAIVAV 101
T++ G L TG++ + ++ +F+ FG + ++ R + +G YAF++F+ + A A A+
Sbjct: 238 TLFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAM 297
Query: 102 HNTDINGQPVKCSWGK 117
I +K +G+
Sbjct: 298 QGQCIGRNHIKIGYGR 313
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-----KDKGYAFIRFSTKESATHAIVAV 101
T+Y + + ++ F P+G I+++ + K KG+ ++ + ESA A+
Sbjct: 64 TIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRALAGT 123
Query: 102 HNTD 105
H D
Sbjct: 124 HIID 127
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 35.9 bits (79), Expect = 0.031
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 29 SKPLTFDEVYNQSSAS-------NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-- 79
SKPL YN + S + +V+ GGL +G EE ++ F+ FG ++ +R+ +
Sbjct: 56 SKPLVAVSRYNSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTF 115
Query: 80 ---DKGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
+ Y F+ F K+ V + ING+ V
Sbjct: 116 LGYSRNYGFVLF--KDDGPSKEVLKKSHVINGKTV 148
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
+Y GGL + TE+ +++ F+ FG I+ ++ FI ++ + T + +I
Sbjct: 159 IYVGGLPSHFTEQTVREHFKKFGVIEAVK--------FIENTSVGAKTGXXXXEEDQEIL 210
Query: 108 GQP--VKCSWGKESGD 121
G P V+ GKES +
Sbjct: 211 GCPVTVRARSGKESNE 226
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 35.1 bits (77), Expect = 0.054
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 51 GGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAI 98
GGL G+ E + + F +GT++ + + + Y+F+ + + +A +A+
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERVVMLPQRSYSFVSYKSHNNALNAM 102
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 34.7 bits (76), Expect = 0.072
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 45 NCTVYCGGLTTGLTEELMQKT----FQPFGTIQEI---RVFKDKGYAFIRFSTKESATHA 97
N T+Y L + +E ++K+ F FG I +I + K +G AF+ F SAT+A
Sbjct: 6 NQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNA 65
Query: 98 IVAVHNTDINGQPVKCSWGKESGD 121
+ ++ +P++ + K D
Sbjct: 66 LRSMQGFPFYDKPMRIQYAKGKSD 89
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDK--------GYAFIRFSTKESATHAIVAVHNT 104
L TE ++++TF FG + E V + K G+ F++F+ A A+ ++
Sbjct: 254 LAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAK 313
Query: 105 DINGQPVKCSW 115
I G+PV W
Sbjct: 314 KILGRPVAVDW 324
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVA 100
TV+ L+ T++ + F+ FG I +V D KG AF+++ + ES T + A
Sbjct: 417 TVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAA 476
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 34.7 bits (76), Expect = 0.072
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 59 EELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
E+ + + F +G I+ + V D KGYA + + T + A A+ A++ ++ GQ +
Sbjct: 306 EDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNIS 365
Query: 113 CSWGKESGDPNNSQA 127
W G S++
Sbjct: 366 VDWAFIRGPSKKSRS 380
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHA 97
SN +Y L T+ + +TFQPFGT+ +VF DK + F+ + SA +A
Sbjct: 277 SNLFIY--HLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNA 334
Query: 98 IVAVHNTDINGQPVK 112
I ++ I + +K
Sbjct: 335 IQHMNGFQIGAKRLK 349
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 18 RKPPAPKNELNSKPLT--FDEVYNQSSASNCTVYCGGLTTG-LTEELMQKTFQPFGTIQE 74
+K +P + N L ++ N + C ++ G L T + + +++ F G +
Sbjct: 16 QKSKSPDRDRNRAKLESRYETNKNDPHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLG 75
Query: 75 IRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
+ + G F++F T++ A A+ H ING+ +
Sbjct: 76 CSLHANFG--FVQFETEKGADEAVAKEHGRIINGKKI 110
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GYAFIRFSTKESA 94
++ G TE ++ F+ +G ++E ++ +DK GYAFI F ++E A
Sbjct: 10 IFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQEVA 61
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTK 91
++ C Y G L + E +Q F + + +++V D+ G+AF+ F +K
Sbjct: 222 FDLKMGEECKCYIGNLDFKVNEADLQDRFSRYDVV-DVQVISDRETQRPRGFAFVTFGSK 280
Query: 92 ESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
++ AI + + +G+ +K + + + G G
Sbjct: 281 KNMEDAINELDGQEFDGRSMKVNQARSREQRGGGRGGGYRSG 322
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 79 KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQG---QLGGTA 135
+ +G+ F+ F +++ AI D++G+P+K + + G+ +QG + GG
Sbjct: 48 RPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGERGGGGSQGGGYRSGGGG 107
Query: 136 Y 136
Y
Sbjct: 108 Y 108
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
VY G L G E+ ++K F +G + + GY F+ F + A A+ + +
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNGKKML 64
Query: 108 GQ 109
G+
Sbjct: 65 GE 66
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESA 94
++ GG+ ++ ++K F FG I+E V KD KGY F+ +T ++A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAA 64
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-KGYAFIRFSTKESATHAIVAVHNTDI 106
VY G + ++ +++ F+ FG ++++ V ++ G+AF F + A A+ + I
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYI 63
Query: 107 NGQ--PVKCSWGKESGDPNNS 125
GQ V+ + G G P +
Sbjct: 64 CGQRARVELAKGPSRGRPRQA 84
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 62 MQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+ +TFQPFGT+ +VF DK + F+ + SA +AI ++ I + +K
Sbjct: 278 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLK 334
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK 81
SN +Y L T+ + +TFQPFGT+ +VF DK
Sbjct: 229 SNLFIY--HLPQEFTDADLMQTFQPFGTVISAKVFIDK 264
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 35 DEVYNQSSAS-NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIR 87
D+ N S A ++ G L TE P+G I+ + + + KGY F+
Sbjct: 101 DKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVE 160
Query: 88 FSTKESATHAIVAVHNT 104
++T+E+A A + NT
Sbjct: 161 YATRENAMQAKQQLLNT 177
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK----DKGYAFIRFSTKESATHAI 98
++ GGL TEE ++ F +GTI + + K +G+ F+ + + +S +
Sbjct: 52 IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVL 106
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG---YAFIRFSTKESATHAIVAVHN 103
T++ G + T +++ F+ +G + ++ + K G YAF++F+ SA A +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKMDR 309
Query: 104 TDINGQPVKCSWGK 117
+ VK +GK
Sbjct: 310 EYVGRNRVKVGFGK 323
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-KGYAFIRFSTKESATHAIVAVHNTDI 106
+Y G L +++ F+ FG + ++ V ++ G+AF+ + A A+ + ++
Sbjct: 6 LYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANV 65
Query: 107 NGQPVKCSWGKESG 120
+ ++ + G
Sbjct: 66 CDRTIRVEFSNNRG 79
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 39 NQSSAS-NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTK 91
N+S A CT+Y + +E + F G + ++ + D KG+ F+ +T+
Sbjct: 267 NKSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQ 326
Query: 92 ESATHAIVAVHNTDINGQPVKCS 114
E A +AI ++ +P++ S
Sbjct: 327 EEAQNAIQTLNGFMYTNKPLQSS 349
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 42 SASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESAT 95
+ +Y + L E +K F+ +G I R+ +D KG F+ + K A
Sbjct: 129 NTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQ 188
Query: 96 HAIVAVHNTDING 108
AI ++ T G
Sbjct: 189 AAISSLSGTFFPG 201
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKESATHAIVAVH 102
TV+ L +T E++ F G I+ IR+ D G YA+I F+ ++ A+
Sbjct: 73 TVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSAL-QYS 131
Query: 103 NTDINGQPVK 112
G+P+K
Sbjct: 132 GAIFGGKPIK 141
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 17/122 (13%)
Query: 20 PPAPKNELNSK--PLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV 77
PP E + PL E+ + S ++ G L L+E + K Q FG I+ +
Sbjct: 361 PPIGDGESGTSGVPLAAPEI--DDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQF 418
Query: 78 F---------KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWG---KESGD-PNN 124
+ +GY F+ F KE A A+ ++ + + + W K S D P
Sbjct: 419 LFHGNGPNRGEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWAHHHKSSADEPQK 478
Query: 125 SQ 126
S+
Sbjct: 479 SK 480
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQ---EIRVFKDKGYAFIRFSTKESATH 96
++ GGL+T +EE M+K F FG + E KD+ A + S + TH
Sbjct: 185 IFIGGLSTNTSEEDMKKYFSQFGKVSCEYETEDVKDE-LAAVLISVHSNGTH 235
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 21 PAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD 80
PA ++ K +T + +++ ++ G + E+ ++ F+P+G I E+ + KD
Sbjct: 145 PAKPPRMDVKTITNGGTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKD 204
Query: 81 K 81
K
Sbjct: 205 K 205
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD 80
++ G ++ EE ++ F PFGTI+E+ V ++
Sbjct: 216 LFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHA 97
S V+ G + E+ + + G I+E R+ D KG+AF F+ + SA A
Sbjct: 151 SGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQA 210
Query: 98 IVAVHNTDI 106
I +++ DI
Sbjct: 211 ITTLNDKDI 219
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 74 EIRVFKD---KGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
+IR+ K+ KG AF+ ++E A A+ VH ++G+P+
Sbjct: 282 DIRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV-FKDKG 82
+ SA++ V+ GGL G TEE +++ F +G ++ + ++++G
Sbjct: 196 RGSANDGKVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERG 239
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDI 106
LT T E +++ F+ +G + +I + +D+ G+AF+RF K A A+ + T +
Sbjct: 23 LTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCL 82
Query: 107 NGQPVKCSW 115
+ W
Sbjct: 83 MAEKFVFRW 91
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRF 88
++CG L + +T+E + + F + + + ++ +D KGY F+ F
Sbjct: 219 IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSF 265
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 62 MQKTFQPFGTIQEIRV--FKD----KGYAFIRFSTKESATHAI 98
++K F FG + + + FK KG+AFI F +K+ A H +
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVV 146
>SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 218 PPQVLHYPVQHFQVQP 233
PP++++YP +HF+V P
Sbjct: 148 PPELMNYPFKHFKVDP 163
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 52 GLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVH 102
GL TE M++ F FG I V D +G+ F+RF E A + + H
Sbjct: 121 GLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSH 177
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 60 ELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQP 110
E ++ F+ +GTI+++ V KDK G +++F SA A + +I P
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGRNIGDDP 93
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRF 88
++ GGL L E+ +++ FG ++ + KD KGYAF +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEY 721
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKG-----YAFIRFSTKESATHAIVAVHNTDINGQPV 111
E++ + + +G I+E+ V + G +++F +E A A+ ++N NGQP+
Sbjct: 85 EDVFLELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKAVNDLNNRWYNGQPI 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,446,601
Number of Sequences: 59808
Number of extensions: 268348
Number of successful extensions: 729
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 89
length of query: 246
length of database: 16,821,457
effective HSP length: 80
effective length of query: 166
effective length of database: 12,036,817
effective search space: 1998111622
effective search space used: 1998111622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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