Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001619-TA|BGIBMGA001619-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
(246 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 136 1e-32
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 133 1e-31
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 118 5e-27
AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 45 4e-05
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 44 8e-05
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 44 8e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 43 2e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 43 2e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 43 2e-04
Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 42 5e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 5e-04
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 42 5e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 41 7e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 41 7e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 41 7e-04
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 41 0.001
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 41 0.001
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 40 0.001
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 40 0.001
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 40 0.001
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 40 0.001
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 40 0.002
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 40 0.002
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 40 0.002
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 39 0.004
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 39 0.004
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 38 0.005
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 38 0.007
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 38 0.007
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 38 0.007
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 37 0.012
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 37 0.012
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 37 0.012
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 37 0.015
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 36 0.020
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.027
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.035
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 36 0.035
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 36 0.035
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 35 0.062
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 35 0.062
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 35 0.062
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 35 0.062
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 35 0.062
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 35 0.062
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 34 0.082
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 34 0.11
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.25
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.25
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 32 0.33
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 32 0.33
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 32 0.33
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 32 0.44
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 0.58
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.76
AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical ... 31 0.76
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 0.76
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 1.0
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 1.0
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 2.3
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 29 4.1
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 4.1
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 4.1
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 4.1
AL117204-24|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 4.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.1
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81142-3|CAB03503.1| 583|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024859-7|AAK29968.1| 550|Caenorhabditis elegans Hypothetical ... 28 7.1
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 27 9.4
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 27 9.4
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 27 9.4
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 27 9.4
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 27 9.4
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 27 9.4
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 136 bits (329), Expect = 1e-32
Identities = 61/121 (50%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNGQWLG R+IRTNWATRKP + + ++DE+YNQ+S N +VY G + + LTE+
Sbjct: 83 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTED 141
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
+++ F FG I E+R+FK +GYAF++F K++A AIV ++N D+ GQ V+CSWGK +G
Sbjct: 142 EIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TG 200
Query: 121 D 121
D
Sbjct: 201 D 201
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ G L++ + + +++ FQPFG + + +V +D KGY F+ + +E A AI +
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 102 HNTDINGQPVKCSWG-KESGD 121
+ + + ++ +W ++ GD
Sbjct: 84 NGQWLGRRTIRTNWATRKPGD 104
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 136 bits (329), Expect = 1e-32
Identities = 61/121 (50%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNGQWLG R+IRTNWATRKP + + ++DE+YNQ+S N +VY G + + LTE+
Sbjct: 93 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTED 151
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
+++ F FG I E+R+FK +GYAF++F K++A AIV ++N D+ GQ V+CSWGK +G
Sbjct: 152 EIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TG 210
Query: 121 D 121
D
Sbjct: 211 D 211
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ G L++ + + +++ FQPFG + + +V +D KGY F+ + +E A AI +
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 102 HNTDINGQPVKCSWG-KESGD 121
+ + + ++ +W ++ GD
Sbjct: 94 NGQWLGRRTIRTNWATRKPGD 114
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 136 bits (329), Expect = 1e-32
Identities = 61/121 (50%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNGQWLG R+IRTNWATRKP + + ++DE+YNQ+S N +VY G + + LTE+
Sbjct: 196 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTED 254
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
+++ F FG I E+R+FK +GYAF++F K++A AIV ++N D+ GQ V+CSWGK +G
Sbjct: 255 EIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TG 313
Query: 121 D 121
D
Sbjct: 314 D 314
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ G L++ + + +++ FQPFG + + +V +D KGY F+ + +E A AI +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 102 HNTDINGQPVKCSWG-KESGD 121
+ + + ++ +W ++ GD
Sbjct: 197 NGQWLGRRTIRTNWATRKPGD 217
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG---YAFIRFSTKESATHAIVAVHN 103
T+Y G L + +TE+ + F G++ + +V D YAF+ FS A+ A+ ++
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNK 106
Query: 104 TDINGQPVKCSWGKESG 120
+ + +K +W E G
Sbjct: 107 RLLLDREMKVNWAVEPG 123
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 136 bits (329), Expect = 1e-32
Identities = 61/121 (50%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNGQWLG R+IRTNWATRKP + + ++DE+YNQ+S N +VY G + + LTE+
Sbjct: 164 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTED 222
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
+++ F FG I E+R+FK +GYAF++F K++A AIV ++N D+ GQ V+CSWGK +G
Sbjct: 223 EIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGK-TG 281
Query: 121 D 121
D
Sbjct: 282 D 282
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ G L++ + + +++ FQPFG + + +V +D KGY F+ + +E A AI +
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 102 HNTDINGQPVKCSWG-KESGD 121
+ + + ++ +W ++ GD
Sbjct: 165 NGQWLGRRTIRTNWATRKPGD 185
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 133 bits (321), Expect = 1e-31
Identities = 72/165 (43%), Positives = 93/165 (56%), Gaps = 20/165 (12%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNE------------------LNSKPLTFDEVYNQSS 42
MNG WLG R+IRTNWATRKP N T+DE++NQ++
Sbjct: 193 MNGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAA 252
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVH 102
A N +VY G + L E+ +++ F FG I E+R FK +GYAF++F TKESA AIV ++
Sbjct: 253 ADNTSVYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMN 311
Query: 103 NTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASG 147
N DI GQ V+CSWGK SGD +G GG +G Y SG
Sbjct: 312 NADIGGQIVRCSWGK-SGDSGKPSERGSGGGGGSGNYGYGYGNSG 355
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 2 NGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEEL 61
NG+ L + + WA P E SKP T + V+ G L + +
Sbjct: 99 NGRELLEKEMHVTWAFE--PREPGENRSKPETSRHFH---------VFVGDLCSEIDSTK 147
Query: 62 MQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
+++ F FG + E ++ +D KGY F+ + +E A AI ++ + + ++ +W
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
Query: 116 GKESGDPNNSQ 126
D + +
Sbjct: 208 ATRKPDEDGER 218
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/85 (20%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD---KGYAFIRFSTKESATHAIVAVHN 103
T++ L +T+E + F G + + ++ + YAF+ FS AT A+ + +
Sbjct: 41 TLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNG 100
Query: 104 TDINGQPVKCSWGKESGDPNNSQAQ 128
++ + + +W E +P ++++
Sbjct: 101 RELLEKEMHVTWAFEPREPGENRSK 125
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 118 bits (283), Expect = 5e-27
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 4/137 (2%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG+W+G R++RTNWA RK +E N LTF++V+N + A N +VY G ++ T+
Sbjct: 88 MNGKWIGKRAVRTNWAARK----NSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDA 143
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
++ F +G I E+R+FK + YAF+R+ KE AT AI+ ++ ++ G V+CSWG+
Sbjct: 144 DLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQA 203
Query: 121 DPNNSQAQGQLGGTAYS 137
N+Q L T ++
Sbjct: 204 VVINNQLSNALKITVFN 220
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ G L+ ++ EL++ TF FG + E +V +D KGY F+ F K++A +AI +
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 102 HNTDINGQPVKCSWGKESGDPNN 124
+ I + V+ +W N
Sbjct: 89 NGKWIGKRAVRTNWAARKNSEEN 111
>AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRV------FKDKGYAFIRFSTKESATHAIVA 100
T+Y GG T +TE+++ F PFG + I + K +G+ F+ F E A AI
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDN 71
Query: 101 VHNTDINGQPVKCSWGKESGDPNNSQ 126
++ +++ G+ ++ ++ + SQ
Sbjct: 72 MNESELFGKTIRVNFARPPKATERSQ 97
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 44.8 bits (101), Expect = 6e-05
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 6 LGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTG----LTEEL 61
L ++IR + P + LN + + + + T+Y G L +TE+
Sbjct: 196 LSRQNIRDRYYGTNDPVAEKILN-RAAAAPTLSPPADTTITTLYIGNLGPSGAQQVTEKD 254
Query: 62 MQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHN-TDINGQPVKCSWGK 117
+ F +G I+ +RV +KG AFI F+T+E+A A N T I G+ + WG+
Sbjct: 255 LNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFNKTFIKGKRLTIRWGE 311
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESA 94
DEV + C ++ G L + E +++ F P G I E KG+AF+R T+ A
Sbjct: 105 DEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-YLSGKGFAFLRLDTRAHA 163
Query: 95 THAIVAVHNTDINGQPVK 112
A A+ I+G+ V+
Sbjct: 164 ESAKEAIDGRIIHGRQVR 181
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESA 94
DEV + C ++ G L + E +++ F P G I E KG+AF+R T+ A
Sbjct: 105 DEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-YLSGKGFAFLRLDTRAHA 163
Query: 95 THAIVAVHNTDINGQPVK 112
A A+ I+G+ V+
Sbjct: 164 ESAKEAIDGRIIHGRQVR 181
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 1 MNGQWLGSRSIRTN-WATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTE 59
MNGQ LG R+++ N ++ P+N ++P+ ++ + + VY + L+E
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPII--DMVQKDAKKYFRVYVSSVHPDLSE 220
Query: 60 ELMQKTFQPFGTIQEIRVFK------DKGYAFIRFSTKESATHAIVAVHNTDINGQ 109
++ F+ FG I + ++ + +G+ ++ F+ S + AI ++ D+ GQ
Sbjct: 221 TDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ 276
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFS 89
++Y+Q+ + +Y G ++ + E+++++ F PFG I+ I + D K +AF+ +
Sbjct: 92 QMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
Query: 90 TKESATHAIVAVHNTDINGQPVK 112
E+A A +++ + G+ +K
Sbjct: 152 VPEAALLAQESMNGQMLGGRNLK 174
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 1 MNGQWLGSRSIRTN-WATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTE 59
MNGQ LG R+++ N ++ P+N ++P+ ++ + + VY + L+E
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPII--DMVQKDAKKYFRVYVSSVHPDLSE 220
Query: 60 ELMQKTFQPFGTIQEIRVFK------DKGYAFIRFSTKESATHAIVAVHNTDINGQ 109
++ F+ FG I + ++ + +G+ ++ F+ S + AI ++ D+ GQ
Sbjct: 221 TDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ 276
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFS 89
++Y+Q+ + +Y G ++ + E+++++ F PFG I+ I + D K +AF+ +
Sbjct: 92 QMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
Query: 90 TKESATHAIVAVHNTDINGQPVK 112
E+A A +++ + G+ +K
Sbjct: 152 VPEAALLAQESMNGQMLGGRNLK 174
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 1 MNGQWLGSRSIRTN-WATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTE 59
MNGQ LG R+++ N ++ P+N ++P+ ++ + + VY + L+E
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPII--DMVQKDAKKYFRVYVSSVHPDLSE 220
Query: 60 ELMQKTFQPFGTIQEIRVFK------DKGYAFIRFSTKESATHAIVAVHNTDINGQ 109
++ F+ FG I + ++ + +G+ ++ F+ S + AI ++ D+ GQ
Sbjct: 221 TDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQ 276
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFS 89
++Y+Q+ + +Y G ++ + E+++++ F PFG I+ I + D K +AF+ +
Sbjct: 92 QMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
Query: 90 TKESATHAIVAVHNTDINGQPVK 112
E+A A +++ + G+ +K
Sbjct: 152 VPEAALLAQESMNGQMLGGRNLK 174
>Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKES 93
Q S V+ + TE+ + F +G I+ I + D KGYA + + T++
Sbjct: 49 QRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKE 108
Query: 94 ATHAIVAVHNTDINGQPVKCSW 115
A AI ++TD+ GQ VK W
Sbjct: 109 ANEAIDQSNDTDLLGQNVKVDW 130
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVA 100
+VY G TEE + F G I +R+ D+ G+AFI F+ + SA A+
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 101 VHNTDINGQPVK 112
++ + NG+P++
Sbjct: 66 MNGAEFNGRPLR 77
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESA------TH 96
++ GG T TE +++ F+ F ++++++ K KGY FI F T++ A T
Sbjct: 68 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 127
Query: 97 AIVAVHNTDINGQPVKCSWGKESGDPNNSQA-QGQLGGTAYSPFGTAYTASGVPPASYWY 155
+ + +N P S P+ + A QL + PF A AS P + Y Y
Sbjct: 128 KQLEFRSRKLNLGPAIRKINSNSFQPSYAIATPSQLVAASPGPFSYAIPASPSPYSGYSY 187
Query: 156 NTYP 159
P
Sbjct: 188 PASP 191
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF----KDKGYAFIRFSTKESATHAIVAVHN 103
VY +E ++K F FG I V K KG+ F+ F+ E A A+ A+H+
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 104 TDINGQPVK 112
+ I G +K
Sbjct: 275 STIEGTDLK 283
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESA 94
SS + ++Y G L + E ++ + F G + IRV +D GYA++ F A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 95 THAIVAVHNTDINGQPVKCSWGK 117
A+ ++ ++G+P++ W +
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQ 109
Score = 36.3 bits (80), Expect = 0.020
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFS 89
D +S A N ++ L + + + TF FG I +V D KGY F+ F
Sbjct: 111 DPAMRRSGAGN--IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
Query: 90 TKESATHAIVAVHNTDINGQPV 111
T+E+A +AI V+ + G+ V
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKV 190
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESA------TH 96
++ GG T TE +++ F+ F ++++++ K KGY FI F T++ A T
Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLTP 128
Query: 97 AIVAVHNTDINGQPVKCSWGKESGDPNNSQA-QGQLGGTAYSPFGTAYTASGVPPASYWY 155
+ + +N P S P+ + A QL + PF A AS P + Y Y
Sbjct: 129 KQLEFRSRKLNLGPAIRKINSNSFQPSYAIATPSQLVAASPGPFSYAIPASPSPYSGYSY 188
Query: 156 NTYP 159
P
Sbjct: 189 PASP 192
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF----KDKGYAFIRFSTKESATHAIVAVHN 103
VY +E ++K F FG I V K KG+ F+ F+ E A A+ A+H+
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 214
Query: 104 TDINGQPVK 112
+ I G +K
Sbjct: 215 STIEGTDLK 223
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESA 94
SS + ++Y G L + E ++ + F G + IRV +D GYA++ F A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 95 THAIVAVHNTDINGQPVKCSWGK 117
A+ ++ ++G+P++ W +
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQ 109
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF----KDKGYAFIRFSTKESATHAIVAVHN 103
VY +E ++K F FG I V K KG+ F+ F+ E A A+ A+H+
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 104 TDINGQPVK 112
+ I G +K
Sbjct: 212 STIEGTDLK 220
Score = 36.3 bits (80), Expect = 0.020
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFS 89
D +S A N ++ L + + + TF FG I +V D KGY F+ F
Sbjct: 48 DPAMRRSGAGN--IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 105
Query: 90 TKESATHAIVAVHNTDINGQPV 111
T+E+A +AI V+ + G+ V
Sbjct: 106 TEEAAQNAIQKVNGMLLAGKKV 127
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF----KDKGYAFIRFSTKESATHAIVAVHN 103
VY +E ++K F FG I V K KG+ F+ F+ E A A+ A+H+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 104 TDINGQPVK 112
+ I G +K
Sbjct: 275 STIEGTDLK 283
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESA 94
SS + ++Y G L + E ++ + F G + IRV +D GYA++ F A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 95 THAIVAVHNTDINGQPVKCSWGK 117
A+ ++ ++G+P++ W +
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQ 109
Score = 36.3 bits (80), Expect = 0.020
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFS 89
D +S A N ++ L + + + TF FG I +V D KGY F+ F
Sbjct: 111 DPAMRRSGAGN--IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
Query: 90 TKESATHAIVAVHNTDINGQPV 111
T+E+A +AI V+ + G+ V
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKV 190
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY GGL + T + +++ F FG I+++ V + G+AF+ + A A+ A+ + I
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 107 NG--QPVKCSWG-KESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNT 157
G V+ S G + G G+ GG S ++ + S +P + ++++
Sbjct: 65 CGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDSGLRSSASPSAIPNITIFHSS 118
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
V+CG L +++EL+ K F+ + + Q+ +V K KGY F+ F E A+ +
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 102 HNTDINGQPVK 112
+ +P+K
Sbjct: 265 DGKYVGNRPIK 275
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
V+ GGL+ T E M++ F+ +G +++ + DK G+ F+ F + E A + +
Sbjct: 136 VFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVA-DKVCEI 194
Query: 102 HNTDINGQPVKC 113
H +ING+ V+C
Sbjct: 195 HFHEINGKMVEC 206
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL+ T E ++ F FG + E V +D +G+ FI F S+ ++
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITF-VDPSSVDKVLNN 105
Query: 102 HNTDINGQPV 111
+++G+ +
Sbjct: 106 REHELDGKKI 115
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY GGL + T + +++ F FG I+++ V + G+AF+ + A A+ A+ + I
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 107 NG--QPVKCSWGKESGDPNNSQAQGQLGG 133
G V+ S G+ G G GG
Sbjct: 65 CGVRARVELSTGQRRGGGGRGGGFGGRGG 93
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY GGL + T + +++ F FG I+++ V + G+AF+ + A A+ A+ + I
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 107 NG--QPVKCSWGKESGDPNNSQAQGQLGG 133
G V+ S G+ G G GG
Sbjct: 65 CGVRARVELSTGQRRGGGGRGGGFGGRGG 93
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
V+ GGL+ T E M++ F+ +G +++ + DK G+ F+ F + E A + +
Sbjct: 136 VFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVA-DKVCEI 194
Query: 102 HNTDINGQPVKC 113
H +ING+ V+C
Sbjct: 195 HFHEINGKMVEC 206
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL+ T E ++ F FG + E V +D +G+ FI F S+ ++
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITF-VDPSSVDKVLNN 105
Query: 102 HNTDINGQPV 111
+++G+ +
Sbjct: 106 REHELDGKKI 115
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGLT+ T++LM++ + FG I +I V +D +G+ F+ FS K + A +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK-TEVDAAMKQ 83
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQA 127
I+G+ V D N S++
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRF 88
D+ ++S+ S +Y G+ TE+++ + F +GT+ + + DK G+ F+ F
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162
Query: 89 STKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQ 128
+S ++ + +NG +C K S+AQ
Sbjct: 163 DDHDSVDQCVLQKSHM-VNGH--RCDVRKGLSKDEMSKAQ 199
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGLT+ T++LM++ + FG I +I V +D +G+ F+ FS K + A +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK-TEVDAAMKQ 83
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQA 127
I+G+ V D N S++
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRF 88
D+ ++S+ S +Y G+ TE+++ + F +GT+ + + DK G+ F+ F
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162
Query: 89 STKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQ 128
+S ++ + +NG +C K S+AQ
Sbjct: 163 DDHDSVDQCVLQKSHM-VNGH--RCDVRKGLSKDEMSKAQ 199
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGLT+ T++LM++ + FG I +I V +D +G+ F+ FS K + A +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK-TEVDAAMKQ 83
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQA 127
I+G+ V D N S++
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRF 88
D+ ++S+ S +Y G+ TE+++ + F +GT+ + + DK G+ F+ F
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162
Query: 89 STKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQ 128
+S ++ + +NG +C K S+AQ
Sbjct: 163 DDHDSVDQCVLQKSHM-VNGH--RCDVRKGLSKDEMSKAQ 199
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDI 106
L G+T+E ++ F G I+ ++ +DK GY F+ + +E A A+ + + +
Sbjct: 49 LPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRL 108
Query: 107 NGQPVKCSWGKESGD 121
+ +K S+ + S D
Sbjct: 109 QNKTIKVSYARPSND 123
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESAT 95
S + ++ L++ + L+ + F FG I +++ +D KGYAF+ S A
Sbjct: 369 SDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAY 428
Query: 96 HAIVAVHNTDINGQPVK 112
+A+++++ T++ G+ ++
Sbjct: 429 NAMLSLNGTNLAGKTLQ 445
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKE 92
+Q SN +Y G+ +T ++ F+PFG I R+ D KG F+RF K+
Sbjct: 123 DQIKGSN--LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKD 180
Query: 93 SATHAIVAVHNTDING 108
A AI ++ + +G
Sbjct: 181 EADVAIKTLNGSIPSG 196
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
S ++Y G L ++E ++ + F G + IRV +D GYA++ F A A
Sbjct: 55 SMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERA 114
Query: 98 IVAVHNTDINGQPVKCSWGK 117
+ ++ I+G+P++ W +
Sbjct: 115 LDTMNFEVIHGRPMRIMWSQ 134
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHA 97
A N ++ L + + + TF FG I +V D KGY F+ F T+ SA A
Sbjct: 142 AGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTA 201
Query: 98 IVAVHNTDINGQPV 111
I V+ ++ + V
Sbjct: 202 IEKVNGMLLSDKKV 215
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
S ++Y G L ++E ++ + F G + IRV +D GYA++ F A A
Sbjct: 55 SMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERA 114
Query: 98 IVAVHNTDINGQPVKCSWGK 117
+ ++ I+G+P++ W +
Sbjct: 115 LDTMNFEVIHGRPMRIMWSQ 134
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHA 97
A N ++ L + + + TF FG I +V D KGY F+ F T+ SA A
Sbjct: 142 AGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTA 201
Query: 98 IVAVHNTDINGQPV 111
I V+ ++ + V
Sbjct: 202 IEKVNGMLLSDKKV 215
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
+ T+Y GGL ++E ++ + G + + + KD+ G+ F+ F +E A +AI
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 99 VAVHNTDINGQPVK 112
++ + G+P+K
Sbjct: 72 KILNMIKLYGKPIK 85
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 26 ELNSKPLTFDEV--YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEI-RVFKD-- 80
+L KP+ ++ + ++ ++ G L + E+L+ TF FG I ++ ++ +D
Sbjct: 78 KLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVD 137
Query: 81 ----KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
KG+AFI F++ E++ A+ A++ + + + S+
Sbjct: 138 SGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
+ T+Y GGL ++E ++ + G + + + KD+ G+ F+ F +E A +AI
Sbjct: 22 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 81
Query: 99 VAVHNTDINGQPVK 112
++ + G+P+K
Sbjct: 82 KILNMIKLYGKPIK 95
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 26 ELNSKPLTFDEV--YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEI-RVFKD-- 80
+L KP+ ++ + ++ ++ G L + E+L+ TF FG I ++ ++ +D
Sbjct: 88 KLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVD 147
Query: 81 ----KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
KG+AFI F++ E++ A+ A++ + + + S+
Sbjct: 148 SGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 186
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
++CT+Y G L+ E+ + + F G ++ + + D+ G+ F+ + T+E A A
Sbjct: 35 TSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELA 94
Query: 98 IVAVHNTDINGQPVKCSWGKESGDPNNSQ-AQGQLGGTAYSPFGTAY 143
+ + NT ++ + ++ W ++G Q +G+ GG + Y
Sbjct: 95 LQNISNTRMDDRVIRADW--DAGFIEGRQYGRGKHGGQVRDEYRKDY 139
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 65 TFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
TF PFG I +VF DK + F+ + +SAT+AI A++ I + +K +
Sbjct: 354 TFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVD 413
Query: 119 SGDPNN 124
G+P N
Sbjct: 414 RGNPYN 419
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 65 TFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
TF PFG I +VF DK + F+ + +SAT+AI A++ I + +K +
Sbjct: 518 TFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVD 577
Query: 119 SGDPNN 124
G+P N
Sbjct: 578 RGNPYN 583
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 65 TFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
TF PFG I +VF DK + F+ + +SAT+AI A++ I + +K +
Sbjct: 518 TFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVD 577
Query: 119 SGDPNN 124
G+P N
Sbjct: 578 RGNPYN 583
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHA 97
Y +S S ++ GGL + +E++QK F FG ++ I + YA++ + ++ A
Sbjct: 244 YGKSQVSR-RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQPYAYVVYENTHTSQEA 302
Query: 98 IVAVHNTDIN--GQPVKCSWGKE-SGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
++ I+ P+ + K+ + P Q + + SP G +A PP S
Sbjct: 303 CRSLRGACISKGNHPIMVDYAKDLTAQPEKQQFMRKRRASK-SPVGA--SAVRTPPGS 357
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK----DKGYAFIRFSTKESATHAIVAVH 102
T++ G + + + E ++ F+ G ++E+ + D YAF+ F T + A A
Sbjct: 170 TLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQAKAEEQ 229
Query: 103 NTDI--NGQPVKCSWGK 117
+ I G +K +GK
Sbjct: 230 DRPIRAGGSRMKIGYGK 246
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHA 97
Y +S S ++ GGL + +E++QK F FG ++ I + YA++ + ++ A
Sbjct: 244 YGKSQVSR-RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQPYAYVVYENTHTSQEA 302
Query: 98 IVAVHNTDIN--GQPVKCSWGKE-SGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
++ I+ P+ + K+ + P Q + + SP G +A PP S
Sbjct: 303 CRSLRGACISKGNHPIMVDYAKDLTAQPEKQQFMRKRRASK-SPVGA--SAVRTPPGS 357
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK----DKGYAFIRFSTKESATHAIVAVH 102
T++ G + + + E ++ F+ G ++E+ + D YAF+ F T + A A
Sbjct: 170 TLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQAKAEEQ 229
Query: 103 NTDI--NGQPVKCSWGK 117
+ I G +K +GK
Sbjct: 230 DRPIRAGGSRMKIGYGK 246
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHA 97
Y +S S ++ GGL + +E++QK F FG ++ I + YA++ + ++ A
Sbjct: 221 YGKSQVSR-RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQPYAYVVYENTHTSQEA 279
Query: 98 IVAVHNTDIN--GQPVKCSWGKE-SGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
++ I+ P+ + K+ + P Q + + SP G +A PP S
Sbjct: 280 CRSLRGACISKGNHPIMVDYAKDLTAQPEKQQFMRKRRASK-SPVGA--SAVRTPPGS 334
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK----DKGYAFIRFSTKESATHAIVAVH 102
T++ G + + + E ++ F+ G ++E+ + D YAF+ F T + A A
Sbjct: 147 TLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQAKAEEQ 206
Query: 103 NTDI--NGQPVKCSWGK 117
+ I G +K +GK
Sbjct: 207 DRPIRAGGSRMKIGYGK 223
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y G + T + E+ + F+ G I ++R+ D +GYAF+ + KE A A
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTY 261
Query: 102 HNTDIN-GQPVK 112
+I+ G+P+K
Sbjct: 262 DGHEISTGKPLK 273
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
+Y + +TEE + + F+ + ++ ++ KD YAFI F+ ++ A+ + ++
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDRVKKVKD--YAFIHFNERDDCLKAMEEWNGKELE 436
Query: 108 GQPVKCSWGK 117
G V+ S K
Sbjct: 437 GTVVEASLAK 446
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
S +VY G TE+ + F G + +R+ D+ G+AF+ F+ + +A A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 98 IVAVHNTDINGQPVK 112
+ + D NG+ ++
Sbjct: 62 VDQFNGVDFNGRALR 76
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-GYAFIRFSTKESATHAIVAVHN 103
N ++C L T E+++ F F +++IR+ ++ G AF+ F T A A ++N
Sbjct: 131 NKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNN 190
Query: 104 TDINGQ 109
I+ +
Sbjct: 191 FKISAE 196
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVA 100
+VY G + TEE + F G + +R+ D+ G+AF+ FS + A A+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 101 VHNTDINGQPVKCSWGKE 118
++ NG+ ++ ++ +
Sbjct: 67 LNGVAFNGRNLRVNYANK 84
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 62 MQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
+++TF+ +G I ++ + +DK G+ F+RF + A HA+ ++G+ ++ +
Sbjct: 35 LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTL 94
Query: 116 GKESGDPNNSQAQGQLGG 133
K + +G GG
Sbjct: 95 AKYDRPSDERGGRGGGGG 112
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 62 MQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
+++TF+ +G I ++ + +DK G+ F+RF + A HA+ ++G+ ++ +
Sbjct: 35 LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTL 94
Query: 116 GKESGDPNNSQAQGQLGG 133
K + +G GG
Sbjct: 95 AKYDRPSDERGGRGGGGG 112
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 53 LTTGLTEELMQKTFQPFGTIQE--IRVFKD---KGYAFIRFSTKESATHAIVAVHNTDIN 107
L + TE+ ++K F+ +G I + ++ K+ +G+AF+ F + SA++A+ + T N
Sbjct: 10 LPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFN 69
Query: 108 GQPVKCSWGKESGDPNNSQA 127
+ + + GD N +A
Sbjct: 70 SKKLTVEECRPFGDANKPRA 89
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 34.7 bits (76), Expect = 0.062
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDI 106
L++ TE+ ++ F FG I + + D+ G+ FI F+ E AT A + NTD+
Sbjct: 83 LSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTDL 142
Query: 107 NGQPVKCSWG--KESGDPNNSQAQGQLGGTAYSPFG 140
+G ++ + K P Q G G S G
Sbjct: 143 DGHKIRVDFSLTKRGHSPTPGQYMGDRRGGGSSGGG 178
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRF 88
D+ ++S+ S +Y G+ TE+++ + F +GT+ + + DK G+ F+ F
Sbjct: 65 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 124
Query: 89 STKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQ 128
+S ++ + +NG +C K S+AQ
Sbjct: 125 DDHDSVDQCVLQKSHM-VNGH--RCDVRKGLSKDEMSKAQ 161
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRF 88
D+ ++S+ S +Y G+ TE+++ + F +GT+ + + DK G+ F+ F
Sbjct: 65 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 124
Query: 89 STKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQ 128
+S ++ + +NG +C K S+AQ
Sbjct: 125 DDHDSVDQCVLQKSHM-VNGH--RCDVRKGLSKDEMSKAQ 161
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFS 89
EV S N V+ GGL + +E+ ++ F+ FG + +I DK +AFI F
Sbjct: 100 EVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
Query: 90 TKESATHA 97
+ESA A
Sbjct: 160 EEESADKA 167
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GG++ + E + F +G + + +V D+ G+AF+ F+T E A+ A
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 102 HNTDINGQPVK 112
T I G+ V+
Sbjct: 91 EQT-IKGKSVE 100
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFS 89
EV S N V+ GGL + +E+ ++ F+ FG + +I DK +AFI F
Sbjct: 100 EVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
Query: 90 TKESATHA 97
+ESA A
Sbjct: 160 EEESADKA 167
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GG++ + E + F +G + + +V D+ G+AF+ F+T E A+ A
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 102 HNTDINGQPVK 112
T I G+ V+
Sbjct: 91 EQT-IKGKSVE 100
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 34.7 bits (76), Expect = 0.062
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 66 FQPFGTIQE--IRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGK 117
+Q FG I + ++ GY F+ F T+ +A IV + +NG+ + SW +
Sbjct: 113 YQAFGGITDGVVQCHVADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWAR 166
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.082
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIR 87
DEV + C ++ G L + E +++ F P G I E KG+AF+R
Sbjct: 105 DEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-YLSGKGFAFLR 156
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKE 92
N+S + C V L + E+ ++ F G + I + +DK G+AF+ F +++
Sbjct: 171 NRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRD 228
Query: 93 SATHAIVAVHNTDINGQPVKCSWGKES 119
A AI +++ + +K W + S
Sbjct: 229 DAARAIAELNDIRMYHMVLKVEWTRPS 255
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTK 91
++Q+ + +Y GGL+ L+E + F +G + I + +D KG+AF+ + +
Sbjct: 30 WHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQ 89
Query: 92 ESATHAI 98
S A+
Sbjct: 90 RSTILAV 96
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAV 101
T++ G + +E +++ F+ +G I+++ + D +GYAFI +S K A
Sbjct: 105 TLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKA 164
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
++G+ + + E G + +LGG
Sbjct: 165 DGIKVDGKRLVVDY--ERGRTQKTWLPRRLGG 194
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ G + L E+ ++ F+ FG I E + KD KG AF+ + ++SA +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 102 HN 103
H+
Sbjct: 91 HD 92
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ G + L E+ ++ F+ FG I E + KD KG AF+ + ++SA +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 102 HN 103
H+
Sbjct: 91 HD 92
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 25 NELNSKPLTFDEVYNQSSAS----NCTVYCGGLTTGL-TEELMQKTFQPFGTIQEIRVFK 79
N + S + D Y+ SS V+ G + + T + + + F+PFG I + F
Sbjct: 58 NLVGSAAVNSDISYDTSSKDPHMIRARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFA 117
Query: 80 DKGYAFIRFSTKESA 94
+G+ F++F+ SA
Sbjct: 118 QQGFGFVQFNEAGSA 132
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 37 VYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIR----FSTKE 92
+Y++ +A TVY L G +EE + + +GT+ E+R+ K KG +IR F +
Sbjct: 813 IYDREAA---TVYVDNLPEGCSEEKLLRLCSCYGTVVEVRISK-KGGRWIRPKQNFKKRT 868
Query: 93 SATHAIVAVHNTDINGQPV 111
S H T +P+
Sbjct: 869 SGVSTNRQAHRTPPKKKPL 887
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/74 (17%), Positives = 32/74 (43%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI 106
T++ + T + E +++ + G ++V ++ A+I + SA + + +
Sbjct: 526 TLWLKKIPTNIVENDLKQAVESCGEASRVKVIGNRACAYITMENRRSANDVVSKMREVSV 585
Query: 107 NGQPVKCSWGKESG 120
+ VK W + G
Sbjct: 586 AKKMVKVYWARSPG 599
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-KGYAFIRFSTKESATHAIVAVHN 103
N ++C + G E +Q F F ++E+R + K +AFI + +++ + A A+ N
Sbjct: 142 NNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDN 201
>AF077546-4|AAC26317.2| 704|Caenorhabditis elegans Hypothetical
protein T08E11.4 protein.
Length = 704
Score = 31.1 bits (67), Expect = 0.76
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 10/156 (6%)
Query: 9 RSIRTNW--ATRKPPAPKNELNS-KPLTFDEVYNQSSASNCTV-YCGGLTTGLTEELMQK 64
+S+ NW KP E S K L D V + S V L + TE + QK
Sbjct: 486 KSLMKNWKYTFAKPTGRGFEFISWKELESDYVVDDSIVVEAHVKILNILDSPCTETMNQK 545
Query: 65 TFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNN 124
TF T+Q + K++G T + I G ++C K+ D +
Sbjct: 546 TFMLNHTVQNVSNIKERGIYTTNVETHYNIPWRIEIQRREGFFGMYLQCE--KKHFDSKD 603
Query: 125 SQAQGQLGGTAYSPFG--TAYTASGV--PPASYWYN 156
+ +L T S G ++TAS PASY Y+
Sbjct: 604 WSIEVELVLTLKSSNGQRLSFTASSTLNEPASYGYD 639
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 31.1 bits (67), Expect = 0.76
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
++ GGL +++ + + F+ FG I+E V K +GY F+ + SA A
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERA-CKD 95
Query: 102 HNTDINGQPVKCSWGKESGDP-NNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTYP 159
N I+G+ + P N Q G P T A P YP
Sbjct: 96 PNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQLPLTTQLQALFQPRMGLPQMYYP 154
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/97 (17%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 21 PAPKNELNSKPLTFD-EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK 79
P+ K+ + + P++ + +S ++ +Y + E+ + F +G + + +
Sbjct: 25 PSNKDPIFTMPISVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVT 84
Query: 80 D----KGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+ KG+ F+ + ES A A+H + + G+ ++
Sbjct: 85 NDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIE 121
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/97 (17%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 21 PAPKNELNSKPLTFD-EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK 79
P+ K+ + + P++ + +S ++ +Y + E+ + F +G + + +
Sbjct: 25 PSNKDPIFTMPISVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVT 84
Query: 80 D----KGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+ KG+ F+ + ES A A+H + + G+ ++
Sbjct: 85 NDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIE 121
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 18 RKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV 77
+KP PK +L + ++S V+ L+ EEL+++ FG I +
Sbjct: 244 KKPKNPKAQLKT---------DESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAII 294
Query: 78 --FKD----KGYAFIRFSTKESATHAIVAVHN 103
+KD KG AF+ FST A++ I V +
Sbjct: 295 CKYKDSGHSKGTAFVHFSTPIEASNCIEGVED 326
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 58 TEELMQKTFQPFGTIQEIR--VFKD---KGYAFIRFSTKESATHAIVA 100
T++ ++ F FGT+ +R KD KG AF+ F T+ SA + +
Sbjct: 695 TDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVAS 742
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 SSASNC-TVYCGGLTTGLTEELMQKTFQPFGTIQEIRV 77
S+A N TV+ G + + E+ +++ F FGTI +R+
Sbjct: 137 SAAENALTVFVGNMPLTMNEKSVRRIFSDFGTISSVRM 174
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 48 VYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
++ G L +TE+ + F G ++ +R+ +DK G+AF+ F S + A+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL 305
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-----DKGYAFIRFS 89
++ YN +S N ++ + + + + + F + + + ++F+ KG F+RF
Sbjct: 147 NDSYNPNSEFN--LHVSSVPDDMADAELYRIFDKYQSCRGAKMFRFVDGSSKGSGFVRFG 204
Query: 90 TKESATHAIVAVHNTDING 108
+ A+V +H T + G
Sbjct: 205 NQTDQQMALVEMHRTKVGG 223
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
TVY + + ++ F+ +G+IQ + +F D +G+A I F +K+ A AI
Sbjct: 26 TVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAI 83
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 5 WLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYC---GGLTTGLTEEL 61
W S S W TR+ NE+ +KPLT +E A +Y G L + E L
Sbjct: 411 WKISESDLRIWLTRREIRAVNEIVTKPLTKNEAVRSRDALTKMLYSHLFGWLVDKINEAL 470
Query: 62 MQK 64
+K
Sbjct: 471 NEK 473
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 5 WLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYC---GGLTTGLTEEL 61
W S S W TR+ NE+ +KPLT +E A +Y G L + E L
Sbjct: 411 WKISESDLRIWLTRREIRAVNEIVTKPLTKNEAVRSRDALTKMLYSHLFGWLVDKINEAL 470
Query: 62 MQK 64
+K
Sbjct: 471 NEK 473
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 5 WLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYC---GGLTTGLTEEL 61
W S S W TR+ NE+ +KPLT +E A +Y G L + E L
Sbjct: 411 WKISESDLRIWLTRREIRAVNEIVTKPLTKNEAVRSRDALTKMLYSHLFGWLVDKINEAL 470
Query: 62 MQK 64
+K
Sbjct: 471 NEK 473
>AL117204-24|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 59 EELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
EE+ + + +G ++EI V ++ G +++F +E A A ++N NGQP+
Sbjct: 92 EEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPI 149
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 93 SATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
+AT A+VA + Q + +G +SG NN +QG GG
Sbjct: 10 AATAAVVAQQSNFGGQQQEQSGFGSQSGFGNNQGSQGGFGG 50
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 93 SATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
+AT A+VA + Q + +G +SG NN +QG GG
Sbjct: 16 AATAAVVAQQSNFGGQQQEQSGFGSQSGFGNNQGSQGGFGG 56
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 24 KNELNSKPLTFDEVYNQSSASNCTVYCGGL 53
+ + N+ L D V +SS S+ ++YC GL
Sbjct: 1204 EGDANTPQLQLDAVLGESSGSSLSIYCRGL 1233
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 91 KESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPP 150
K + H + H + +G V G+ P Q+ T+ + + AYT G P
Sbjct: 2890 KRGSDHTHTSGHASLNSGSTVSAYSGRAIHRPPAYQSDTLSTATSENTYSYAYTPHGGPT 2949
Query: 151 ASYWYNTYP 159
AS YNT P
Sbjct: 2950 AS--YNTRP 2956
>Z81142-3|CAB03503.1| 583|Caenorhabditis elegans Hypothetical
protein ZK1037.4 protein.
Length = 583
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 31 PLTFDEVYNQSSASNCTVYCGGLTTG 56
PL F ++ N + S+C CGG G
Sbjct: 317 PLVFPQMSNSETTSDCCSVCGGAPNG 342
>AC024859-7|AAK29968.1| 550|Caenorhabditis elegans Hypothetical
protein Y71H2AM.13 protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 88 FSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPF 139
++T +S+ VA+H+ + VK + G +GDPNN GQ G A F
Sbjct: 163 WTTGDSSIPDNVALHDMVFALKWVKENIGLFNGDPNNITLMGQSAGGASVDF 214
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 52 GLTTGLTEELMQKTFQPFGTIQ--EIRVFKD---KGYAFIRFSTKESATHAIVAVHNTDI 106
G+ T+E QK F+ GT+ EI+ D KG+ F+R S+ + ++A+ I
Sbjct: 179 GVDFKTTDECFQKYFEDIGTVVFCEIKRKSDGNSKGFGFVRMSS-VGEQNKVLAIPQHMI 237
Query: 107 NGQ--PVKCSWGKE-SGDPNNSQ 126
+G+ VK G++ G P+ S+
Sbjct: 238 DGRRCDVKVPDGRDKQGRPSISR 260
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRV-FKDKGY 83
T+Y G L + +TE+ + F G++ + +V F + GY
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELGY 84
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAF 85
TV+ GGL +T E + + F FG + + + D+ Y +
Sbjct: 320 TVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAF 85
TV+ GGL +T E + + F FG + + + D+ Y +
Sbjct: 320 TVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAF 85
TV+ GGL +T E + + F FG + + + D+ Y +
Sbjct: 106 TVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 144
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAF 85
TV+ GGL +T E + + F FG + + + D+ Y +
Sbjct: 320 TVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.131 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,469,000
Number of Sequences: 27539
Number of extensions: 201487
Number of successful extensions: 668
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 139
length of query: 246
length of database: 12,573,161
effective HSP length: 80
effective length of query: 166
effective length of database: 10,370,041
effective search space: 1721426806
effective search space used: 1721426806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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