GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001619-TA|BGIBMGA001619-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
         (246 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 99  VAVHNTDINGQPVKCSWGKESGD 121
           +A     I+G+PVK + G  SG+
Sbjct: 496 LAADEVQIDGEPVKITIGIHSGE 518


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 47  TVYCGGLTTGLTEELMQKTFQPFGTIQEIR 76
           TV  G + TG+ +  M  TF P G   E++
Sbjct: 204 TVPVGRVETGVLKPGMVVTFAPAGLTTEVK 233


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 47  TVYCGGLTTGLTEELMQKTFQPFGTIQEIR 76
           TV  G + TG+ +  M  TF P G   E++
Sbjct: 261 TVPVGRVETGVLKPGMVVTFAPAGLTTEVK 290


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 99  VAVHNTDINGQPVKCSWGKESGD 121
           +A     I+G+PVK + G  SG+
Sbjct: 496 LAADEVQIDGEPVKITIGIHSGE 518


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,421
Number of Sequences: 429
Number of extensions: 2319
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 246
length of database: 140,377
effective HSP length: 56
effective length of query: 190
effective length of database: 116,353
effective search space: 22107070
effective search space used: 22107070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)