Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001619-TA|BGIBMGA001619-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1
(246 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 77 1e-14
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 76 2e-14
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 72 3e-13
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 70 2e-12
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 70 2e-12
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 66 2e-11
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 66 2e-11
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 66 3e-11
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 65 4e-11
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 64 8e-11
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 62 4e-10
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 61 6e-10
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 56 2e-08
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 55 4e-08
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 54 7e-08
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 54 9e-08
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 48 4e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 48 8e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 47 1e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 47 1e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 47 1e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 47 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 46 2e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 46 2e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 2e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 46 3e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 45 4e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 7e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 44 1e-04
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 43 2e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 43 2e-04
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 43 2e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 43 2e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 42 5e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 41 7e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 41 7e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 41 9e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 41 9e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 41 9e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 9e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 40 0.001
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 40 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.001
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 40 0.002
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 40 0.002
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 40 0.002
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 40 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 40 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 39 0.003
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.003
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.003
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 39 0.003
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.003
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.003
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 39 0.004
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.004
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.004
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.004
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.004
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 39 0.004
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 39 0.004
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.005
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.005
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 38 0.005
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 38 0.005
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.006
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 38 0.006
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 38 0.006
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 38 0.006
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.006
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 38 0.008
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 38 0.008
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.008
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 38 0.008
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 38 0.008
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 38 0.008
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 37 0.011
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 37 0.011
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 37 0.011
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.011
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 37 0.011
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 37 0.011
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 37 0.011
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 37 0.011
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.011
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 37 0.011
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 37 0.015
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 37 0.015
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 37 0.015
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 37 0.015
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 37 0.015
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.019
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 36 0.019
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.025
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.025
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 35 0.044
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 35 0.044
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 35 0.044
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.044
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 35 0.044
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.059
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.059
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.059
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 35 0.059
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 35 0.059
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 34 0.077
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 34 0.077
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 34 0.10
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.10
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.14
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.14
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.14
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 33 0.14
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.14
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 33 0.14
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 33 0.14
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.18
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 33 0.18
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.24
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.24
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.24
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 32 0.31
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 32 0.31
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.31
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.41
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.41
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 32 0.41
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ... 31 0.55
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.72
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.72
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 31 0.72
At4g10610.1 68417.m01735 RNA-binding protein, putative 31 0.95
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 0.95
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.95
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.95
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 31 0.95
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.3
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 30 1.3
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.3
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 30 1.7
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 1.7
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 30 1.7
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 2.2
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 2.2
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 2.2
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 2.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 2.9
At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase, ... 29 2.9
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 2.9
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 2.9
At5g24440.1 68418.m02880 RNA-binding protein, putative 29 3.8
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 3.8
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 5.1
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 5.1
At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.1
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 28 5.1
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 28 5.1
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 28 6.7
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 28 6.7
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 28 6.7
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 6.7
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 28 6.7
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 28 6.7
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 8.9
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 8.9
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 8.9
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 27 8.9
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 27 8.9
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 27 8.9
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSA----SNCTVYCGGLTTG 56
MNGQ+ +R +R P A KN L +P + ++ +N T++ GGL
Sbjct: 216 MNGQYCSTRPMRIG-----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDAN 270
Query: 57 LTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWG 116
+T++ ++ F FG + +++ K F++++ K SA HA+ ++ T + GQ ++ SWG
Sbjct: 271 VTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG 330
Query: 117 KESGDPNNSQAQGQLGGTAY 136
+ PN Q Q G Y
Sbjct: 331 R---SPNKQSDQAQWNGGGY 347
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKE 92
Q+ + T++ G L +T+ ++ TF+ +G+++ +V D KGY F+RF+ +
Sbjct: 148 QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 93 SATHAIVAVHNTDINGQ 109
A+ T++NGQ
Sbjct: 208 EQMRAM-----TEMNGQ 219
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 76.2 bits (179), Expect = 2e-14
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSAS---NCTVYCGGLTTGL 57
MNGQ+ SR +RT P A K L +P ++ S S N T++ G + +
Sbjct: 235 MNGQYCSSRPMRTG-----PAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSV 289
Query: 58 TEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGK 117
TE+ ++ F FG + +++ K F++++ + A A+ ++ T + GQ ++ SWG+
Sbjct: 290 TEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
Query: 118 ESGDPNNSQAQGQLGG----TAYSPFGTAYTASGVPPASYWYNTY 158
+ Q Q GG Y P G Y A G P N Y
Sbjct: 350 SPSNKQTQPDQAQYGGGGGYYGYPPQG--YEAYGYAPPPQDPNAY 392
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKE 92
Q+ TV+ G L +T+ ++ +TF+ + +++ +V D KGY F+RF+ +
Sbjct: 167 QAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226
Query: 93 SATHAIVAVHNTDINGQPVK 112
A+ ++ + +P++
Sbjct: 227 EQIRAMTEMNGQYCSSRPMR 246
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 72.1 bits (169), Expect = 3e-13
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 20/144 (13%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSK-----PLTF------DEVYNQSSASN---- 45
MNG+WL SR IR NWAT+ + ++L+S LT E N+ + N
Sbjct: 205 MNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQF 264
Query: 46 CTVYCGGLTTGLTEELMQKTFQPF--GTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHN 103
TVY G L +T+ + + F G I+E+RV +DKG+ F+R++T A AI + N
Sbjct: 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAI-QMGN 323
Query: 104 TD--INGQPVKCSWGKESGDPNNS 125
T + + +KCSWG + P +
Sbjct: 324 TQPYLFNRQIKCSWGNKPTPPGTA 347
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 44 SNC-TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKG-YAFIRFSTKESATHAIVA 100
S C +VY G + T +TE L+Q+ F G ++ ++ KDK Y F+ + + SA AI++
Sbjct: 56 STCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILS 115
Query: 101 VHNTDINGQPVKCSWGKESGDPNNSQA 127
++ + GQP+K +W +G ++ +
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSS 142
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKES 93
+ ++S+ ++ G L+ +T+ + ++F F + + RV D +G+ F+ F ++
Sbjct: 138 EDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQD 197
Query: 94 ATHAIVAVHNTDINGQPVKCSW---GKESGD 121
A AI ++ ++ + ++C+W G SGD
Sbjct: 198 AQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 69.7 bits (163), Expect = 2e-12
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELN-SKPLTF------DEVYNQSSASNCTVYCGGL 53
MNG + SR +R AT K A + N S+ LT + + ++N T++ GGL
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 54 TTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKC 113
+TEE + + F FG + +++ KG F++F+ ++SA AI ++ T I V+
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRL 394
Query: 114 SWGKESGDPNNSQAQGQLGG 133
SWG+ S + Q G
Sbjct: 395 SWGRSPNKQWRSDSGNQWNG 414
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 69.7 bits (163), Expect = 2e-12
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 18/136 (13%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYN---------------QSSASN 45
+ G+WLGSR IR NWAT+ + +++ +S + E+ + +++A
Sbjct: 200 ITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQY 259
Query: 46 CTVYCGGLTTGLTEELMQKTFQPF--GTIQEIRVFKDKGYAFIRFSTKESATHAI-VAVH 102
TVY G L +++ + + F G I+E+RV +DKG+ F+R+ST A AI +
Sbjct: 260 TTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNT 319
Query: 103 NTDINGQPVKCSWGKE 118
++ ++G+ +KCSWG +
Sbjct: 320 HSYLSGRQMKCSWGSK 335
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 44 SNC-TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKG-YAFIRFSTKESATHAIVA 100
S C +VY G + +TE L+Q+ F G ++ ++ K+K Y F+ + + SA AI++
Sbjct: 51 STCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILS 110
Query: 101 VHNTDINGQPVKCSWGKESGDPNNSQA 127
++ + GQP+K +W SG ++ +
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSS 137
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKES 93
+ ++S+ ++ G L+ +T+ ++ F + T + RV D +G+ F+ F ++
Sbjct: 133 EDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQD 192
Query: 94 ATHAIVAVHNTDINGQPVKCSW---GKESGDPNNS 125
A AI + + + ++C+W G SG+ S
Sbjct: 193 AQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQS 227
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 66.5 bits (155), Expect = 2e-11
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSA-----SN---------- 45
MNG+W+ SR IR NWAT+ +++ +S + E+ N SS SN
Sbjct: 213 MNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQF 272
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGT--IQEIRVFKDKGYAFIRFSTKESATHAI-VAVH 102
TVY G L+ +T+ + + F G I+E+RV +DKG+ F+R++T + A AI +
Sbjct: 273 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNA 332
Query: 103 NTDINGQPVKCSWGKE 118
+ + ++CSWG +
Sbjct: 333 QPFLFSRQIRCSWGNK 348
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKG-YAFIRFSTKESATHAIVAVHNT 104
+VY G + T +TE L+Q+ F G I+ ++ KDK Y F+ + + A+ AI+ ++
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGR 123
Query: 105 DINGQPVKCSWGKESGDPNNSQA 127
I GQP+K +W +G ++ +
Sbjct: 124 HIFGQPMKVNWAYATGQREDTSS 146
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/86 (19%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTI----QEIRVFKD------KGYAFIRFS 89
+ ++S+ ++ G L+ +T+ + +F F + ++ RV D +G+ F+ F
Sbjct: 142 EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
Query: 90 TKESATHAIVAVHNTDINGQPVKCSW 115
++ A AI ++ ++ + ++C+W
Sbjct: 202 NQQDAQTAINEMNGKWVSSRQIRCNW 227
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 66.5 bits (155), Expect = 2e-11
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSA-----SN---------- 45
MNG+W+ SR IR NWAT+ +++ +S + E+ N SS SN
Sbjct: 209 MNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQF 268
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGT--IQEIRVFKDKGYAFIRFSTKESATHAI-VAVH 102
TVY G L+ +T+ + + F G I+E+RV +DKG+ F+R++T + A AI +
Sbjct: 269 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNA 328
Query: 103 NTDINGQPVKCSWGKE 118
+ + ++CSWG +
Sbjct: 329 QPFLFSRQIRCSWGNK 344
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKG-YAFIRFSTKESATHAIVAVHNT 104
+VY G + T +TE L+Q+ F G I+ ++ KDK Y F+ + + A+ AI+ ++
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGR 123
Query: 105 DINGQPVKCSWGKESGDPNNSQA 127
I GQP+K +W +G ++ +
Sbjct: 124 HIFGQPMKVNWAYATGQREDTSS 146
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/82 (20%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKES 93
+ ++S+ ++ G L+ +T+ + +F F + + RV D +G+ F+ F ++
Sbjct: 142 EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQD 201
Query: 94 ATHAIVAVHNTDINGQPVKCSW 115
A AI ++ ++ + ++C+W
Sbjct: 202 AQTAINEMNGKWVSSRQIRCNW 223
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHN-TD 105
T+Y GGL + + E+ ++ F G I+ IR+ DK AF+ ++++E A A + N
Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 106 INGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTYP 159
INGQ +K +WG+ D + + QG + + P PP Y +P
Sbjct: 289 INGQRLKLTWGRPKPDQDGANQQGGVAHSGLLPRAVISQQHNQPPPMQQYYMHP 342
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 65.3 bits (152), Expect = 4e-11
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG SR++R AT + + + ++ N T++ GGL + +T+E
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
+++ F FG I +++ KG F++F + +A A+ ++ T I Q V+ SWG+
Sbjct: 321 DLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR--- 377
Query: 121 DPNNSQAQGQLGGTAYSPF--GTAYTASG 147
+P N Q + + G P+ G Y G
Sbjct: 378 NPANKQPRDKYGNQWVDPYYGGQFYNGYG 406
Score = 35.9 bits (79), Expect = 0.025
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 27 LNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTF-QPFGTIQEIRVFKD----- 80
LN + E +++ + +++ G L +++ L+ +TF + + +++ +V D
Sbjct: 180 LNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGR 239
Query: 81 -KGYAFIRFSTKESATHAIVAVHNTDINGQPVKC-SWGKESGDPNNSQAQGQLGGTAYSP 138
KGY F+RF + T A+ T++NG VKC S G + G Y P
Sbjct: 240 SKGYGFVRFGDENERTKAM-----TEMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMP 292
Query: 139 FGTAYTAS 146
G A+T S
Sbjct: 293 SG-AFTRS 299
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 64.1 bits (149), Expect = 8e-11
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG SR++R AT + + + N T++ GGL + +T+E
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESG 120
+++ F FG I +++ KG F++F + +A A+ ++ T I Q V+ SWG+
Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR--- 375
Query: 121 DPNNSQAQGQLGGTAYSPF--GTAYTASG 147
+P N Q + + G P+ G Y G
Sbjct: 376 NPANKQPRDKYGNQWVDPYYGGQFYNGYG 404
Score = 37.1 bits (82), Expect = 0.011
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 27 LNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTF-QPFGTIQEIRVFKD----- 80
LN + E +++ + +++ G L+ +++ L+ +TF + + +++ +V D
Sbjct: 178 LNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGR 237
Query: 81 -KGYAFIRFSTKESATHAIVAVHNTDINGQPVKC-SWGKESGDPNNSQAQGQLGGTAYSP 138
KGY F+RF + T A+ T++NG VKC S G + G Y P
Sbjct: 238 SKGYGFVRFGDENERTKAM-----TEMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMP 290
Query: 139 FGTAYTASG 147
GT G
Sbjct: 291 NGTLTRPEG 299
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 61.7 bits (143), Expect = 4e-10
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG +R +R A K + +S + V + +N TV+ GGL +T++
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVT-GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWG---- 116
++ F +G I +++ K F++FS K A A+ ++ + G V+ SWG
Sbjct: 276 HLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPS 335
Query: 117 -KESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASY 153
K+SGDP +Q GG YT P A Y
Sbjct: 336 NKQSGDP----SQFYYGGYGQGQEQYGYTMPQDPNAYY 369
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 47 TVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKESATHAIV 99
T++ G L +T+ ++ +TF+ + +++ +V D KGY F+RFS + A+
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 100 AVHNTDINGQPVK 112
++ + +P++
Sbjct: 216 EMNGVPCSTRPMR 228
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHN-TD 105
T+Y GGL + + E+ ++ F G I+ IR+ +K AF+ ++T+E A A + N
Sbjct: 229 TLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 106 INGQPVKCSWGK---ESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTYP 159
+NGQ +K +WG+ D + S QG + + P PP Y +P
Sbjct: 289 VNGQRLKLTWGRPQVPKPDQDGSNQQGSVAHSGLLPRAVISQQQNQPPPMLQYYMHP 345
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAI 98
+ ++N T++ GG+ + +E +++ F FG + +++ KG F++F+ ++SA AI
Sbjct: 314 SDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAI 373
Query: 99 VAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLG 132
+++ T I V+ SWG+ N Q +G G
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSP----NKQWRGDSG 403
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 47 TVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKESATHAIV 99
+V+ G L+ +T+ L+ +TF + +++ +V D KGY F+RF + + A+
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 100 AVH 102
++
Sbjct: 263 EMN 265
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIV 99
+S + T+ L +TEE ++K F G + +++ KGY +++F T+ SA A+
Sbjct: 231 ESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQ 290
Query: 100 AVHNTDINGQPVKCSWGKESG--------DPNNSQAQGQLG-GTAYSPFGTAYTASGVPP 150
+ I Q V+ SW K G DPN Q G G G Y + AY A+ P
Sbjct: 291 RMQGQVIGQQAVRISWSKNPGQDGWVTQADPN--QWNGYYGYGQGYDAY--AYGAT-QDP 345
Query: 151 ASYWYNTY 158
+ Y Y Y
Sbjct: 346 SVYAYGGY 353
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 47 TVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKESATHAIV 99
+++ G L +T+ L+Q+TF+ + +++ +V D KGY F++F+ + A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 100 AVHNTDINGQPVKCS 114
++ + +P++ S
Sbjct: 177 EMNGLYCSTRPMRIS 191
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
VY GG+ T TE ++ G + E+R+ ++K GYAF+ F +K+ A AI +
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 102 HNTDINGQPVKCS 114
+NTD G+ +KCS
Sbjct: 154 NNTDFRGKRIKCS 166
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 41 SSASNC-TVYCGGLTTGLTEELMQKTFQPFGTIQEIRV------FKDKGYAFIRFSTKES 93
SSAS +Y L +T+E ++ F+ G I ++ + +D Y F+ ++ + S
Sbjct: 262 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 321
Query: 94 ATHAIVAVHNTDINGQPVKCSWGKESGD 121
A+ +I+G + C+ K D
Sbjct: 322 VMRALKNTERYEIDGHMLDCTLAKPQAD 349
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 54.0 bits (124), Expect = 9e-08
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
+NG GS+ + A +K A + +L + + A +Y + +TEE
Sbjct: 261 VNGTKFGSKCLYVGRAQKK--AEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 61 LMQKTFQPFGTIQEIRVF-----KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
++K F GTI ++ K KG+ F+ FST E A A+ H +G+P+ +
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 116 GKESGDPNNSQAQGQLGG--TAYSPFGTAYTASGVPPASYWYNTYP 159
++ D Q Q Q G A +A G Y+ NT+P
Sbjct: 379 AQKKED-RKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHP 423
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESA 94
SS ++Y G L +TE ++ F F ++ +R+ KD Y + F +++ A
Sbjct: 19 SSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDA 78
Query: 95 THAIVAVHNTDINGQPVKCSWGKESGD 121
AI +N+ +NG+ ++ W + D
Sbjct: 79 NLAIEKKNNSLLNGKMIRVMWSVRAPD 105
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
+Y L ++E+L+++ F FG I + + KD +GYAF+ F E A A V+
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 103 NT 104
T
Sbjct: 263 GT 264
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL + EE ++ + G I E+R+ KD KGYAF+ F TK+ A AI +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 102 HNTDINGQPVKCS 114
H+ + G+ ++CS
Sbjct: 178 HSKEFKGKTIRCS 190
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 38 YNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKES 93
++ ++A +Y + + E +++ FQ G + +I KG + F+ ++ + S
Sbjct: 284 HSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSS 343
Query: 94 ATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLG 132
A A+ ++NGQP++ K + + + G
Sbjct: 344 ALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYG 382
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKE 92
+ SS +Y GL+ TE+ ++ TF+ FG + + + DK G+AF+R+ T+E
Sbjct: 70 SSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
Query: 93 SATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQ 126
A AI +H ++G+ + K D + ++
Sbjct: 130 EAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 48.4 bits (110), Expect = 4e-06
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
+NG + R I+ N T KP A +L S + D + S VY G L +T+E
Sbjct: 137 LNGNTVEGREIKVN-ITEKPIASSPDL-SVLQSEDSAFVDSPYK---VYVGNLAKTVTKE 191
Query: 61 LMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
+++ F G + +V K G+ F+ FS++E AIVA++N+ + GQ ++
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 249
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 48.4 bits (110), Expect = 4e-06
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
V+ GGL + M++ F+ FG I E + DK GY F+ F +SAT A VA
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRA-VAD 77
Query: 102 HNTDINGQPVKC---SWGKESGDPNNSQAQGQLGGTAYSPFG--TAYT--ASGVPPASYW 154
N I+G+ C S+G+ P+ + +GQ G + G + YT A+ +PPA+
Sbjct: 78 PNPVIDGRKANCNIASFGRPR--PSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLPPAAAP 135
Query: 155 YNTYP 159
YP
Sbjct: 136 QLMYP 140
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 48.4 bits (110), Expect = 4e-06
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
V+ GGL + M++ F+ FG I E + DK GY F+ F +SAT A VA
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRA-VAD 77
Query: 102 HNTDINGQPVKC---SWGKESGDPNNSQAQGQLGGTAYSPFG--TAYT--ASGVPPASYW 154
N I+G+ C S+G+ P+ + +GQ G + G + YT A+ +PPA+
Sbjct: 78 PNPVIDGRKANCNIASFGRPR--PSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLPPAAAP 135
Query: 155 YNTYP 159
YP
Sbjct: 136 QLMYP 140
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRF 88
D ++ + ++ G L G +EE ++K F G + E+R+ K+ KG AF+RF
Sbjct: 203 DVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRF 262
Query: 89 STKESATHAIVAVHNTDINGQPVKC 113
+T E A A+ + + ING+ KC
Sbjct: 263 ATVEQAKRAVKELKSPMINGK--KC 285
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/80 (20%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 33 TFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFI 86
+F ++ ++ A T++ GL EE ++ +P+G ++++ + ++ K + F+
Sbjct: 378 SFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFV 437
Query: 87 RFSTKESATHAIVAVHNTDI 106
F T E+A ++N+++
Sbjct: 438 TFDTHEAAVSCAKFINNSEL 457
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 26 ELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGT--IQEIRVFKD--- 80
EL S + + +S N T++ G + T E +++ + +G + +I + +D
Sbjct: 274 ELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNN 333
Query: 81 ----KGYAFIRFSTKESATHA 97
+GYAF+ FS++ A A
Sbjct: 334 VNMNRGYAFLEFSSRSDAMDA 354
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 18 RKPPAPKNELNSK-PLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIR 76
+K + EL K + E ++S SN +Y L +T++ +++ F PFGTI +
Sbjct: 300 QKKSERETELKQKFEQSLKEAADKSQGSN--LYVKNLDESVTDDKLREHFAPFGTITSCK 357
Query: 77 VFKD-----KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGD 121
V +D +G F+ FST E AT AI ++ I +P+ + + D
Sbjct: 358 VMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKED 407
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVA 100
++Y G L +T+ + + F G + +RV +D GY ++ ++T + A+ A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 101 VHNTDINGQPVK 112
++ +NG+ ++
Sbjct: 106 LNFMALNGRAIR 117
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
++ L + + + +TF FG I +V D KGY F+++ T E+A AI ++
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 103 NTDINGQPV 111
+N + V
Sbjct: 195 GMLLNDKQV 203
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
VY L+ L++E + K F FG + +D KG+ F+ F + A A+ A++
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
+Y GGL+ G E ++ F F + E RV +K GY F+ F +++SA AI A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 102 HNTDINGQPVKCSWGKE 118
+ ++NG + + K+
Sbjct: 93 NGQELNGFNISVNVAKD 109
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GGL+ G + ++ F FG + + +V D+ G+ F+ F+ + +AT AI +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASG 147
++NG+ ++ + + P+ +A G GG +Y G Y G
Sbjct: 97 DGKELNGRHIRVNPANDR--PSAPRAYGGGGGYSYGGGGGGYGGGG 140
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
+ TVY GGL L+EEL+ + F G + + V KD+ Y FI + ++E A +AI
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 99 VAVHNTDINGQPV---KCSWGKESGD 121
++ ++G+P+ K S K+S D
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLD 109
Score = 31.5 bits (68), Expect = 0.55
Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 26 ELNSKPLTFDEVYNQSSASN--CTVYCGGLTTGLTEELMQKTFQPFGTI-QEIRVFKD-- 80
+L+ KP+ ++ + + ++ G L + E+L+ TF FG I ++ +D
Sbjct: 90 KLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPD 149
Query: 81 ----KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE---SGDPNNSQAQGQLGG 133
+G+ FI + + E++ AI ++ ++ + + S+ + G+ + + A+ L
Sbjct: 150 TGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAA 209
Query: 134 T 134
T
Sbjct: 210 T 210
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 49 YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVH 102
+ GGL +E +Q+TF FG + + ++ D +G+ F+ F +++ AI ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 103 NTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASG 147
+++G+ + + + G +G GG S G Y+ G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGG 113
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 49 YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVH 102
+ GGL +E +Q+TF FG + + ++ D +G+ F+ F +++ AI ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 103 NTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASG 147
+++G+ + + + G +G GG S G Y+ G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGG 113
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GGL+ G + +++ F FG + E V D+ G+ F+ FS ++SA +AI +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 102 HNTDINGQPVKCSWGKE-SGDPNNSQAQG 129
++NG+ ++ + E S P +S G
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSFGGG 125
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GGL+ G + +++ F FG + E V D+ G+ F+ FS ++SA +AI +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 102 HNTDINGQPVKCSWGKE-SGDPNNSQAQG 129
++NG+ ++ + E S P +S G
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSFGGG 125
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAV 101
+VY GGL +TEE +++ F +G++ +++ D K Y F+ FS + SA AI +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 102 HNTDINGQPVK 112
I G+ V+
Sbjct: 68 DGKSIGGRAVR 78
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFS 89
E ++++ ++ TVY G ++ TEE + + F G I++I + DK G+ F+ F
Sbjct: 24 EEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFY 83
Query: 90 TKESATHAIVAVHNTDINGQPVKC--SWGKESGDPNNSQAQGQLGGTAYSPFGTAY 143
++E A+ + T ++ +P++ WG + G +G+ GG + T Y
Sbjct: 84 SREDTEDAVKYISGTILDDRPIRVDFDWGFQEG---RQWGRGRSGGQVRDEYRTDY 136
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GGL+ G + ++ F FG + + +V D+ G+ F+ F+ + +AT AI +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASG 147
++NG+ ++ + + P+ +A G GG YS G Y G
Sbjct: 97 DGKELNGRHIRVNPANDR--PSAPRAYG--GGGGYSGGGGGYGGGG 138
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 23 PKNELNSKPLTFDEVYNQSSAS-NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK 81
P++ ++S + SSAS + ++ GGL+ + E+ ++ F FG + E+R+ DK
Sbjct: 17 PQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDK 76
Query: 82 ------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
G+ F+ F+ + A A A+ + G+P++ S+ E
Sbjct: 77 GSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALE 119
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 7e-05
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
V+ GGL + M++ F FG I E + DK GY F+ F +SAT A VA
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA-VAD 77
Query: 102 HNTDINGQPVKC---SWGKESGDPNNSQAQGQLGGTAYSPFG--TAYTASGVP 149
N I+G+ C S+G+ P+ + +GQ G + G ++YT P
Sbjct: 78 PNPVIDGRKANCNIASFGRPR--PSTPRGRGQGGSPSQYQGGGQSSYTGMAAP 128
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 27 LNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFI 86
L+ KP D+ QS+ ++ G LT TE + + F +G I I V+ +G+AFI
Sbjct: 3 LSMKPFRADDSGFQSN----NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI 58
Query: 87 RFSTKESATHAIVAVHNTDINGQPVKC 113
+ E A A A+ ++NG C
Sbjct: 59 YYRHVEEAVAAKEALQGANLNGTNELC 85
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 5 WLGSRSIRTNWATRKPPAP-KNELNSKPLTFDEVYNQSSASNC-TVYCGGLTTGLTEELM 62
WL + + W R+ P +N L +P F + + A C +++ GG+ ++++ +
Sbjct: 209 WLDASGRQITWLLRRLTLPIRNALFEEPCLF--LNSHPYAKPCKSLWVGGIGPNVSKDDL 266
Query: 63 QKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHA 97
++ F FG I++ R +++ AFI + + A A
Sbjct: 267 EEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA 301
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD----KGYAFIRFSTKESATHAIVAVHN 103
+Y L + +T +++ F PFG+I +V ++ KG+ F++F T++SA A A+H
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 104 TDINGQ 109
+ + G+
Sbjct: 174 SMVYGK 179
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQ---PFGTIQEIR---VFKDKGYAFIRFSTKE 92
+Q S+ ++Y G L+ +TE+ + F P ++ R K YA+I F +
Sbjct: 14 HQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPF 73
Query: 93 SATHAIVAVHNTDINGQPVKCSWGK 117
SA++A+ ++++D+ G+ ++ W +
Sbjct: 74 SASNAMTRLNHSDLKGKAMRIMWSQ 98
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKES 93
NQ S + VY L +T++ + F +GT+ + V +D +G+ F+ F E+
Sbjct: 198 NQDSTN---VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPEN 254
Query: 94 ATHAI 98
A A+
Sbjct: 255 AKKAM 259
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 3 GQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELM 62
G LGS+ + A +K + E+ + + D + + +Y L+ + E +
Sbjct: 264 GLQLGSKKLFVGKALKKDE--RREMLKQKFS-DNFIAKPNMRWSNLYVKNLSESMNETRL 320
Query: 63 QKTFQPFGTIQEIRVF-----KDKGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
++ F +G I +V + KG+ F+ FS E + A ++ ++G+P+
Sbjct: 321 REIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAV 101
++Y G + T E +Q+ FQ GT+ + + D KG+A++ F E+ ++++ +
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI-L 162
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPF-GTAYTASGVPPASY 153
+ ++++G+ +K S K + P Q +G+ G + P G PP +Y
Sbjct: 163 NESELHGRQIKVS-AKRTNVPGMRQFRGR--GRPFRPMRGFMPGVPFYPPYAY 212
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 36 EVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFST 90
E ++ +SN +Y L +++E +++ F PFGT+ +V +D KG F+ F+T
Sbjct: 124 EAADKFQSSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFAT 181
Query: 91 KESATHAIVAVHNTDINGQPV 111
E AT A+ + I +P+
Sbjct: 182 PEEATEAMSQLSGKMIESKPL 202
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFS 89
D N++ +N VY L T++ ++ F +G I V KD KG+ F+ F
Sbjct: 20 DSTANKTKFTN--VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 77
Query: 90 TKESATHAIVAVH 102
+ A A+ +++
Sbjct: 78 NADDAARAVESLN 90
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWG-K 117
E M++ F+P+G + +R+ ++ +AF++F+T+E AT A+ + HN+ + + V + +
Sbjct: 83 ERDMERHFEPYGKVLNVRMRRN--FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALR 140
Query: 118 ESGDPNNSQA 127
E+G+ + A
Sbjct: 141 EAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWG-K 117
E M++ F+P+G + +R+ ++ +AF++F+T+E AT A+ + HN+ + + V + +
Sbjct: 109 ERDMERHFEPYGKVLNVRMRRN--FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALR 166
Query: 118 ESGDPNNSQA 127
E+G+ + A
Sbjct: 167 EAGEREDRYA 176
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDI- 106
VY G +++ F FG ++ RV GYAF+ F + A AI NT
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVK--RVDMKSGYAFVYFEDERDAEDAIRRTDNTTFG 61
Query: 107 -NGQPVKCSWGK----ESGDPNNSQA 127
+ + W K E G P + +A
Sbjct: 62 YGRRKLSVEWAKDFQGERGKPRDGKA 87
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
+Y G L ++E+ ++K F+ FG+++ ++V +D KG+ F++F+ E A +A+
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNG 346
Query: 103 NTDINGQPVKCS 114
+I G+ +K S
Sbjct: 347 QLEIAGRAIKVS 358
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHA 97
S+ ++ GG++ E +++ F +G + + ++ D+ G+AF+ F++ E A++A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 98 IVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASY 153
+ + D++G+ ++ ++ E G + G GG +G + G P Y
Sbjct: 92 -MQLDGQDLHGRRIRVNYATERGSGFGGRGFGGPGG----GYGASDGGYGAPAGGY 142
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
E ++K F+P+G + +R+ + ++F++F T+E AT A+ A + I + V + +
Sbjct: 107 EHDIEKHFEPYGKVTNVRI--RRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALK 164
Query: 119 SGDPNNSQAQGQLGGTAYSP 138
D + + G+ + SP
Sbjct: 165 DDDERDDRNGGRSPRRSLSP 184
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
V+ G + +++ F +G + RV GYAF+ F + A AI + N
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVD--RVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 108 GQPVKCS--WGK-ESGDP 122
+ + S W K E G P
Sbjct: 62 YEKRRLSVEWAKGERGRP 79
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESA 94
S + + T++ G++ TEE + + F +G + ++ V DK G+A++ FS+KE A
Sbjct: 16 SRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEA 75
Query: 95 THAIVAVHNTDINGQPV 111
A++ ++ ++G+ V
Sbjct: 76 EKALLELNAQLVDGRVV 92
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 52 GLTTGLTEELMQKTFQPFGT-IQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQP 110
GL+ T++ +++ F PF I++ + + KG+ FI F +++ A A+ A++ +NG+
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136
Query: 111 VKCSWGKESGDPNNS 125
+ KE P S
Sbjct: 137 IFVETAKEVEAPTTS 151
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDKG---YAFIRFSTKESATHAIVAVHN-TDING 108
+ + + E+ ++ F P+G I+ I +F +G AF+ ++T+ +A A++ + + TDI G
Sbjct: 85 INSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRLAAEKAMLELSSWTDIKG 144
Query: 109 QPVKCSWG 116
Q VK WG
Sbjct: 145 QRVKLLWG 152
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.1 bits (92), Expect = 7e-04
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 35 DEVYNQSSASN-CT-VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GYAFIR 87
D+V S+ CT ++ + T+ +++ F PFG I+ +R+ K GYAF+
Sbjct: 656 DKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVE 715
Query: 88 FSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQA 127
F TK+ A +A A+ +T G+ + W + D N+ +A
Sbjct: 716 FVTKQEALNAKKALASTHFYGRHLVLEW---ANDDNSMEA 752
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 58 TEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQ 109
TEE + + F FG I E+ + DK G A+I + E A A+ + N+ G+
Sbjct: 273 TEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGR 330
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 37 VYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFST 90
++N AS V L +E+ +++ F FG I E+++ KD KGYAFI+F++
Sbjct: 33 LFNYPLASKIMVR--NLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTS 90
Query: 91 KESATHAIVAVHNTDINGQPV 111
++ A AI + NG+ +
Sbjct: 91 QDDAFLAIETMDRRMYNGRMI 111
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GL+ +E+ ++ F+ FG + E+++ DK GYAF+ ++T+E+A A+ +
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 102 HNTDING 108
+ ING
Sbjct: 344 NGKIING 350
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK------DKGYAFIRFSTKESATHAIV 99
CT++ G L+ TE+ +++ +G I+ +R+ + +GY F+ + T++ A
Sbjct: 64 CTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYE 123
Query: 100 AVHNTDINGQPVKCSWGKESGDPN--NSQAQGQLGG 133
H++ I+G+ + + ++ P + G LGG
Sbjct: 124 DAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGG 159
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 9e-04
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 7/157 (4%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG + + + A RK + +L +K + + + +Y L +
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTE-DLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 61 LMQKTFQPFGTIQEIRVFK-----DKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
+++ F FGTI +V KG F+ FST E A+ A++ ++ + +P+ S
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 116 GKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
+ + + Q Q SP + V PA+
Sbjct: 298 A-QCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPAT 333
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/102 (19%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GG+ + + ++ ++ F FG ++E ++ +D +G+ F+ + +++ H +
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKG 191
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAY 143
+ +++G V+ E PN+ + G + S FG Y
Sbjct: 192 NRIELSGTQVEIK-KAEPKKPNSVTTPSKRFGDSRSNFGGGY 232
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDIN 107
++ G L G+ E + F FG ++ + + YAF+ F+ E A AI ++ ++
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLS 84
Query: 108 GQPVKCSWGKESGDPNNSQ 126
G P++ + K S+
Sbjct: 85 GNPLRIEFAKAEKSSTGSR 103
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
+ L++ F FG I ++ VF + YAF++F +A A ++ V + K
Sbjct: 165 DALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAK- 223
Query: 119 SGDPNNSQAQGQLGGTAYSP 138
+P++S + G + SP
Sbjct: 224 -SEPSSSGSGRGPSGRSLSP 242
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 SKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GY 83
S PL V + N ++Y G L +TE + F+ + +RV +D+ GY
Sbjct: 32 SIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGY 91
Query: 84 AFIRFSTKESATHAIVAVHNTDINGQPVK 112
A+I FS A A+ A++ T + +P++
Sbjct: 92 AYINFSNPNDAYRAMEALNYTPLFDRPIR 120
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
++ L + + + +TF FGTI +V D KGY F++F +ESA AI ++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 103 NTDINGQPV 111
+N + V
Sbjct: 198 GMLMNDKQV 206
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG-----YAFIRFSTKESATHAI 98
VY L + E+ ++KTF FG I V +D+ + F+ F E+A A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEE 60
MNG +R +R A K + +S + V + +N TV+ GGL +T++
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVT-GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
Query: 61 LMQKTFQPFGTIQEIRVFKDKGYAFIRFSTK 91
++ F +G I +++ K F++FS K
Sbjct: 276 HLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 47 TVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD------KGYAFIRFSTKESATHAIV 99
T++ G L +T+ ++ +TF+ + +++ +V D KGY F+RFS + A+
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 100 AVHNTDINGQPVK 112
++ + +P++
Sbjct: 216 EMNGVPCSTRPMR 228
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAV 101
+VY G + T E +Q FQ GT+ + + D KG+A++ F E+ A+ +
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEAL-QL 148
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTY 158
+ ++++G+ +K S K + P Q G G + VPP Y+Y+ Y
Sbjct: 149 NESELHGRQLKVS-PKRTNVPGMKQYH---PGRFNPSMGYRFRRPFVPP--YFYSPY 199
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAV 101
+VY G + T E +Q FQ GT+ + + D KG+A++ F E+ A+ +
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEAL-QL 148
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTY 158
+ ++++G+ +K S K + P Q G G + VPP Y+Y+ Y
Sbjct: 149 NESELHGRQLKVS-PKRTNVPGMKQYH---PGRFNPSMGYRFRRPFVPP--YFYSPY 199
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKE 92
N A ++ GGL + +TE + F FGTI ++ V D +G+ FI F ++E
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Query: 93 SATHAIVAVHNT--DINGQ--PVKCSWGKE--SGDPNNSQAQG 129
S + +H T ++NG+ VK + KE S PN S G
Sbjct: 175 SVD---MVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIG 214
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKES 93
Q S + G+ EE + F FG I+ + + D KGYA I + KE
Sbjct: 89 QRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEE 148
Query: 94 ATHAIVAVHNTDINGQPVKCSWGKESG 120
A AI A++ ++ Q V W SG
Sbjct: 149 AQSAISAMNGAELLTQNVSVDWAFSSG 175
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.9 bits (89), Expect = 0.002
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL +E M+K F+ FG I E V D KGY F+ F E+A A V
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 102 HNTDINGQPVKC---SWGKESGDPN--NSQAQGQLGGTAYSPFGTAYTASGVPP 150
I+G+ C S G + P+ N G++ T T G PP
Sbjct: 75 -TPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVM-MSTMQTGFGPPP 126
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.9 bits (89), Expect = 0.002
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL +E M+K F+ FG I E V D KGY F+ F E+A A V
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 102 HNTDINGQPVKC---SWGKESGDPN--NSQAQGQLGGTAYSPFGTAYTASGVPP 150
I+G+ C S G + P+ N G++ T T G PP
Sbjct: 75 -TPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVM-MSTMQTGFGPPP 126
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.9 bits (89), Expect = 0.002
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL +E M+K F+ FG I E V D KGY F+ F E+A A V
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 102 HNTDINGQPVKC---SWGKESGDPN--NSQAQGQLGGTAYSPFGTAYTASGVPP 150
I+G+ C S G + P+ N G++ T T G PP
Sbjct: 75 -TPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVM-MSTMQTGFGPPP 126
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
++ GGL+ +TE ++ TF +G I E ++ + +G+ FI F+ + A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 102 HNTDINGQPV 111
H ++ + +
Sbjct: 74 HGRELGNKVI 83
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
++ GGL+ +TE ++ TF +G I E ++ + +G+ FI F+ + A AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 102 HNTDINGQPV 111
H ++ + +
Sbjct: 74 HGRELGNKVI 83
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
++ GGL+ +T+ +++ F FG I + ++ + +G+ FI F+ + + +I +
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGG--TAYSPFGTAYTASG 147
H D + + + + ++ ++ G GG + YS G G
Sbjct: 69 HGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGG 116
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATH 96
+S ++ G + TEE ++ F+ G + E+ + KDK G F++++T + A
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 97 AIVAVHN 103
AI A+HN
Sbjct: 177 AIRALHN 183
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
++ G L TE+ +++ F FG ++++ + +D +G F+++S+KE+A AI ++
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 103 NT 104
T
Sbjct: 273 GT 274
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATH 96
+S ++ G + TEE ++ F+ G + E+ + KDK G F++++T + A
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 97 AIVAVHN 103
AI A+HN
Sbjct: 177 AIRALHN 183
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
++ G L TE+ +++ F FG ++++ + +D +G F+++S+KE+A AI ++
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 103 NT 104
T
Sbjct: 273 GT 274
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 37 VYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRV------FKDKGYAFIRFST 90
V Q + T+Y GGL + E ++ F PFG I++++ K + + F+ F
Sbjct: 4 VQQQQAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLE 63
Query: 91 KESATHAIVAVHNTDINGQ 109
+E A+ A+ + ++ G+
Sbjct: 64 REDASAAMDNMDGAELYGR 82
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVK 112
++ + TFQPFG + +VF DK + FI + ++ +A +AI ++ ++G+ +K
Sbjct: 352 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLK 411
Query: 113 CSWGKESGDPNNSQ 126
+++G Q
Sbjct: 412 VQLKRDNGQQQQQQ 425
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-----DKGYAFIRFSTKESATHAIVAVH 102
++ G L ++E +Q F +GTI+++++ + KG F+++ +KE A A+ A++
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 103 NTDI 106
I
Sbjct: 171 GRHI 174
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ G + +TE + F+ F + E+ + K+K G F+ T+E A I +
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 102 HN 103
HN
Sbjct: 74 HN 75
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVK 112
++ + TFQPFG + +VF DK + FI + ++ +A +AI ++ ++G+ +K
Sbjct: 343 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLK 402
Query: 113 CSWGKESGDPNNSQ 126
+++G Q
Sbjct: 403 VQLKRDNGQQQQQQ 416
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-----DKGYAFIRFSTKESATHAIVAVH 102
++ G L ++E +Q F +GTI+++++ + KG F+++ +KE A A+ A++
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 161
Query: 103 NTDI 106
I
Sbjct: 162 GRHI 165
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ G + +TE + F+ F + E+ + K+K G F+ T+E A I +
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 102 HN 103
HN
Sbjct: 74 HN 75
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 27 LNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------ 80
LN+ + + YN++ ++ GGL LT+E ++ F+ +G + ++ + D
Sbjct: 95 LNTSRSSGGDAYNKTKK----IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRP 150
Query: 81 KGYAFIRFSTKESATHAIVAVHNTDINGQ--PVKCSWGKESGDPNNSQAQGQLGGTAYSP 138
+G+ F+ F + E A +++ D++G+ VK + K++ ++ G G Y
Sbjct: 151 RGFGFVSFDS-EDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQG 209
Query: 139 FG 140
+G
Sbjct: 210 YG 211
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GG++ E+ +++ F +G + + V +DK G+ F+ FS +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 102 HNTDINGQPVKCSWGKE----SGDPNNSQAQGQLGGTAYSPFGTAYTASGVPP 150
H+ D VK + +E SG N GG AY+ + G+PP
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIF-VGGLPP 119
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-----DKGYAFIRFSTKESATHAIVAV- 101
++ G L ++E +Q F +GTI+++++ + KG AF+++ TKE A A+ ++
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 102 --HNTDINGQPVKCSWGKESGDPNNSQAQ 128
H + + P+ W + + + Q
Sbjct: 168 GKHKMEGSTVPLVVKWADTERERHTRRLQ 196
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFK-----DKGYAFIRFSTKESATHAIVAV- 101
++ G L ++E +Q F +GTI+++++ + KG AF+++ TKE A A+ ++
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 102 --HNTDINGQPVKCSWGKESGDPNNSQAQ 128
H + + P+ W + + + Q
Sbjct: 168 GKHKMEGSTVPLVVKWADTERERHTRRLQ 196
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 59 EELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPVK 112
++ + FQ FG + +VF DK + F+ + ++ +A +AI ++ + G+ +K
Sbjct: 362 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLK 421
Query: 113 CSWGKES--GDPNNS 125
++S G P+++
Sbjct: 422 VQLKRDSNNGQPSSN 436
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHA 97
SS S+ T+Y G L + E ++ F +G + +I + + GYAF+ F A A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDA 61
Query: 98 IVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
I D +G ++ G ++ A+G G
Sbjct: 62 IYGRDGYDFDGHHLRVELA-HGGRRSSHDARGSYSG 96
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHA 97
SS S+ T+Y G L + E ++ F +G + +I + + GYAF+ F A A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDA 61
Query: 98 IVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGG 133
I D +G ++ G ++ A+G G
Sbjct: 62 IYGRDGYDFDGHHLRVELA-HGGRRSSHDARGSYSG 96
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 38.7 bits (86), Expect = 0.004
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL + ++ F+ FG I E V D KGY F+ F E+A A V
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 102 HNTDINGQPVKC---SWGKESGDPNNSQAQGQLGGTAY---SPFGTAY--TASGVP-PAS 152
I+G+ C ++G + P +S G +GG SPF T + A+ +P P
Sbjct: 69 APV-IDGRRANCNLAAFGVQRSKP-SSPIHGHVGGRGMKVTSPFKTHFGTAATAIPSPLP 126
Query: 153 YWYNTYP 159
+ + T P
Sbjct: 127 FSHYTLP 133
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 38.7 bits (86), Expect = 0.004
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL + ++ F+ FG I E V D KGY F+ F E+A A V
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 102 HNTDINGQPVKC---SWGKESGDPNNSQAQGQLGGTAY---SPFGTAY--TASGVP-PAS 152
I+G+ C ++G + P +S G +GG SPF T + A+ +P P
Sbjct: 69 APV-IDGRRANCNLAAFGVQRSKP-SSPIHGHVGGRGMKVTSPFKTHFGTAATAIPSPLP 126
Query: 153 YWYNTYP 159
+ + T P
Sbjct: 127 FSHYTLP 133
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
VY G L+ T++++++ F +G + + V +D+ G+ F+ +S+ A A+ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 102 HNTDINGQPV 111
++NG+ V
Sbjct: 65 DGKELNGRRV 74
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 52 GLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTD 105
GL EE+++ F I+++R+ +DK G+AF+ F + E AT A+ A + T
Sbjct: 464 GLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTA 523
Query: 106 I--NGQPVKCSWGK 117
+ NG+ ++ ++ K
Sbjct: 524 LERNGKILRVAYAK 537
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 34 FDEVYNQ---SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYA 84
+++ +NQ S+ + TV GL+ TEE + + +G + +RV ++ +G+A
Sbjct: 283 YEDRHNQDHFSATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 85 FIRFSTKESATHAIVAVHNTDI--NGQPVKCSWGKESGDPNNSQAQGQLGGTAY 136
FI F T ++A + + + I +G+ + + + +G S+ Q +Y
Sbjct: 343 FIDFPTVDAARTMMDRIEHDGIVLDGRKLMFHYSQPTGRAGVSRRQEHASRRSY 396
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ L+ T++ +++ F PFG I+E R+ +D KG+ FI F +++ A A+ ++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 102 HNTDINGQ 109
++G+
Sbjct: 69 DGKIVDGR 76
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 45 NCTVYCGGLTTGLTEELMQKT----FQPFGTIQEI---RVFKDKGYAFIRFSTKESATHA 97
N T+Y L + + ++K+ F FG I EI + FK KG A++ F ESA+ A
Sbjct: 17 NQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTA 76
Query: 98 IVAVHNTDINGQPVKCSWGKESGD 121
I ++N + ++ + K D
Sbjct: 77 IAKMNNFPFYDKEMRIQYAKTKSD 100
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY G L +TE ++ F+ FG I+ + V + GYAF+ F A AI V
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK-- 61
Query: 107 NGQPVKCSWGKESGDPNNSQAQGQLGG 133
NG V+ S + G G GG
Sbjct: 62 NGWRVEQSHNRGGGGGRGGGRGGGDGG 88
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY G L +TE ++ F+ FG ++ + V + GYAF+ F + A AI A+
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK-- 61
Query: 107 NGQPVKCSWGKESG 120
NG V+ S + G
Sbjct: 62 NGWRVELSHKDKGG 75
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY G L +TE ++ F+ FG ++ + V + GYAF+ F + A AI A+
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK-- 61
Query: 107 NGQPVKCSWGKESG 120
NG V+ S + G
Sbjct: 62 NGWRVELSHKDKGG 75
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 35 DEVYNQSS--ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFI 86
DE SS +S +++ G + ++E ++K F FG + +++ ++ GY ++
Sbjct: 64 DETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
Query: 87 RFSTKESATHAIVAVHNTDINGQPVKCSWGK 117
F++KE A A+ A++ +G+ + +G+
Sbjct: 124 WFNSKEDAQSAVEAMNGKFFDGRFILVKFGQ 154
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 MQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGD 121
++K F+P+G I +R+ + +AFI++ +E AT A+ A +N+ + + + + + D
Sbjct: 73 LEKHFEPYGKIVNVRI--RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDD 130
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 MQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGD 121
++K F+P+G I +R+ + +AFI++ +E AT A+ A +N+ + + + + + D
Sbjct: 114 LEKHFEPYGKIVNVRI--RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDD 171
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
L+ LT E +++ F GT+ + + K A+I +S E AT A +A++NT++ G+ +
Sbjct: 358 LSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEAT-AALALNNTEVFGRALN 416
Query: 113 CSWGK 117
K
Sbjct: 417 VEIAK 421
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 35 DEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRF 88
D ++ ++ ++CG L + ++++ K F F T +V +D KGY F+ F
Sbjct: 126 DPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
Query: 89 STKESATHAIVAVHNTDINGQPV---KCSWGKESGDPNNSQAQ 128
A+ ++ + +P+ K SW KE D ++ Q
Sbjct: 186 LNPADLAAALKEMNGKYVGNRPIKLRKSSW-KERTDQEAAERQ 227
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL+ TE+ + + F G + E ++ D KG+ F+ F++ + A A++
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 102 HNTDINGQPVKCSWGK 117
+ +NG+ + + K
Sbjct: 96 NGQQLNGRTIFVDYAK 111
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 49 YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVH 102
+ GGL +E +Q+TF FG + + ++ D +G+ F+ F +++ AI ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 103 NTDINGQPVKCSWGKESG 120
+++G+ + + + G
Sbjct: 69 GKELDGRVITVNEAQSRG 86
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL+ EL+++ F FG I + V D +G+ F+ + + E A +A+ A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 102 HNTDINGQ 109
N +++G+
Sbjct: 98 QNKELDGR 105
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHA 97
SS S+ TVY G L + E ++ F +G + +I + + GYAF+ F A A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDA 61
Query: 98 IVAVHNTDINGQPVK---CSWGKESGDPNNSQAQG 129
I D +G ++ G+ S D G
Sbjct: 62 IHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHA 97
SS S+ TVY G L + E ++ F +G + +I + + GYAF+ F A A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDA 61
Query: 98 IVAVHNTDINGQPVK---CSWGKESGDPNNSQAQG 129
I D +G ++ G+ S D G
Sbjct: 62 IHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHA 97
SS S+ TVY G L + E ++ F +G + +I + + GYAF+ F A A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDA 61
Query: 98 IVAVHNTDINGQPVK---CSWGKESGDPNNSQAQG 129
I D +G ++ G+ S D G
Sbjct: 62 IHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TEE + F FGTI ++ V D +G+ FI F + ++ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 172 FH-ELNGKLVE 181
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TEE + F FGTI ++ V D +G+ FI F + ++ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 172 FH-ELNGKLVE 181
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TEE + F FGTI ++ V D +G+ FI F + ++ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 172 FH-ELNGKLVE 181
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GL+ T E ++ F FG + + +V D KG+ F+R++T E + I +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAY 136
++G + + + + Q Q + Y
Sbjct: 118 DGKFLDGWVIFAEYARPREQSQSYQPQNNMSRPPY 152
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.1 bits (82), Expect = 0.011
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDI 106
VY G L +TE ++ F+ FG ++ + V + GYAF+ F A AI A+
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK-- 61
Query: 107 NGQPVKCSWGK-ESGDPNNSQAQGQLGG 133
NG V+ S + E G +G GG
Sbjct: 62 NGWRVEQSHNRGERGGGGRGGDRGGGGG 89
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 60 ELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
+L+ FQ FG + +I + + AF++FS +E A A+ A + + + +K W
Sbjct: 453 DLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRA-PDAVMGNRFIKLWWANRD 511
Query: 120 GDPNNSQAQGQLGGTAYSPFGTAYTASG 147
P+N G G+ S G + TASG
Sbjct: 512 SIPDN----GLSTGSGASMKGRSMTASG 535
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 60 ELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
+L+ FQ FG + +I + + AF++FS +E A A+ A + + + +K W
Sbjct: 453 DLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRA-PDAVMGNRFIKLWWANRD 511
Query: 120 GDPNNSQAQGQLGGTAYSPFGTAYTASG 147
P+N G G+ S G + TASG
Sbjct: 512 SIPDN----GLSTGSGASMKGRSMTASG 535
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 39 NQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKE 92
N + ++ GGL + M++ F+ FG I E V D KGY F+ F E
Sbjct: 15 NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
Query: 93 SATHAIVAVHNTDINGQPVKCS 114
+A A + N I+G+ C+
Sbjct: 75 AAMRACQNM-NPVIDGRRANCN 95
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
+Y L +T+E +++ F FGTI +V +D KG F+ FS A+ + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 103 NTDINGQPV 111
+ G+P+
Sbjct: 390 GKMVGGKPL 398
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIV 99
C++Y G L +T+ + F + +RV +D GY ++ +S + A A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 100 AVHNTDINGQPVKCSWGKESGDPNNS 125
++ + +NG+ ++ ++ S
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRS 131
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 27 LNSKPLTFDEVYNQSSASNCTV---YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD--- 80
LN K + SSA V + L + + + + F GTI +V D
Sbjct: 112 LNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMG 171
Query: 81 --KGYAFIRFSTKESATHAIVAVHNTDINGQPV 111
+GY F++F T++SA +AI ++ +N + +
Sbjct: 172 QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
VY L+ T++ ++ TF +G+I V +D + + F+ F E A A+ A++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 37.1 bits (82), Expect = 0.011
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 27 LNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTF-QPFGTIQEIRVFKD----- 80
LN + E +++ + +++ G L+ +++ L+ +TF + + +++ +V D
Sbjct: 178 LNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGR 237
Query: 81 -KGYAFIRFSTKESATHAIVAVHNTDINGQPVKC-SWGKESGDPNNSQAQGQLGGTAYSP 138
KGY F+RF + T A+ T++NG VKC S G + G Y P
Sbjct: 238 SKGYGFVRFGDENERTKAM-----TEMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMP 290
Query: 139 FGTAYTASG 147
GT G
Sbjct: 291 NGTLTRPEG 299
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIV 99
+SS ++ GGL + + + K F P GT+ + + KG +F S+T+++
Sbjct: 4 KSSGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLT 63
Query: 100 AVHNTDINGQPVKCSW 115
+ +T NG C W
Sbjct: 64 KLFST-YNG----CVW 74
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESA 94
S SNCTVY G + +++ ++ G + ++ + +D KG+AF + T+E A
Sbjct: 2 SGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIA 61
Query: 95 THAI 98
+A+
Sbjct: 62 DYAV 65
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 44 SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHA 97
S T+Y L LT + F FG + + V KD +G AF+ + ++E A A
Sbjct: 55 SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114
Query: 98 IVAVHNTDINGQPVKCSWGKESG 120
++ +NG+ + S ++G
Sbjct: 115 ARSMDAKILNGRKLTVSIAADNG 137
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 36.7 bits (81), Expect = 0.015
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESA 94
SS+ V+ G + TEE +++ G + R+ D KGY F + +E+A
Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
Query: 95 THAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTAS 146
A + + +ING+ ++ + + + ++ Q Q GG P T T S
Sbjct: 64 LSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQ-GGPGL-PSTTTVTES 113
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GYAFIRFSTKESATHAIV 99
N ++Y G L + E + F + +RV +D GYA++ F+ E A+ A+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 103
Query: 100 AVHNTDINGQPVK 112
+++ I +P++
Sbjct: 104 SLNYAPIRDRPIR 116
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
V+ L + + + +TF FGTI +V D KGY F++F +E+A AI ++
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 103 NTDINGQPV 111
+N + V
Sbjct: 194 GMLLNDKQV 202
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 DEVYNQSSA--SNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIR 87
D ++S A S VY L +T++ ++KTF +G I V KD + + F+
Sbjct: 212 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 271
Query: 88 FSTKESATHAI 98
F + E+A A+
Sbjct: 272 FVSPEAAAVAV 282
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKES 93
Q+S +Y G L +T + + F GT+ ++++ DK G+ F+ + E
Sbjct: 110 QASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEE 169
Query: 94 ATHAIVAVHNTDINGQPVKCSW 115
A A+ +++ I G+ VK ++
Sbjct: 170 AKEAMQMFNSSQIGGRTVKVNF 191
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 36.3 bits (80), Expect = 0.019
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 19 KPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQ----E 74
K PAP +E +S T D+ A T++ L T E + +TF+ FG I +
Sbjct: 256 KAPAPVSE-HSSAATIDQ-----QAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQ 309
Query: 75 IRVFKDKG--YAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLG 132
+R ++ KG + F+ F++ E+ + A + I + S ++ G+ +N + + G
Sbjct: 310 VRSYRLKGNCFGFVTFASAEAVKLVLQAHKESAIRIGNRRVSIEEKRGNNDNGRPAMRNG 369
Query: 133 G 133
G
Sbjct: 370 G 370
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.9 bits (79), Expect = 0.025
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATH 96
+ N ++ GG++ EE +++ F FG + E + KD +G+ F+ F+ A
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 97 AIVAVHNTDINGQPVKCSWGKESGDPN--NSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
I HN I+G+ V+ D N N + G+ P T G P+S
Sbjct: 63 VITEKHN--IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSS 118
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TE + F+ FGT ++ V D +G+ FI + ++E+ ++
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 170 FH-ELNGKMVE 179
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.9 bits (79), Expect = 0.025
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATH 96
+ N ++ GG++ EE +++ F FG + E + KD +G+ F+ F+ A
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 97 AIVAVHNTDINGQPVKCSWGKESGDPN--NSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
I HN I+G+ V+ D N N + G+ P T G P+S
Sbjct: 63 VITEKHN--IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSS 118
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TE + F+ FGT ++ V D +G+ FI + ++E+ ++
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 170 FH-ELNGKMVE 179
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TE +K F FG I ++ V D +G+ FI + ++E+ +
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 95 FH-ELNGKMVE 104
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TE +K F FG I ++ V D +G+ FI + ++E+ +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 168 FH-ELNGKMVE 177
Score = 34.3 bits (75), Expect = 0.077
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
+C ++ GG++ +E+ ++ F FG + E + KD +G+ F+ F+ A +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 99 VAVHNTDINGQPVKCSWGKESG---DPNNSQAQGQLGGTAYSPFGTAYTASGVPPASY 153
+ H D K + ++ + +NS QG G + AS V A +
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GGL + +TE +K F FG I ++ V D +G+ FI + ++E+ +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 102 HNTDINGQPVK 112
+ ++NG+ V+
Sbjct: 168 FH-ELNGKMVE 177
Score = 34.3 bits (75), Expect = 0.077
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
+C ++ GG++ +E+ ++ F FG + E + KD +G+ F+ F+ A +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 99 VAVHNTDINGQPVKCSWGKESG---DPNNSQAQGQLGGTAYSPFGTAYTASGVPPASY 153
+ H D K + ++ + +NS QG G + AS V A +
Sbjct: 65 LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
VY GG+ LTE + F +G I ++ + +D KG+AF+ + + S A+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 102 HNTDINGQPVK 112
+ + G+ +K
Sbjct: 98 NGALVLGRTIK 108
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GG++ E L+++ F FG + ++ V ++K G+ F+ FS +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 102 HNTDINGQPVKCSWGKESGDP 122
H+ D VK + +E P
Sbjct: 68 HHIDNRDVDVKRAMSREEQSP 88
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.059
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y G L L ++ + F FG I +V KD KGY F++++ + A A+ A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASY 153
+ G+ + +S P G A P Y S PP +Y
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPP-----IAPPGPPAPQPPTQGYPPSNQPPGAY 588
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.059
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y G L L ++ + F FG I +V KD KGY F++++ + A A+ A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASY 153
+ G+ + +S P G A P Y S PP +Y
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPP-----IAPPGPPAPQPPTQGYPPSNQPPGAY 588
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 35 DEVYNQSS--ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFI 86
DE SS +S +++ G + ++E ++K F FG + +++ ++ GY ++
Sbjct: 45 DETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 104
Query: 87 RFSTKESATHAIVAVH 102
F++KE A A+ A++
Sbjct: 105 WFNSKEDAQSAVEAMN 120
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 34.7 bits (76), Expect = 0.059
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 20 PPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQE--IRV 77
P + K++ + + A ++Y GL T L++ FQ FG I+ I+V
Sbjct: 286 PLSEKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQV 345
Query: 78 FKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYS 137
KG+ F F ESA+ + I PV + K + S A+G G +
Sbjct: 346 RSQKGFCF-GFVEFESASSM-----QSAIEASPVMLNGHKVVVEEKRSTARGNYRGRSTF 399
Query: 138 PFGTAYTASG 147
T Y G
Sbjct: 400 GVNTGYRNEG 409
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 34.7 bits (76), Expect = 0.059
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 79 KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
+ GY F+ F+T+E A +AI ++ +I G+P+ + S
Sbjct: 234 RSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRS 274
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 34.3 bits (75), Expect = 0.077
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
+Y GGL +E + F+ FG I + V D+ GY F+ F ESAT A
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA-CKD 73
Query: 102 HNTDINGQPVKC--SWGKESGDPNNSQ 126
N I G+ C ++ PN SQ
Sbjct: 74 PNPTIEGRITNCKLAFVGAKVKPNQSQ 100
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 34.3 bits (75), Expect = 0.077
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF---KDKGYAFIRFSTKESATHA 97
SS N T+Y G L + + ++ F +G I +I + + GYAF+ F A A
Sbjct: 2 SSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDA 61
Query: 98 IVAVHNTDING--QPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAY--TASGVPPASY 153
I D +G V+ + G P+ + + + Y +G+PP++
Sbjct: 62 IYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSAS 121
Query: 154 W 154
W
Sbjct: 122 W 122
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
++ G T+E ++ F+ +G I+E V D KGY F+ F T++ A A+
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVA- 100
++ GGL++ TEE + F+ FG ++ V D +G+ F+ + +++S + +
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSN 181
Query: 101 VHNTDINGQPVKCSWGKESGDPNNSQA 127
H VK + KE NN A
Sbjct: 182 FHELSDKRVEVKRAIPKEGIQSNNGNA 208
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAV 101
++ GG+ +EE +++ F +G + E V K+K G+ F+RF+ A+
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 102 HNTDINGQPV 111
H I G+PV
Sbjct: 68 H--FILGKPV 75
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 79 KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKE 118
+ GY F+ F TK+ A A++ D G+P++ + K+
Sbjct: 229 RSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQ 268
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL +E M F +G I E + D KGY F+ F ++AT A
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA-CED 77
Query: 102 HNTDINGQPVKCSWGKESG 120
ING+ C+ G
Sbjct: 78 STPIINGRRANCNLASLGG 96
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIV 99
N +Y L T+ + + F +G I++I + D +GYAF++FS KE A AI
Sbjct: 206 NPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIK 265
Query: 100 AVH 102
A++
Sbjct: 266 ALN 268
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 41 SSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESA 94
S+ ++ ++ GL+ T E +Q F FG + + RV D KG+ F+ ++T E A
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDA 88
Query: 95 THAIVAVHNTDING 108
A ++ ++G
Sbjct: 89 EKAKAEMNAKFLDG 102
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 49 YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVH 102
+ GGL E+ +++ F FG + + ++ D KG+ F+ F ++S AI ++
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 103 NTDINGQPV 111
+++G+ +
Sbjct: 107 GQELDGRNI 115
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL E +++ F+ +G I E V D KGY F+ F E+A A A
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA-CAD 84
Query: 102 HNTDINGQPVKCS 114
I+G+ C+
Sbjct: 85 PTPIIDGRRANCN 97
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
V+ GGL E +++ F +G I E V D KGY F+ F E+A A V
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD- 84
Query: 102 HNTDINGQPVKCS 114
I+G+ C+
Sbjct: 85 PTPIIDGRRANCN 97
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAV 101
++Y L ++EE++ F FG + + KD +G+AFI F + +SA A++ +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 102 HNTDINGQPVKC 113
I GQ + C
Sbjct: 78 DGRLI-GQKILC 88
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 3 GQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELM 62
G +G+ +++ A+ K + N+ S P T AS+ T++ + G T++ +
Sbjct: 476 GDTIGNGNVKPA-ASVKEESTTNK--SVPGTLSTTRPLEDASSRTIFVANVHFGATKDSL 532
Query: 63 QKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAI 98
+ F FG + + + D G A+I F+ KE+A +A+
Sbjct: 533 SRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 49 YCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVH 102
+ GGL +E +Q+TF FG + + ++ D +G+ F+ F +++ AI ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 103 NTDING 108
+ G
Sbjct: 69 GSGGGG 74
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 37 VYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFST 90
V S + + ++ G L+ + + + F+ G ++ + V DK G+ F+ ST
Sbjct: 90 VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Query: 91 KESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAY 143
A + + G+P++ + G S ++G G S G Y
Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGY 202
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 37 VYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFST 90
V S + + ++ G L+ + + + F+ G ++ + V DK G+ F+ ST
Sbjct: 90 VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Query: 91 KESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAY 143
A + + G+P++ + G S ++G G S G Y
Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGY 202
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y G L ++E +++ F+ FG ++ +++ D KG+ FI+F E + A +A+
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 102 H-NTDINGQPVKCS 114
+ +I G+ +K S
Sbjct: 327 NGKLEIAGRTIKVS 340
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKES 93
QS +++ ++ G L + + + F+ G ++ + V DK G+ F+ S+
Sbjct: 85 QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSE 144
Query: 94 ATHAIVAVHNTDINGQPVKCSWG-----KESGDPNNSQAQGQLGGTAYSPFGTAYTASG 147
A + +++G+P++ + G +E G ++ G+ Y G + SG
Sbjct: 145 VEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSG 203
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 32.3 bits (70), Expect = 0.31
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 34 FDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIR 87
F+ SS N ++ GL T E ++ F+ +G I E V DK G+ F+
Sbjct: 153 FESADRDSSQRN--IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVL 210
Query: 88 FSTKESATHAIVAVHNTDINGQPVKCSWGK--ESGDPNNSQ 126
F T++ A A+ N + V C + SG P Q
Sbjct: 211 FKTRKGARAALKNPEKRMYN-RTVSCLPARPFNSGKPREQQ 250
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.41
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
+Y GL E + F+ FG I +V D KG+ F+ F ESAT A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 102 HNTDINGQPVKC 113
++T I+G+ V C
Sbjct: 71 NHT-IDGRTVNC 81
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.41
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 19 KPPAPKNELNSKPLTFDEVYNQSSASNCTV-YCGGLTTGLTEELMQKTFQPFGTIQEIRV 77
KP A L P V + TV Y G + G E ++ F FGT++ +RV
Sbjct: 32 KPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRV 91
Query: 78 F------KDKGYAFIRFSTKESATHAIVAVHN 103
K K + FI+F E A A A+++
Sbjct: 92 ARNKKTGKSKHFGFIQFEDPEVAEIAAGAMND 123
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GG+ + +TE+ ++ F +G + E +V +D +G+ F+ F ++E +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 102 HNTDINGQPVKC-SWGKE 118
+ D+ V WG E
Sbjct: 171 NMIDMADTQVSLYKWGLE 188
>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
contains Pfam profile:PF00046 Homeobox domain and Pfam
profile:PF00076 RNA recognition motif
Length = 444
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 52 GLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVH 102
GL + ++ F+ +G+I IR+ KD G + + T ESA AI H
Sbjct: 292 GLPANCSVLELKSRFEIYGSISRIRIHKD-GIGSVSYRTAESAEAAIAGSH 341
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.1 bits (67), Expect = 0.72
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAV 101
++ GG+ + +TE+ ++ F +G + E +V +D +G+ F+ F ++E +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 102 HNTDINGQPVKCSWGKESGDPN------NSQAQGQLGGTAYSPFGTAY 143
+ D+ V+ + N S +G+ +Y+ +G Y
Sbjct: 171 NMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPY 218
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 40 QSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKES 93
+S + TV GL +T +++ F G ++ + +KG +AF++F+ +E
Sbjct: 14 KSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQED 73
Query: 94 ATHAIVAVHNTDINGQPV 111
AI + + + G+ +
Sbjct: 74 VNRAIELKNGSTVGGRRI 91
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 81 KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
KG+AF++F+ K+ A +AI + +P+ W
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDW 406
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVA 100
T++ L +T+E +++ F FG ++ + + K G AF++F T +++ AI A
Sbjct: 562 TLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISA 621
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 31.1 bits (67), Expect = 0.72
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKESATHAIVAVH 102
TVY L +TEE + F G + + R+ D +AFI F+ +E A A+ +
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTAL-NLS 232
Query: 103 NTDINGQPVKCSWGKESGDPNN 124
T + PVK K + P N
Sbjct: 233 GTMLGFYPVKVLPSKTAIAPVN 254
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKESATHAIVAVH 102
TVY + +TEE + F FG + + R+ D +AFI F T E + +
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEF-TDEVGARTALNLS 209
Query: 103 NTDINGQPVKCSWGKESGDPNN 124
T + PVK K + P N
Sbjct: 210 GTMLGFYPVKVMPSKTAIAPVN 231
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKESATHAIVAVH 102
TVY + +TEE + F G + + RV D +AFI F+ +E A A +++
Sbjct: 170 TVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGA-RAALSMS 228
Query: 103 NTDINGQPVKCSWGKESGDPNN 124
T + P+K K + P N
Sbjct: 229 GTVLGFYPLKVLPSKTAIAPVN 250
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
++ GL T E + F+ +G I+E V DK G+ F+ F T++ A A+
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAI 98
++ GL T E + F+ +G I+E V DK G+ F+ F T++ A A+
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK-----GYAFIRFSTKESATHAIVAV 101
TVY L G+T E +++ + G ++ + DK G A + + + A A+
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKY 167
Query: 102 HNTDINGQPVK 112
+N ++G+P+K
Sbjct: 168 NNVLLDGRPMK 178
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 43 ASNCTVYCGGLTTGLTEELMQKTFQPFGTIQ----EIRVFKDKGYAFIRFSTKESATHAI 98
A+N + L T L++ F+ FG I+ E+R + Y F+ F + +A AI
Sbjct: 1073 ANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
Query: 99 VA 100
A
Sbjct: 1133 KA 1134
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 26 ELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQP-FGTIQEIRVFKD---- 80
E P + + Y + + + ++ + +E + F G +Q + V D
Sbjct: 424 ERKPSPQSGESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTR 483
Query: 81 --KGYAFIRFSTKESATHAIVAVHNTDINGQPVK 112
KG AF+ F+TKES A VA+ T +P+K
Sbjct: 484 HPKGTAFVTFATKESVGKA-VALSGTMFYSRPIK 516
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 46 CTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIV 99
C +Y + + FQPFGT+ + V ++ +G ++ + SA AI
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 100 AVHNTDINGQPVK 112
++ T++ G+ ++
Sbjct: 168 SLDGTEVGGREMR 180
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 1 MNGQWLGSRSIRTNWATRKPPAPKNE---LNSKPLTFDEVYNQSSASNCTVYCGGLTTGL 57
++G +G R +R ++ P + LNS P +Q VY G L
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK-----VYVGNLPWFT 223
Query: 58 TEELMQKTFQPFGTIQEIRVFKDKG------YAFIRFSTKESATHAIVAVHNTDINGQPV 111
+ ++ F FGTI RV D+ +AF+ F++ E A ++ + T G+ +
Sbjct: 224 QPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALSFNGTQYEGRRI 282
Query: 112 KCSWGKESGD 121
G E +
Sbjct: 283 IVREGIEKSE 292
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 13 TNWATRKPPAPKNELNSKPLTFDEVYNQSSA-------SNCTVYCGGLTTGLTEELMQKT 65
+NWA + + +T DE + ++ G L + + +
Sbjct: 74 SNWAEEEE-GEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAML 132
Query: 66 FQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAVHNTDINGQ 109
F+ GT++ V + +G+ F+ ST E A A+ ++ ++NG+
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGR 182
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 17 TRKPPAPKNELNSKPLTFDEVYNQSSASN--CTVYCGGLTTGLTEELMQKTFQPFGTI-- 72
+R P P + S+ + +S N T+Y GL+T +T++ ++ F G +
Sbjct: 41 SRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVAS 100
Query: 73 ----QEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQ 109
E R +G+AF+ S+ + A I ++ + + G+
Sbjct: 101 CFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG----YAFIRFSTKESATHAIVAVH 102
TVY + +TEE + F G + + R+ D +AF+ FS + A A+ ++
Sbjct: 129 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSAL-SLG 187
Query: 103 NTDINGQPVK 112
T I PV+
Sbjct: 188 GTMIGYYPVR 197
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 45 NCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD---KGYAFIRFSTKESATHAI 98
N +Y L +T E M F +G I++IR+ D KG AF+ + A +A+
Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAV 74
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 6 LGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKT 65
+GSR A++ P + + ++ ++ S + +Y + L + +
Sbjct: 205 IGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMF 264
Query: 66 FQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
F FG I+E + DK G+ + + ESA A+ H T G + C +
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT-FEGHILHCQKAIDG 323
Query: 120 GDPNNSQ 126
P Q
Sbjct: 324 PKPGKQQ 330
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIR-VF-----KDKGYAFIRFSTKESATHAI 98
++ GL E + + F+ +G I++ + VF K KGY FI + ++ A +A+
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 6 LGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKT 65
+GSR A++ P + + ++ ++ S + +Y + L + +
Sbjct: 205 IGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMF 264
Query: 66 FQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
F FG I+E + DK G+ + + ESA A+ H T G + C +
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT-FEGHILHCQKAIDG 323
Query: 120 GDPNNSQ 126
P Q
Sbjct: 324 PKPGKQQ 330
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIR-VF-----KDKGYAFIRFSTKESATHAI 98
++ GL E + + F+ +G I++ + VF K KGY FI + ++ A +A+
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 6 LGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKT 65
+GSR A++ P + + ++ ++ S + +Y + L + +
Sbjct: 205 IGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMF 264
Query: 66 FQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKES 119
F FG I+E + DK G+ + + ESA A+ H T G + C +
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT-FEGHILHCQKAIDG 323
Query: 120 GDPNNSQ 126
P Q
Sbjct: 324 PKPGKQQ 330
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIR-VF-----KDKGYAFIRFSTKESATHAI 98
++ GL E + + F+ +G I++ + VF K KGY FI + ++ A +A+
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKG 82
T+Y GGL + + E+ + F +G ++ IRV + G
Sbjct: 226 TLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDG 261
>At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative 65% similar to
geranylgeranyl pyrophosphate synthase [GI:413730];
Length = 326
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 31 PLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQ 63
PL+F + + C+ CGGL G TE+ +Q
Sbjct: 212 PLSFVQEKKFGAMGECSAVCGGLLGGATEDELQ 244
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEI-RVFKDKGYAFIRFSTKESATHAIVAVHNT 104
T++ + + + + + F+PFG I+ + K +G+ I + +A A+ A+ NT
Sbjct: 186 TLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT 244
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEI-RVFKDKGYAFIRFSTKESATHAIVAVHNT 104
T++ + + + + + F+PFG I+ + K +G+ I + +A A+ A+ NT
Sbjct: 199 TLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNT 257
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD----KGYAFIRFSTKESATHAIVAVH 102
TVY + +TEE + F G + + R+ D +AFI F+ E A A+
Sbjct: 138 TVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSAL-RKS 196
Query: 103 NTDINGQPVKCSWGKESGDPNN 124
T P++ K + P N
Sbjct: 197 GTMFGSHPIRVFMSKTAIAPVN 218
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVHNTDI 106
L+ E + + F PFG + + V D +G+ F+ F ++E A AI ++
Sbjct: 220 LSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGY 279
Query: 107 NGQPVKCSW 115
+ ++ W
Sbjct: 280 DNLILRVEW 288
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 85 FIRFSTKESATHAIVAVHNTDINGQPVKCSWG 116
+I + +E A I AVH ++G+P+K +G
Sbjct: 120 YITYGKEEEAVRCIQAVHGFILDGKPLKACFG 151
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 28 NSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVF--------- 78
+ +P +FD+ Q++ +Y G L+ + E + +TF FG I +++
Sbjct: 165 SGRPGSFDDGDPQTT----NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
Query: 79 KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNS 125
+ + F+ F + A + + +K WGK P+ +
Sbjct: 221 RQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQA 267
>At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to At2g17970, At2g17960; contains
PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 385
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 81 KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW---GKESGDPNNSQAQGQLG--GTA 135
K AF+ S +S +HA+ + +T + SW G+E G Q + +LG G
Sbjct: 108 KAGAFVFGSLSDSVSHAMPSSQSTVSEAASAQMSWADMGEEDGLEEEDQKENELGSHGVD 167
Query: 136 YSP 138
SP
Sbjct: 168 VSP 170
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
++ G L + + + F+ GT++ V + +G+ F+ S+ + A A+
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 102 HNTDINGQ 109
+ D+NG+
Sbjct: 212 NRYDLNGR 219
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 126 QAQGQLGGTAYSPFGTAYTASGVP 149
QAQGQ GG +S FG A+G P
Sbjct: 883 QAQGQAGGGGFSAFGGNSGATGKP 906
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDI 106
+T T + + F +G + ++ + +D+ G+AF+R+ K+ A A+ + +
Sbjct: 23 ITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVV 82
Query: 107 NGQPVKCSWGK 117
+G+ + + K
Sbjct: 83 DGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 53 LTTGLTEELMQKTFQPFGTIQEIRVFKDK------GYAFIRFSTKESATHAIVAVHNTDI 106
+T T + + F +G + ++ + +D+ G+AF+R+ K+ A A+ + +
Sbjct: 23 ITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVV 82
Query: 107 NGQPVKCSWGK 117
+G+ + + K
Sbjct: 83 DGREITVQFAK 93
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVF------KDKGYAFIRFSTKESATHAIVAV 101
++ G L T+ ++ +G ++E++ F K KGY + F +A+ A+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 102 HNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPAS 152
+ NG+P + +AQ A S A P S
Sbjct: 296 NGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQAQSVIAQAKRGGPADPPS 346
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTI------QEIRVFKDKGYAFIRFSTKESATHAIVA 100
T+Y GL+T +T++ ++ F G + E R +G+AF+ S+ + A I
Sbjct: 72 TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKY 131
Query: 101 VHNTDINGQ 109
++ + + G+
Sbjct: 132 LNQSVLEGR 140
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 47 TVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDK----GYAFIRFSTKESATHAIVAVH 102
TVY + +TEE + F G + + R+ D +AF+ F+ + A H +++
Sbjct: 142 TVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGA-HEALSLG 200
Query: 103 NTDINGQPVK 112
T + PV+
Sbjct: 201 GTMLGFYPVR 210
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding
protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I) from {Rattus norvegicus}
SP|Q00438, {Homo sapiens} SP|P26599, [Homo sapiens]
GI:35770; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 432
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 57 LTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAI 98
++E + + FQPFG I ++ + + K A ++ SA A+
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSAL 58
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
+Y L G+ E +++ F G ++ V D KG A + +S + A A+ +
Sbjct: 88 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 147
Query: 103 NTDINGQPVK 112
+ ++G+P+K
Sbjct: 148 DVQLDGKPMK 157
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
+Y L G+ E +++ F G ++ V D KG A + +S + A A+ +
Sbjct: 24 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 83
Query: 103 NTDINGQPVK 112
+ ++G+P+K
Sbjct: 84 DVQLDGKPMK 93
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 VYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKD-----KGYAFIRFSTKESATHAIVAVH 102
+Y L G+ E +++ F G ++ V D KG A + +S + A A+ +
Sbjct: 90 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 149
Query: 103 NTDINGQPVK 112
+ ++G+P+K
Sbjct: 150 DVQLDGKPMK 159
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 66 FQPFGTIQEIRVF-KDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNN 124
F+ FG ++ + K++G+ + + +A A A+H + G+ + + +P
Sbjct: 231 FKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPKE 290
Query: 125 SQAQGQL 131
+ ++G L
Sbjct: 291 NSSEGAL 297
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 62 MQKTFQPFGTIQEIRVFKD------KGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSW 115
+ + F+PFG + V D +G+ F+ F ++E A AI ++ + ++ W
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEW 249
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 59 EELMQKTFQPFGTIQEIRVFKD--KG----YAFIRFSTKESATHAIVAVHNTDINGQPV 111
+E + F FGT+ V +D G YAFI F KES A + N I+ + +
Sbjct: 256 DEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRI 314
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,227,960
Number of Sequences: 28952
Number of extensions: 186258
Number of successful extensions: 840
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 284
length of query: 246
length of database: 12,070,560
effective HSP length: 79
effective length of query: 167
effective length of database: 9,783,352
effective search space: 1633819784
effective search space used: 1633819784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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