Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001618-TA|BGIBMGA001618-PA|undefined
         (73 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                26   3.8  
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 13  ATTAKLEPAKLLQLPHPALMXXXXXXXXXXXXXXXPNNKLAFIAAFERGNRINKFRNENK 72
           ATT+K  P+  LQ PH AL                P++ L         N    FR+E+K
Sbjct: 481 ATTSKQRPSVTLQQPHRALPSRYNNHTAPFRHATTPHSAL----PSRYNNHTASFRHESK 536


>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 48   PNNKLAFIAAFERGNRINKFR 68
            P    A ++A++RGNR N+FR
Sbjct: 1257 PTECFAKVSAYKRGNRNNEFR 1277


>SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 11 PVATTAKLEPAKLL---QLPHPALM 32
          P+ TT K+EP K L     PHP L+
Sbjct: 35 PMQTTTKIEPPKALLKPLAPHPKLL 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,220
Number of Sequences: 59808
Number of extensions: 41715
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 4
length of query: 73
length of database: 16,821,457
effective HSP length: 51
effective length of query: 22
effective length of database: 13,771,249
effective search space: 302967478
effective search space used: 302967478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)