GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001618-TA|BGIBMGA001618-PA|undefined
         (73 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   2.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     20   3.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    19   5.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    19   5.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    19   7.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        18   9.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 7   AGPIPVATTAKL 18
           AGPIPV+  +K+
Sbjct: 101 AGPIPVSMASKM 112


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 18  LEPAKLLQLPHPA 30
           L   + +QLPHPA
Sbjct: 111 LSHMQFMQLPHPA 123


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 55  IAAFERGNRINKFRN 69
           +AA+  G  + KF+N
Sbjct: 138 VAAWTNGTEVAKFKN 152


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 55  IAAFERGNRINKFRN 69
           +AA+  G  + KF+N
Sbjct: 138 VAAWTNGTEVAKFKN 152


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
          protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 2  TTMTNAGPIPVATTAKLEPA 21
          T +TN G   VA   K  PA
Sbjct: 73 TDITNGGLQKVAALKKTNPA 92


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 55  IAAFERGNRINKFRNEN 71
           +A  E  NRI +++ EN
Sbjct: 112 VATPEVENRIEQYKREN 128


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878
Number of Sequences: 317
Number of extensions: 293
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 114,650
effective HSP length: 45
effective length of query: 28
effective length of database: 100,385
effective search space:  2810780
effective search space used:  2810780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)