GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001618-TA|BGIBMGA001618-PA|undefined
         (73 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    25   8.5  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    25   8.5  
M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein ( C.ele...    25   8.5  
L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated p...    25   8.5  

>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 10  IPVATTAKLEPAKLLQLPHPAL 31
           IPV T AK E  K +++P+P L
Sbjct: 314 IPVYTDAKGETLKTVKIPNPLL 335


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 2    TTMTNAGPIPVATTAKLEPAKLLQLP 27
            T  +N  PIPV TT  L+      LP
Sbjct: 1050 TAASNTTPIPVKTTTTLQTTTATTLP 1075


>M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 429

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 2   TTMTNAGPIPVATTA-KLEPAKLL 24
           T M N  P+P  TTA K++P  +L
Sbjct: 109 TDMQNTAPVPTTTTASKMQPDFIL 132


>L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated
           protein 86, isoform a protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 2   TTMTNAGPIPVATTA-KLEPAKLL 24
           T M N  P+P  TTA K++P  +L
Sbjct: 109 TDMQNTAPVPTTTTASKMQPDFIL 132


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,890
Number of Sequences: 27539
Number of extensions: 32099
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 4
length of query: 73
length of database: 12,573,161
effective HSP length: 53
effective length of query: 20
effective length of database: 11,113,594
effective search space: 222271880
effective search space used: 222271880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)