Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001617-TA|BGIBMGA001617-PA|undefined
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   5.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.6  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   8.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   8.7  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 188 IEKPKCPCESVGDQPKCSSKVKCDCQSQPVKVIFAPAMMPSIYGPVPGIPYLIKPSVKVA 247
           IEK K P  S+ + P+  S+ K    S+  +V+  P      +  VP    +    +K  
Sbjct: 634 IEKGKAPLLSMFEIPRSPSRFKARSPSKAARVLKKPLKKRVRFSEVPTTSSVPPVEIKNK 693

Query: 248 DS 249
           DS
Sbjct: 694 DS 695


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 1   MDSLIYSVQRKSTKTVKLAANNQSNGPL 28
           ++  I SVQRK  + VK A ++  N PL
Sbjct: 854 IEERIVSVQRKKRQLVKEALDSNENNPL 881


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 46  PFTCQRNDKNNKYLLETPTI 65
           P T  +++K N Y L TPTI
Sbjct: 376 PETVVKDEKGNNYYLSTPTI 395


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 80  KKPKLYEPKNSRDENDPNISEAGEMVKLVASNDCK 114
           ++P      NS +ENDP +    E  K  A  D K
Sbjct: 217 RRPSPSAEHNSAEENDPELQRVIEESKRQAEEDAK 251


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.127    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,688
Number of Sequences: 5004
Number of extensions: 48046
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 4
length of query: 269
length of database: 2,362,478
effective HSP length: 72
effective length of query: 197
effective length of database: 2,002,190
effective search space: 394431430
effective search space used: 394431430
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)