Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001617-TA|BGIBMGA001617-PA|undefined
         (269 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55820.1 68418.m06956 expressed protein                             34   0.12 
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    33   0.20 
At5g05500.1 68418.m00596 pollen Ole e 1 allergen and extensin fa...    30   1.4  
At5g18400.2 68418.m02165 expressed protein contains Pfam profile...    29   3.3  
At5g18400.1 68418.m02164 expressed protein contains Pfam profile...    29   3.3  
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea...    29   3.3  
At3g63280.1 68416.m07111 protein kinase family protein contains ...    29   4.3  

>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 11/200 (5%)

Query: 3   SLIYSVQRKSTKTVKLAANNQSNGPLLGA---SGLLQKSTKTLLVHPFT-CQRNDKNNKY 58
           SLI        K +   +N++S    L     + LL+   + + V  F     N +    
Sbjct: 746 SLIEEESANDYKALSDGSNHKSADKQLEVREGNSLLRTPDRPVFVDNFDEVPENSREKSS 805

Query: 59  LLETPTIKRKAPLLEIPK--DFGKKPKLYEPKNS-RDENDPNISEAGEMVKLVASNDCKS 115
           + + PT    A + ++P   D G         N   D N  NI    EM    +    K 
Sbjct: 806 MEKVPTPAPTARVFDVPSLTDSGVNLSANNEMNDIEDHNGLNIEMVAEMESYASHPGLKV 865

Query: 116 TVNXXXXXXXXXXXXXXKTTQ---QTCSKADIVVNKRQSAMPSCD-CSNKQSDVPECACQ 171
             N               T +   +T S+  +   KR       D C + +S + E  C 
Sbjct: 866 GENEPTESNTFTGHIDALTKRPQHETSSEKAVPPIKRDVTCTEADECHDLESPIQEFFCS 925

Query: 172 SKSIENGVRDNVTERKIEKP 191
           S  +   +R N   R +EKP
Sbjct: 926 SSPMGGSMRQNKRRRILEKP 945


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 133 KTTQQTCSKADIVVNKRQSAMPSCDCSNKQSDVPECACQSKSIENGVRDNVTERKIEKPK 192
           KT  +T  K D+ +   +          KQ  VPE + Q    E   R+ V + +  KP+
Sbjct: 70  KTNPETKLKPDLEIQPEEKKEKVLAEETKQKVVPEESKQEVPPEESKREVVVQPESAKPE 129

Query: 193 CPCESVGD--QPKCSSKVKCDCQSQPVK 218
              ES  +  +P+ +S+ K + +++P K
Sbjct: 130 TKSESKPETTKPETTSETKPETKAEPQK 157


>At5g05500.1 68418.m00596 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 183

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 219 VIFAPAMMPSIYGPVPGIPYLIKPSVKVADSSVESRAFNQS 259
           ++ A A++ + Y P P  P    P+VK  +++VE   + QS
Sbjct: 13  ILIATAVLANAYTPPPPPPTTAYPAVKTVEAAVEGMVYCQS 53


>At5g18400.2 68418.m02165 expressed protein contains Pfam profile
           PF05093: Protein of unknown function (DUF689)
          Length = 272

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 158 CSNKQSDVPECACQSKSIEN-GVRDNVTERKIEKPKCPCES--VGDQPKCSS 206
           C   +     C C    IE   V+  +TE +IE P+  C S  +GD  +C +
Sbjct: 195 CETTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLGDAFRCGT 246


>At5g18400.1 68418.m02164 expressed protein contains Pfam profile
           PF05093: Protein of unknown function (DUF689)
          Length = 269

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 158 CSNKQSDVPECACQSKSIEN-GVRDNVTERKIEKPKCPCES--VGDQPKCSS 206
           C   +     C C    IE   V+  +TE +IE P+  C S  +GD  +C +
Sbjct: 192 CETTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLGDAFRCGT 243


>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
           family protein Similar to U4/U6 small nuclear
           ribonucleoprotein hPrp4  (gi:2708305)[Homo sapiens];
           contains 4  WD-40 repeats
          Length = 276

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 63  PTIKRKAPLLEIPKDFGKKPKLYEPKNSRDENDPNISEAGEMVKLVASNDCKSTV 117
           PT  R+A + EI KDF K+  L   + +R  NDP+  +  E  KL A   CK  V
Sbjct: 3   PTELREARI-EITKDFIKRAALRIQRENRRRNDPDEDKNAE-TKL-ALKHCKDMV 54


>At3g63280.1 68416.m07111 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 555

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 160 NKQSDVPECACQSKSIENGVRDNVTERKIEKPKCPCESVGDQPKCSSKVKCDCQSQPVKV 219
           +K ++ PE   Q+++ E   R  V       P CP     +     +K KC  Q + V  
Sbjct: 429 DKIAEFPEDIFQNQNRETASRREVARHSFSSPPCPPHGEDNSNGSITKDKCTVQKRSVSE 488

Query: 220 I 220
           +
Sbjct: 489 V 489


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.127    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,048,486
Number of Sequences: 28952
Number of extensions: 245703
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 8
length of query: 269
length of database: 12,070,560
effective HSP length: 80
effective length of query: 189
effective length of database: 9,754,400
effective search space: 1843581600
effective search space used: 1843581600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)