GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001617-TA|BGIBMGA001617-PA|undefined
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0250 - 19907517-19908429,19910000-19910268                       30   2.3  
01_05_0194 - 19107143-19108055,19110864-19111132                       30   2.3  
09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379           28   6.9  
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524...    28   9.1  

>01_05_0250 - 19907517-19908429,19910000-19910268
          Length = 393

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 17  KLAANNQSNGPLLGASGLLQKSTKTLLVHPFTCQRNDKNNK 57
           +LAAN ++ G  L AS  L +  +T+L   F C    KNNK
Sbjct: 69  RLAANAEAAGIPLAASTFLCQRCETVLQPGFNCTIRIKNNK 109


>01_05_0194 - 19107143-19108055,19110864-19111132
          Length = 393

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 17  KLAANNQSNGPLLGASGLLQKSTKTLLVHPFTCQRNDKNNK 57
           +LAAN ++ G  L AS  L +  +T+L   F C    KNNK
Sbjct: 69  RLAANAEAAGIPLAASTFLCQRCETVLQPGFNCTIRIKNNK 109


>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
          Length = 377

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 61  ETPTIKRKAPLLEIPKDFGKKPKLYEPKNSRDEND 95
           E   +   A  LE+  DF K+  L  P N R E D
Sbjct: 155 EAQPLNHSALPLEVAHDFAKQDNLKPPNNQRQEQD 189


>01_06_0247 +
           27851206-27851255,27851382-27851496,27852280-27852468,
           27853698-27854057,27854138-27854201,27854365-27854504,
           27854610-27854918,27855135-27855389
          Length = 493

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 148 KRQSAMPSCDCSNKQSDVPECACQSKSIENGVRDNVTERKIEKPKC-PCESVGD---QPK 203
           KR+ +  SCD  +   D  E +C++  + +    N   R   +  C  C  + D     +
Sbjct: 50  KRKWSQVSCDFYHVSRDTREVSCETYQVPDNF--NHVSRDTHEVSCDTCHVLDDFYHVSR 107

Query: 204 CSSKVKCD-CQSQPVKVIFAPA 224
            + +V CD CQS   K +  P+
Sbjct: 108 DTREVSCDTCQSGSTKDVAGPS 129


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.127    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,632
Number of Sequences: 37544
Number of extensions: 276935
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 4
length of query: 269
length of database: 14,793,348
effective HSP length: 81
effective length of query: 188
effective length of database: 11,752,284
effective search space: 2209429392
effective search space used: 2209429392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)