GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001617-TA|BGIBMGA001617-PA|undefined
         (269 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_18231| Best HMM Match : HSP9_HSP12 (HMM E-Value=2.4)                30   2.3  
SB_40335| Best HMM Match : EGF (HMM E-Value=2.5e-09)                   30   2.3  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_35674| Best HMM Match : SH2 (HMM E-Value=0)                         29   4.0  
SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 143 DIVVNKRQSAMPSCDCSNKQSDVPECACQ--SKSIENGVRDNVTERKIEKPKCPCESVGD 200
           D V N    ++P   C++    +P+  C   SKS  + V    +E     P   C+++ +
Sbjct: 172 DAVCNDTSKSIPDAVCNDTSKSIPDAVCDDTSKSTPDAVCYETSE---SIPDPVCDNLDE 228

Query: 201 QPKCSS 206
            PK S+
Sbjct: 229 SPKIST 234



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 143 DIVVNKRQSAMPSCDCSNKQSDVPECACQ--SKSIENGVRDNVTERKIEKPKC 193
           D V N    ++P   C++    +P+  C   SKSI + V  N T + I    C
Sbjct: 148 DAVCNDTSKSIPDAVCNDTSESIPDAVCNDTSKSIPDAV-CNDTSKSIPDAVC 199


>SB_18231| Best HMM Match : HSP9_HSP12 (HMM E-Value=2.4)
          Length = 115

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 143 DIVVNKRQSAMPSCDCSNKQSDVPECACQ--SKSIENGVRDNVTE 185
           D V N     +P   C++    +P+  C   SKSI + V DN+ E
Sbjct: 29  DAVCNDTSKPIPDGVCNDTSKSIPDAVCDDTSKSIPDPVCDNLDE 73


>SB_40335| Best HMM Match : EGF (HMM E-Value=2.5e-09)
          Length = 309

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 145 VVNKRQSAMPSCDCSNKQSDVPECACQSKSIENGVRDNVTERKIEKPKCPCESVGDQPKC 204
           VV+K         C+N +   P  AC++    NG      +   E  KC C S      C
Sbjct: 128 VVSKDTGNPQQTRCANGRELSPSSACKNNPCHNGA--TCHQENDESYKCACASGFTGKHC 185

Query: 205 SSKVKCDCQS 214
              +  +C S
Sbjct: 186 ERVLSAECSS 195


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 151  SAMPSCDCSNKQS-DVPECACQSKSIEN 177
            SA  SC C +++S DVPEC     S E+
Sbjct: 1016 SAFLSCSCQSEESEDVPECGANESSTES 1043


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 141  KADIVVNKRQSAMPSCDCSNKQSDVPECACQSKSIENGVRDNVTERKIEKPKCPCESVGD 200
            K +    K QS    C+   ++ +  +  C+S+      +D   E KIE+ K   +    
Sbjct: 1548 KGESEKEKCQSEKEKCESEKEKCESEKEKCESEKKVEESKDENPEEKIEEKK---DDTAS 1604

Query: 201  QPKCSSKVKCDCQSQPVKVIFAPAMMPSIYG 231
            + K SS+ K +   +  KV  +P  +    G
Sbjct: 1605 EKKESSEEKMEVDGEEQKVEKSPESVDKTEG 1635


>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
          Length = 871

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 141 KADIVVNKRQSAMPSCDCSNKQSDVPECACQSKSIENGVRDNVTERKIEKPKCPCESVGD 200
           K +    K QS    C+   ++ +  +  C+S+      +D   E KIE+ K   +    
Sbjct: 127 KGESEKEKCQSEKEKCESEKEKCESEKEKCESEKKVEESKDENPEEKIEEKK---DDTAS 183

Query: 201 QPKCSSKVKCDCQSQPVKVIFAPAMMPSIYG 231
           + K SS+ K +   +  KV  +P  +    G
Sbjct: 184 EKKESSEEKMEVDGEEQKVEKSPESVDKTEG 214


>SB_24844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 136 QQTCSKADIVVNKRQSAMPSCDCSNKQSD-VPECACQSKSIENGVRDNVTERKIEKPKCP 194
           QQ C       NK  +          + D V +  C +K+  N    NVT+R+    + P
Sbjct: 9   QQKCHAKTTCNNKNATQRQRATTQMPRKDNVKQHKCHAKTTCNNT--NVTQRQRATTQIP 66

Query: 195 CESVGDQPKCSSKVKCD 211
            +    Q KC +K  C+
Sbjct: 67  RKDNVQQHKCHAKTTCN 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.127    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,072
Number of Sequences: 59808
Number of extensions: 371099
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 11
length of query: 269
length of database: 16,821,457
effective HSP length: 81
effective length of query: 188
effective length of database: 11,977,009
effective search space: 2251677692
effective search space used: 2251677692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)