Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001616-TA|BGIBMGA001616-PA|IPR006073|GTP1/OBG,
IPR002917|GTP-binding protein, HSR1-related, IPR005289|GTP-binding
         (516 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 175 YAGMMFPPSLYEYIVKDQHKNMIVVMNKIDLVP 207
           + GM+    L E +VK+  K  + +MN+   VP
Sbjct: 678 WKGMLSEKILAEPLVKEHFKKALELMNRAVSVP 710


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 52  RGGRDTNRYALKFYRETEDELKIKKEDALRALSPVPEKEMEINSLDYFP-VDLSFPRRPP 110
           RG  D ++  L+   +T D+LKIK       L  VPE      S D  P V LS P R P
Sbjct: 95  RGEIDVSQAELQSLLKTADQLKIK------GLCEVPE------SRDGPPSVSLSSPPREP 142

Query: 111 WDFNMTAAQLDAQEHRY 127
               +   +L     RY
Sbjct: 143 GTPRINFTKLKRHHPRY 159


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,963
Number of Sequences: 429
Number of extensions: 6622
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 516
length of database: 140,377
effective HSP length: 61
effective length of query: 455
effective length of database: 114,208
effective search space: 51964640
effective search space used: 51964640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)