GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001616-TA|BGIBMGA001616-PA|IPR006073|GTP1/OBG,
IPR002917|GTP-binding protein, HSR1-related, IPR005289|GTP-binding
         (516 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   5.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   6.7  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 194 KNMIVVMNKIDLVPAGVVAAWKEYFVEKYPGLRVVYFTSCP 234
           ++++ ++N    +P+ V   +  YF+  YP L   +  S P
Sbjct: 326 EHILSIVNTCSQIPSEVEDKYTTYFLNTYPHLFNFFEFSVP 366


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 423 RIEHPDNEDTWSPW 436
           R E P  E  W PW
Sbjct: 236 RCEEPTEEKPWRPW 249


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,734
Number of Sequences: 317
Number of extensions: 5118
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 516
length of database: 114,650
effective HSP length: 60
effective length of query: 456
effective length of database: 95,630
effective search space: 43607280
effective search space used: 43607280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)