Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001616-TA|BGIBMGA001616-PA|IPR006073|GTP1/OBG,
IPR002917|GTP-binding protein, HSR1-related, IPR005289|GTP-binding
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 107 5e-24
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 65 2e-11
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 55 3e-08
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 43 1e-04
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 34 0.041
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 33 0.13
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 32 0.17
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 29 1.2
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 29 1.6
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 2.7
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 28 2.7
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 28 2.7
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 28 2.7
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 4.7
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 4.7
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 27 4.7
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 6.3
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 27 6.3
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 27 8.3
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 27 8.3
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 8.3
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 107 bits (256), Expect = 5e-24
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 280 DLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHERYRNGT------LTVGCVGQ 333
DL ++E +E DE ++ + I E++ + +T G VG
Sbjct: 250 DLETYESTSSNEIPESLQADENDVHSSRIATLKVLEGIFEKFASTLPDGKTKMTFGLVGY 309
Query: 334 PNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSKVPRPIQIL 393
PNVGKSS +N+++G K VSVS TPG TKHFQT+ L+ +V L DCPGLVFPS ++
Sbjct: 310 PNVGKSSTINALVGSKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSFATTQADLV 369
Query: 394 M-GSYPIAQLREPYTAIRYLGERLNLPQL-------LRIEHPDNEDTWSP--WDICDGWA 443
+ G PI QLRE + ER+ L +RI+ + T P ++ +A
Sbjct: 370 LDGVLPIDQLREYTGPSALMAERIPKEVLETLYTIRIRIKPIEEGGTGVPSAQEVLFPFA 429
Query: 444 KKRSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGY 483
+ R ++ A D RAA LL+ ++G++ PP Y
Sbjct: 430 RSRGFMRAHHGTPDDSRAARILLKDYVNGKLLYVHPPPNY 469
Score = 79.0 bits (186), Expect = 1e-15
Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 103 LSFPRRPPWDFNMTAAQLDAQEHRYFKNYIDKLQASEQWKD--ISYFEMNLETWRQLWRV 160
L+ PRRP WD TA +LD E F N+ L + + ++ FE NLE WRQLWRV
Sbjct: 108 LTIPRRPHWDQTTTAVELDRMERESFLNWRRNLAQLQDVEGFIVTPFERNLEIWRQLWRV 167
Query: 161 LEMCDILLLIVDVRYAGMMFPPSLYEYI--VKDQHKNMIVVMNKIDLVPAGVVAAWKEYF 218
+E D+++ IVD R L +Y+ V KN ++V NK D++ W YF
Sbjct: 168 IERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSKKNFLLV-NKADMLTEEQRNYWSSYF 226
Query: 219 VE 220
E
Sbjct: 227 NE 228
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 65.3 bits (152), Expect = 2e-11
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 385
++VG +G PN GKSS++N++ +KV +V+ PG TK +Q V L ++ L DCPG+V PS
Sbjct: 311 ISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSS 370
Query: 386 VPRPIQILM-GSYPIAQLREPYTAIRYLGERLNLPQLLRIEHPDNEDTWSPWDICDGWAK 444
++L+ G + + P Y+ L+ ++ +E W+ D + AK
Sbjct: 371 NDSDAELLLKGVVRVENVSNPEA---YIPTVLSRCKVKHLERTYEISGWN--DSTEFLAK 425
Query: 445 --KRSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPG 482
K+ K D A +L + G+I ++ P G
Sbjct: 426 LAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGPKG 465
Score = 58.4 bits (135), Expect = 2e-09
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKD-QHKNMIVVMNKIDLVPAGVVA 212
W +L++V++ D+L+ ++D R ++ Y+ + HK+MI+V+NK+DLVP V A
Sbjct: 207 WNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLVPTSVAA 266
Query: 213 AWKEYFVEKYP 223
AW + ++YP
Sbjct: 267 AWVKILAKEYP 277
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 54.8 bits (126), Expect = 3e-08
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 310 KADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKV------VSVSRTPGHTKHF 363
K+ +Y A ++ ++ +LTVG +G PNVGKSS++N+++ R G T
Sbjct: 255 KSLKSYSAKKKLKS-SLTVGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSL 313
Query: 364 QTVYLTPQVRLCDCPGLVFPSKVPRP---IQILMGSYPIAQLREPYTAIRYLGERLN-LP 419
+ V L ++RL D PG+VFPS + +++ + ++ +P Y+ + L+ +P
Sbjct: 314 REVKLDNKLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSSTKVDDPVAVASYILQFLSRVP 373
Query: 420 QLL-----RIEHP---DNEDTWSPWDICDGWAKKRSYLTAKSARLDTYRAANSLLRMALD 471
L R E P + D + D A+KR L + + AAN ++
Sbjct: 374 GQLERMFQRYELPPLLNTSDIDTATDFLVNIARKRGRL-GRGGIPNLNAAANIVINDWHA 432
Query: 472 GRICLWLRPPGYTEK 486
GRI W P EK
Sbjct: 433 GRIEWWAEPEVINEK 447
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 155 RQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKD--QHKNMIVVMNKIDLVPAGVVA 212
++ +V+E D++L ++D R + ++ + K +I V+NKIDLVP+ V+
Sbjct: 154 KEFKKVVEASDVILYVLDARDPEGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLN 213
Query: 213 AWKEYFVEKYPGLRVVYFTSCPSYNLRGASS 243
W Y +P + + + + NL+ S+
Sbjct: 214 KWVTYLRNFFPTIPMRSASGSGNSNLKHQSA 244
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 42.7 bits (96), Expect = 1e-04
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 323 NGTLTVGCVGQPNVGKSSLMNSVMG---RKVVS--VSRTPGHTKHFQTV---YLTPQVRL 374
NG + V VG PN GKSS++NS+ RK S V PG TK + + V +
Sbjct: 143 NGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYM 202
Query: 375 CDCPGLVFPSKVPRPIQILMGSYPIAQLRE----PYTAIRYLGERLNLPQLLRIEHPDNE 430
D PG++ PS + +P +L S + ++E P T + YL LN RI+ P
Sbjct: 203 LDTPGIMTPS-ITKPEDMLKLSL-VGCVKEGIVHPVTVVDYLLFHLN-----RID-PSLY 254
Query: 431 DTWS-PWDICDGWAKKRSYLTAKSAR--LDTYRAANSLLRMALDGRI 474
WS P + D + + +Y K + D +N +++ GR+
Sbjct: 255 SKWSLPTNDVDEFLQNTAYKARKLTKGGFDENFVSNYVIQQYRIGRL 301
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 34.3 bits (75), Expect = 0.041
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMGRK--VVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
R G TVG +G P+VGKS+LM + G + + T T Y ++++ D PG
Sbjct: 60 RTGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPG 119
Query: 380 LVFPSK 385
++ +K
Sbjct: 120 IIEGAK 125
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.7 bits (71), Expect = 0.13
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 259 MCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAH 318
+C K++E + + +D S E ++ D I E+ E+ + I +
Sbjct: 177 ICFRWRKKLIEY-RAFLEASIDFSE-EHELDDIETIKLFEELNEMKDEIDAHIEGGK-CK 233
Query: 319 ERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 361
E R G + V +G N GKSSL+N + R++ VS G T+
Sbjct: 234 EVLRKG-INVAILGPSNAGKSSLINLLANRRISIVSPQSGTTR 275
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 32.3 bits (70), Expect = 0.17
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK-----HFQTVYLTPQVRLCDCPG 379
T T+ G PNVGKSS MN V R V V TK HF YL QV D PG
Sbjct: 168 TRTLLVCGYPNVGKSSFMNKVT-RAQVDVQPYAFTTKSLFVGHFDYKYLRWQV--IDTPG 224
Query: 380 LV 381
++
Sbjct: 225 IL 226
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 48 PSRGRGGRDTNRYALKFYRETEDELKIKKEDALRALSPVPE 88
P R R F ETE+ELK+KK D L L + E
Sbjct: 416 PLASISSRKVVRMKYSFEPETENELKLKKGDLLLVLKEIDE 456
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 264 ATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKE 302
AT I+E + V GE +L EK +TE D +ED+KE
Sbjct: 323 ATDIIERSMNYVFGESELE--EKNASTKTENDSNEDDKE 359
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 159 RVLEMCDILLLIVDVRYAGMMFPPSLYEYI--VKDQHKNMIVVMNKID 204
R +C+I +L++D+ + P E I ++DQ +V +NK+D
Sbjct: 568 RGTSLCNIAILVIDIMHG---LEPQTIESIRLLRDQKTPFVVALNKVD 612
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 317 AHERYRNGTLTVGCVGQPNVGKSSLM 342
A R N T+ VG +G ++GK+SLM
Sbjct: 2 ADARKNNVTIKVGMIGDSSIGKTSLM 27
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTV--YLTPQVRLCDCPG 379
++G V +G P+VGKS+L++++ K + S V Y ++++ D PG
Sbjct: 59 KSGDARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPG 118
Query: 380 LV 381
++
Sbjct: 119 II 120
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRK 349
+G VG PN GKS+L+N + K
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASK 260
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 27.5 bits (58), Expect = 4.7
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 182 PSLYEYIVKDQHKNMIVVMNKIDLVPAGVVAAWKEYF 218
P Y + D H ++ ++ + AG++ AW + +
Sbjct: 115 PCFIAYKITDSHYLLVAIIQSTTAIQAGILTAWYQLY 151
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 374 LCDCPGLVFPSKVPRPIQILMGSYP 398
+ DC LV+PS +P+QI YP
Sbjct: 1834 IADCIELVYPSLSSKPVQISYDIYP 1858
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/66 (18%), Positives = 29/66 (43%)
Query: 121 DAQEHRYFKNYIDKLQASEQWKDISYFEMNLETWRQLWRVLEMCDILLLIVDVRYAGMMF 180
D E ++ ++ + L+ + +W I T WR+ + + + ++Y G++
Sbjct: 473 DISEDQFVESCLGVLEVNPEWSGIVKTWSKSHTLGLCWRMYDRLEWINSFSSLKYVGLLA 532
Query: 181 PPSLYE 186
LY+
Sbjct: 533 AKDLYQ 538
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 76 KEDALRALSPVPEKEMEINSLDYFPVDLSFPRRPPWDFNMTAAQLDAQEHRYFKNYIDKL 135
+ + + L + E +LD V S P P+ + +L+A EH ++ KL
Sbjct: 446 RRNLINLLPEITVAHFEAEALDLKFVAKSLPSNGPFSSFIYHVKLNAIEHILLSSFEQKL 505
Query: 136 QASEQW 141
QW
Sbjct: 506 HQPYQW 511
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 326 LTVGCVGQPNVGKSSL 341
L +G VG PN+GKS+L
Sbjct: 46 LKIGIVGMPNIGKSTL 61
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 143 DISYFEMNLETWRQLWRVLEMCDILLLIVDVRY 175
D+ +FE L +WR+ W V +L +V+ RY
Sbjct: 269 DLEHFE--LRSWRECWSVFYETLKILSLVETRY 299
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 137 ASEQWKDISYFEMNLETWRQLWRVLEMCD 165
AS + + EM + TWRQLW L + +
Sbjct: 16 ASAEMSHLFSREMRINTWRQLWLNLAIAE 44
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 294 IDFDEDEKEIGEAIIQKADTT 314
ID + +K++G+AI+QK D T
Sbjct: 336 IDLSKHDKKLGKAIVQKRDGT 356
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,696
Number of Sequences: 5004
Number of extensions: 100355
Number of successful extensions: 295
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 26
length of query: 516
length of database: 2,362,478
effective HSP length: 76
effective length of query: 440
effective length of database: 1,982,174
effective search space: 872156560
effective search space used: 872156560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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