Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001616-TA|BGIBMGA001616-PA|IPR006073|GTP1/OBG,
IPR002917|GTP-binding protein, HSR1-related, IPR005289|GTP-binding
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 165 1e-40
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 161 9e-40
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 69 1e-11
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 67 4e-11
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 50 6e-06
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 46 5e-05
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 42 9e-04
01_06_0603 + 30530486-30530984,30531174-30531202,30531484-305316... 39 0.008
03_02_0267 + 6990674-6990890,6991692-6991761,6991824-6991913,699... 36 0.059
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 36 0.10
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 35 0.14
03_02_0315 - 7401708-7401860,7401962-7402123,7402211-7402279,740... 35 0.18
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 34 0.31
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 33 0.41
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 33 0.55
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 33 0.72
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 32 0.96
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 32 1.3
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 32 1.3
06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41... 32 1.3
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 31 2.2
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 31 2.9
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 30 3.9
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 30 5.1
01_06_1479 + 37657525-37657878,37658075-37658254,37658703-376588... 30 5.1
05_01_0450 + 3577928-3579526,3579695-3579832 29 6.7
03_02_0843 - 11690176-11690820,11690930-11690961,11691115-11691235 29 6.7
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 29 8.9
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 29 8.9
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 8.9
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 165 bits (400), Expect = 1e-40
Identities = 126/398 (31%), Positives = 202/398 (50%), Gaps = 36/398 (9%)
Query: 103 LSFPRRPPWDFNMTAAQLDAQEHRYFKNYIDKLQASEQWKDI--SYFEMNLETWRQLWRV 160
L PRRPPW MT +LDA E R F + L E+ + + + FE N++ WRQLWRV
Sbjct: 127 LKVPRRPPWTPQMTVEELDANEKRAFLEWRRNLARLEENEKLVLTPFEKNIDIWRQLWRV 186
Query: 161 LEMCDILLLIVDVRYAGMMFPPSLYEYIVK-DQHKNMIVVMNKIDLVPAGVVAAWKEYFV 219
LE D+L+++VD R P L Y + D+HK ++++NK DL+P V W EYF
Sbjct: 187 LERSDLLVMVVDARDPLFYRCPDLEVYAQEIDEHKRTLLLVNKADLLPLNVRQRWAEYFK 246
Query: 220 EKYPGLRVVYFTSCPSYNLRGASSDKAGLQVRRRKGRQRMCSEGATKILEACKDIVNGEV 279
+ ++Y ++ + A++D G ++ ++ TKI +D
Sbjct: 247 QH----DILYL----FWSAKAATADLEGKKLSSYSMENWNTADLDTKIYG--RD------ 290
Query: 280 DLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHERYRNGTLTVGCVGQPNVGKS 339
E +R + E ++ ++K A + +++ R + VG VG PNVGKS
Sbjct: 291 -----ELLVRLQGEAEYIVNQKGALRA-EEGHESSRSDSVSTRPKHVVVGFVGYPNVGKS 344
Query: 340 SLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS-KVPRPIQILMGSYP 398
S +N+++G+K V+ TPG TKHFQT+ ++ ++ LCDCPGLVFPS R + G P
Sbjct: 345 STINALVGQKRTGVTSTPGKTKHFQTLVISEELILCDCPGLVFPSFSSSRHEMVACGVLP 404
Query: 399 IAQLREPYTAIRYLGERLN---LPQLLRIEHPD---NEDTWSP---WDICDGWAKKRSYL 449
I ++ + AI+ + R+ L Q+ +I P E P ++ + R ++
Sbjct: 405 IDRMTKHRGAIQVVANRVPRNVLEQIYKITLPKPKAYEQLSRPPTAAELLRAYCTSRGHV 464
Query: 450 TAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEKK 487
+ + D RAA +L+ LDG+I + PPG T+ +
Sbjct: 465 -SHAGLPDETRAARQILKDYLDGKIPHFELPPGDTDSE 501
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 161 bits (392), Expect = 9e-40
Identities = 125/396 (31%), Positives = 201/396 (50%), Gaps = 36/396 (9%)
Query: 103 LSFPRRPPWDFNMTAAQLDAQEHRYF---KNYIDKLQASEQWKDISYFEMNLETWRQLWR 159
L PRRPPW+ MT +LD E R F + + +L+ +++ ++ FE N++ WRQLWR
Sbjct: 110 LRVPRRPPWNSRMTVEELDENERRAFLVWRRNLARLEENDKLV-LTPFEKNIDIWRQLWR 168
Query: 160 VLEMCDILLLIVDVRYAGMMFPPSLYEYIVK-DQHKNMIVVMNKIDLVPAGVVAAWKEYF 218
VLE D+L+++VD R P L Y + D+HK ++++NK DL+P + W +YF
Sbjct: 169 VLERSDLLVMVVDARDPLFYRCPDLEVYAKEIDEHKRTMILVNKADLLPMNIRKKWADYF 228
Query: 219 VEKYPGLRVVYFTSCPSYNLRGASSDKAGLQVRRRKGRQRMCSEGATKILEACKDIVNGE 278
K + V++++ + A++ G + + + TKI G
Sbjct: 229 --KAHDILYVFWSA------KAATATLEGKILSGYSEQDSASLDLDTKIY--------GR 272
Query: 279 VDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHERYRNGTLTVGCVGQPNVGK 338
+L KK+ +TE +F ++ AI + + T + VG VG PNVGK
Sbjct: 273 DELL---KKL--QTEAEFIVAQRRAA-AIKEDSRATSSDSVSSVAKHVVVGFVGYPNVGK 326
Query: 339 SSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS-KVPRPIQILMGSY 397
SS +N+++G K V+ TPG TKHFQT+ ++ ++ LCDCPGLVFPS R + G
Sbjct: 327 SSTINALVGEKKTGVTHTPGKTKHFQTLIISEELTLCDCPGLVFPSFSSSRHEMVSCGVL 386
Query: 398 PIAQLREPYTAIRYLGERLN---LPQLLRIEHPDNEDTWSPWDICDGWAKKRSYLTAKS- 453
PI ++ + AI+ + +R+ L Q+ +I P + S R+Y ++
Sbjct: 387 PIDRMTKHREAIQVVADRVPRSVLEQIYKITLPKPKPYESQSRPPTAAELLRAYCASRGH 446
Query: 454 ---ARL-DTYRAANSLLRMALDGRICLWLRPPGYTE 485
A L D RAA +L+ +DG+I + PPG +
Sbjct: 447 VSHAGLPDETRAARQILKDYIDGKIPHFELPPGMVD 482
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 68.5 bits (160), Expect = 1e-11
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 385
+TVG VG PNVGKSSL+NS+ +VV+V TPG T+ Q V L +V+L DCPG+V
Sbjct: 269 ITVGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKKVKLLDCPGVVMLKS 328
Query: 386 VPRPIQI-LMGSYPIAQLREPYTAIR 410
+ + L + ++ +P + ++
Sbjct: 329 SNSGVSVALRNCKRVEKMEDPISPVK 354
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVK-DQHKNMIVVMNKIDLVPAGVVA 212
+++L +V+E D++L ++D R + + + K D K +++++NKIDLVP V
Sbjct: 142 YKELVKVIEASDVILEVLDARDPLGTRCIDMEKMVRKADPSKRIVLLLNKIDLVPKESVE 201
Query: 213 AWKEYFVEKYP 223
W Y E+ P
Sbjct: 202 KWLTYLREEMP 212
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 66.9 bits (156), Expect = 4e-11
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 316 FAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLC 375
FA + ++VG VG PNVGKSS++N++ + V V+ PG TK +Q + LT ++ L
Sbjct: 307 FARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLTKRIFLI 366
Query: 376 DCPGLVFPSKVPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHPDNEDTWSP 435
DCPG+V+ + +L G + L + A ++GE L + ++ EH
Sbjct: 367 DCPGVVYQNNDSETDIVLKGVVRVTNLAD---ASEHIGEVL---RRVKKEHLKRAYKIED 420
Query: 436 WDICDGWAKKRSYLTAKSAR---LDTYRAANSLLRMALDGRICLWLRPP 481
W + + + S T K R D A +L G+I ++ PP
Sbjct: 421 WVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVPPP 469
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKD-QHKNMIVVMNKIDLVPAGVVA 212
W +L++V++ D+++ ++D R L +++ ++ +HK+++ ++NK DLVPA
Sbjct: 213 WGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCDLVPAWATK 272
Query: 213 AWKEYFVEKYPGL 225
W + YP L
Sbjct: 273 GWLRTLSKDYPTL 285
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 49.6 bits (113), Expect = 6e-06
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQV-RLC--DCPGLV 381
+L+VG VG PN GKSSL N+++G KV +VSR T H LT + ++C D PGL+
Sbjct: 148 SLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLM 207
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 46.4 bits (105), Expect = 5e-05
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 329 GCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLV 381
G VG PNVGKSSL+N ++ R++ + PG T+ + V + L D PG++
Sbjct: 404 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELLDSPGIL 456
Score = 32.7 bits (71), Expect = 0.72
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 152 ETWRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKDQHKNMIVVMNKIDLVPAGVV 211
+T ++L L++ D+++ + D R P + ++ ++ I+VMN+ D+V
Sbjct: 292 KTEKELKEQLKLMDVVIEVRDARIPLATSHPKMDAWL---GNRKRIIVMNREDMVSNEDR 348
Query: 212 AAWKEYFVEKYPGLRVVY 229
AW YF + G +VVY
Sbjct: 349 NAWASYFANQ--GTKVVY 364
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 42.3 bits (95), Expect = 9e-04
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 321 YRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKH-FQTVYLTP--QVRLCDC 377
+R+G + V +G+PNVGKS+L+N ++G+K+ V+ P T+H + P Q+ L D
Sbjct: 123 HRSGYVAV--LGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDT 180
Query: 378 PGLV 381
PG++
Sbjct: 181 PGVI 184
>01_06_0603 +
30530486-30530984,30531174-30531202,30531484-30531660,
30533662-30533745,30534059-30534277
Length = 335
Score = 39.1 bits (87), Expect = 0.008
Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSV-SRTPGHTK---HFQTVY 367
R+G VG+ NVGKSSL+NS++ RK +++ S+ PG T+ HF++++
Sbjct: 130 RDGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFKSLF 179
>03_02_0267 +
6990674-6990890,6991692-6991761,6991824-6991913,
6992635-6992797,6992910-6993137
Length = 255
Score = 36.3 bits (80), Expect = 0.059
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 331 VGQPNVGKSSLMNSVMGRKVVSV-SRTPGHTKHFQTVYLTPQVRLCDCPG 379
+G+ NVGKSSL+N+++ RK ++ S+ PG T+ + L D PG
Sbjct: 45 LGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPG 94
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 35.5 bits (78), Expect = 0.10
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 361
+ VG+PNVGKSS++N+++G VS G T+
Sbjct: 376 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTR 409
Score = 35.1 bits (77), Expect = 0.14
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 262 EGATKILEACKDIVNGEV-DLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHER 320
EG +EA ++ G V DLS +++ E ID D +K II+ D T +
Sbjct: 104 EGEEMDVEAMEEEALGAVADLS---ERLSRELRIDDDVRDKR---RIIR--DKTSASKHI 155
Query: 321 YRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 361
N V +G+PNVGKS+L N ++G V PG T+
Sbjct: 156 PDNLLPRVAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTR 196
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
++G VG VG P+VGKS+L+N + G +V + T +Y +++L D PG
Sbjct: 72 KSGDARVGLVGFPSVGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPG 131
Query: 380 LVFPSK 385
++ +K
Sbjct: 132 IIEGAK 137
>03_02_0315 -
7401708-7401860,7401962-7402123,7402211-7402279,
7403332-7403596,7404613-7404737,7404826-7404933,
7405102-7405249,7406013-7406065
Length = 360
Score = 34.7 bits (76), Expect = 0.18
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVS 354
TLT+ +G+ VGKSS +NS++G +V +VS
Sbjct: 71 TLTILVMGKGGVGKSSTVNSIVGERVATVS 100
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 33.9 bits (74), Expect = 0.31
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 328 VGCVGQPNVGKSSLMNSVMGR-KVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVF 382
+ G NVGKSSL+N++ + VV S PG T+ L ++ L D PG F
Sbjct: 397 IAFAGVSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFRLASKLCLVDLPGYGF 452
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 33.5 bits (73), Expect = 0.41
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVM-----------GRKVVSVSRTPGHTKHFQTVYLT--PQ 371
TL V VG PNVGKS+L+NS+ K +V PG T+ ++ P
Sbjct: 136 TLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISSQPS 195
Query: 372 VRLCDCPGLVFPS 384
+ + D PG++ PS
Sbjct: 196 IYVLDTPGVLVPS 208
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 33.1 bits (72), Expect = 0.55
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 325 TLTVGCVGQPNVGKSSLMNSV--MGR---------KVVSVSRTPGHTKHFQ--TVYLTPQ 371
T TV VG PNVGKS+++N++ +GR K VS PG TK V P
Sbjct: 135 TGTVLLVGIPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPN 194
Query: 372 VRLCDCPGLVFP 383
+ + D PG++ P
Sbjct: 195 IYVLDTPGVLSP 206
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 32.7 bits (71), Expect = 0.72
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 361
L + VG+PNVGKS+L+N+++ + V V G T+
Sbjct: 312 LQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTR 347
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 32.3 bits (70), Expect = 0.96
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 310 KADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLT 369
K+ Y +++ + + + +G+ VGKS+++NS+MG + ++ G T + + V
Sbjct: 4898 KSSQQYHDNQKDLSFSCNILVLGKIGVGKSTVINSIMGEEKNKINAFDGATTNVRLVSSV 4957
Query: 370 P---QVRLCDCPGL 380
+V + D PGL
Sbjct: 4958 VDGIKVNIIDTPGL 4971
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 159 RVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKDQHKNMIVVMNKID 204
R + +CDI +++VD+ + G+ ++KD++ IVV+NK+D
Sbjct: 522 RGMSLCDIAVVVVDIMH-GLEKQTVETLALLKDRNVRFIVVLNKVD 566
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 318 HERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 361
+++ L V +G+PNVGKSSL+N+ + V+ G T+
Sbjct: 298 YDKLLQSGLQVAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTR 341
>06_01_0043 -
412675-412798,412891-412997,413104-413197,413733-413820,
413902-413943,414117-414223,414812-414942
Length = 230
Score = 31.9 bits (69), Expect = 1.3
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 241 ASSDKAGLQVRRRKGRQRMCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDE 300
+S DK+ + R R+ + EG+ + EA IV E+D + + R + E D D+D+
Sbjct: 72 SSKDKSYAEERDRRKSTSLLLEGSRR--EAEDKIVPREIDADDSDVEPRSDDESDEDDDD 129
Query: 301 KEIGEAIIQKAD 312
+ EA++ + +
Sbjct: 130 DDDTEALMAELE 141
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 31.1 bits (67), Expect = 2.2
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 245 KAGLQVRRRKGRQRMCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIG 304
K V R +R+ E + +++ + V V + W+ +I +E ++D DE++K+
Sbjct: 344 KGAESVERINFEERITKEEKNEAMKSSNEEVVSLV--TGWKNRI-EEWDVDVDENDKDTR 400
Query: 305 EAIIQKADTTYFAHERYRNGTLTVGCV-GQPNVGKSSLMNSV 345
+ ++ E+Y + + C+ G + GK+ L++ +
Sbjct: 401 KLTPKRDPAKVDKAEKYTDLRSPICCILGHVDTGKTKLLDCI 442
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVS 354
+L G VG PNVGKS+L N+++ R + S S
Sbjct: 60 SLRAGIVGLPNVGKSTLFNAIV-RNLPSAS 88
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 30.3 bits (65), Expect = 3.9
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 257 QRMCSEGATKILEACKDIVNGEVDLSS-WEKKIRDETEIDFDEDEKEIGEAIIQKADTTY 315
Q+M + T+ LE K +N ++ + +RD TE + +E ++ +A+I++AD Y
Sbjct: 312 QKMLAHLRTRALEKYKTELNLTLESGKGFAAAVRDTTESNLNEFDQGCADAVIEQADWDY 371
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 29.9 bits (64), Expect = 5.1
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSR-----TPGHTKHFQ--TVYLTPQVRLCDCPGL 380
V +G N GKS+L+N+ ++ V ++R PG T T L + ++ D PGL
Sbjct: 410 VWVIGAQNAGKSTLINAFAKKQGVKITRLTEAAVPGTTLGILRITGVLPAKAKMYDTPGL 469
Query: 381 VFP 383
+ P
Sbjct: 470 LHP 472
>01_06_1479 +
37657525-37657878,37658075-37658254,37658703-37658831,
37658936-37659084,37659245-37659383,37659969-37660274
Length = 418
Score = 29.9 bits (64), Expect = 5.1
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 221 KYPGLRVVYFTSCPSYNLRGASSDKAGLQVRRRKGRQRMCSEGATKILEACKDIVNGEVD 280
K P C + + S L+ ++ S+ +T L+ +++ + VD
Sbjct: 155 KIPPFEFKVLEVCLEHACKDLESQTRSLEKEAYPALDKLGSKVSTLNLDHVRNLKSRMVD 214
Query: 281 LSSWEKKIRDETEIDFDED 299
LS +KIRDE E D+D
Sbjct: 215 LSGRVQKIRDELEHLLDDD 233
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 29.5 bits (63), Expect = 6.7
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 261 SEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDE-KEIGEAIIQKADTTYFAHE 319
+E ++L+A D + + ++K+++ +T+++ +DE KEI + +QK D T H
Sbjct: 507 AEELMRLLDANSDGSLSSDEFALFQKRVKLKTKLENKDDEYKEILKQKLQKVDDTGLIHV 566
Query: 320 RYRN 323
+N
Sbjct: 567 YRKN 570
>03_02_0843 - 11690176-11690820,11690930-11690961,11691115-11691235
Length = 265
Score = 29.5 bits (63), Expect = 6.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 110 PWDFNMTAAQLDAQEHRYFKNYIDKLQ--ASEQWKDISYFEMNL 151
P +FN+T + D RY+++YI +L+ + K I YF +L
Sbjct: 129 PGNFNITQGEHDTARIRYYRDYITELKKVIDDGAKVIGYFAWSL 172
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 29.1 bits (62), Expect = 8.9
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 328 VGCVGQPNVGKSSLMNSVM------GRKVVSVSRTPGHTKHFQTV--YLTPQVRLCDCPG 379
V VG NVGKS+L+N++ G ++ + PG T V L Q +L D PG
Sbjct: 236 VWAVGARNVGKSTLLNAIARCSGIEGGPTLTEAPVPGTTLDVIQVDGVLGSQAKLFDTPG 295
Query: 380 LV 381
L+
Sbjct: 296 LL 297
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQV 372
V +G+ GKSSL+NS++G + T G + ++ PQV
Sbjct: 646 VAIIGEVGCGKSSLLNSIIG----EIHVTSGSITSYGSIAYVPQV 686
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 29.1 bits (62), Expect = 8.9
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 278 EVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHERYRNGTLTVGCVGQPNVG 337
E+ + E+ DE E + D+ K T H + G C G G
Sbjct: 417 EIRSDAIEEVAIDENEFSAEIDQGAFSWKTDAKIPTLQDIHVKIHKGMKVAVC-GAVGSG 475
Query: 338 KSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQ 371
KSSL++ V+G + + G K F T PQ
Sbjct: 476 KSSLLSCVLG----EMPKVQGTVKVFGTKAYVPQ 505
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,065
Number of Sequences: 37544
Number of extensions: 642609
Number of successful extensions: 1587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 41
length of query: 516
length of database: 14,793,348
effective HSP length: 85
effective length of query: 431
effective length of database: 11,602,108
effective search space: 5000508548
effective search space used: 5000508548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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