Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001616-TA|BGIBMGA001616-PA|IPR006073|GTP1/OBG,
IPR002917|GTP-binding protein, HSR1-related, IPR005289|GTP-binding
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 7e-12
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 4e-11
SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 4e-09
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 57 4e-08
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 41 0.002
SB_28952| Best HMM Match : Dynamin_N (HMM E-Value=7.7e-09) 34 0.32
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 33 0.42
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 33 0.73
SB_52326| Best HMM Match : M (HMM E-Value=0.38) 32 0.97
SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08) 31 1.7
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_56819| Best HMM Match : COesterase (HMM E-Value=0) 30 3.9
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0) 30 3.9
SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1) 30 5.2
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_54719| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.045) 29 9.0
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 9.0
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 69.3 bits (162), Expect = 7e-12
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 385
++VG +G PNVGKSS++N++ +KV V+ G TK +Q + L ++ L DCPG+V+P+
Sbjct: 168 ISVGLIGYPNVGKSSIINTLKAKKVCKVAPIAGETKVWQYITLMRRIYLVDCPGVVYPTG 227
Query: 386 VPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHPDNEDTWSPWDICDGW--- 442
IL G + ++E I + ER+ L + WD C +
Sbjct: 228 DTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKTYRV------QAWDDCTDFLEQ 281
Query: 443 AKKRSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPP 481
+RS K D A +L G++ ++ PP
Sbjct: 282 VSRRSGKLLKGGEPDINTVAKMILNDFQRGKLPYFVAPP 320
Score = 36.3 bits (80), Expect = 0.059
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 187 YIVKDQ-HKNMIVVMNKIDLVPAGVVAAWKEYFVEKYPGL 225
+I K++ HK++I ++NK DLVP V W E++P L
Sbjct: 97 FIKKEKSHKHLIFILNKCDLVPTWVTQQWVSVLSEEHPTL 136
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 66.9 bits (156), Expect = 4e-11
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS 384
++TVG VG PNVGKSS++NS+ + +V TPG TK Q V L ++L D PG+V +
Sbjct: 455 SITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLLDSPGIVMDT 514
Query: 385 KVPRPIQILMGSYPIAQLREPYTAIRYLGERL--NLPQLLRIEHPDNE 430
IL I + +P+ +R E N ++ HP E
Sbjct: 515 GDSDAAIILRNCVKIENIEDPFPQLRQSSEDATNNSGKIQFYTHPPEE 562
Score = 44.0 bits (99), Expect = 3e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 160 VLEMCDILLLIVDVRYA-GMMFPPSLYEYIVKDQHKNMIVVMNKIDLVPAGVVAAWKEYF 218
V+E D++L ++D R G P I K +++++NKIDLVP + W +Y
Sbjct: 334 VVEAADVILEVLDARDPIGCRCPQVEQAVIAAGATKKLVLILNKIDLVPKDIAEKWLKYL 393
Query: 219 VEKYPGLRVVYFTSCPSYNL 238
++P + T NL
Sbjct: 394 RNEFPAVIFKASTQTQKQNL 413
>SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 60.1 bits (139), Expect = 4e-09
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 30/106 (28%)
Query: 391 QILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHP------DNEDT---WSPWDICDG 441
QIL G +PI+Q++EPYTA+ YL R L +L++ P DN++ WS WDIC+
Sbjct: 122 QILSGLFPISQVQEPYTAVGYLAARWPLVHMLKLVLPQDLQEDDNKEVDHKWSAWDICE- 180
Query: 442 WAKKRSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEKK 487
ANS+LR+A+DG++ ++ PPG+ +++
Sbjct: 181 --------------------ANSILRLAVDGKVPMYHYPPGFVQER 206
Score = 32.7 bits (71), Expect = 0.73
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 115 MTAAQLDAQEHRYFKNYIDKLQASEQWKDISYFEMNLE 152
M+ Q++ E + F+ Y++++ + ++SYFE NLE
Sbjct: 1 MSKEQVENNERKEFQKYLEEIYKHHKQSELSYFEHNLE 38
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 56.8 bits (131), Expect = 4e-08
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 327 TVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTV 366
T+G VG PNVGKSS +N+++ K V+VS TPG TKHFQ V
Sbjct: 162 TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYV 201
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 48.4 bits (110), Expect = 1e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLT---PQVRLCDCPGLVF 382
L V +G+PN GKS+L+N ++G K+V+V+ P T+ T Q+ L D PGLV
Sbjct: 40 LKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVT 99
Query: 383 PSKVPR 388
S+ R
Sbjct: 100 QSEGKR 105
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 41.1 bits (92), Expect = 0.002
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTK 361
V VG+PNVGKS+L+N ++GR+ V PG T+
Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTR 57
>SB_28952| Best HMM Match : Dynamin_N (HMM E-Value=7.7e-09)
Length = 323
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 332 GQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYL-TPQVRL 374
GQ N GKSS++N +G +VV P + + Y TP VRL
Sbjct: 131 GQTNCGKSSIINEFLGARVVPTKAQPCTARIVRMTYSETPYVRL 174
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 33.5 bits (73), Expect = 0.42
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
+ G +G VG P+VGKS+L+ ++ G +V + T T Y +++L D PG
Sbjct: 45 KTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG 104
Query: 380 LVFPSKV 386
++ +K+
Sbjct: 105 IIEGAKM 111
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 32.7 bits (71), Expect = 0.73
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 297 DEDEKEIGEAIIQKADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRT 356
D+ ++ A I + +T F E + + + VGQ N GKSSL+N ++G + +
Sbjct: 66 DDMNSDVINAFISEQETQKF--EEFVSKKAAILVVGQTNSGKSSLINELLGGTYLPTAEI 123
Query: 357 P 357
P
Sbjct: 124 P 124
>SB_52326| Best HMM Match : M (HMM E-Value=0.38)
Length = 237
Score = 32.3 bits (70), Expect = 0.97
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 262 EGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHE 319
EG ++LE KDI+N V+ + R + E+ E EI E I+QK+ + +
Sbjct: 153 EGQVRVLEKDKDILNSSVNHAETR---RHQLEMALQEQHDEIQEMILQKSRENFVGEQ 207
>SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)
Length = 340
Score = 31.5 bits (68), Expect = 1.7
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 325 TLTVGCVGQPNVGKSSLMNSVMGRKVVSVSR-----TPGHTKHFQTVYLTPQVRLCDCPG 379
T V VG+ VGKS L+N++MG VV + T +KH + + T +V + D PG
Sbjct: 60 TFKVIVVGRTGVGKSHLVNTLMGEYVVEEGQDLDPCTSTVSKHEKRIGRT-RVTVWDSPG 118
Query: 380 L 380
L
Sbjct: 119 L 119
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 37 NAYDVVSVNYQPSRGRGGRDTNRYALKFYRETEDELKIKKE----DALRALSPVPEKEM 91
N DV + N + SR G D N ++ KF + E+E+ +KKE + R P PE+++
Sbjct: 1824 NNNDVDTNNCELSRNVGKLDNNLFS-KFQQSKEEEVPVKKEVYKREVKREAPPQPEQDV 1881
>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 30.7 bits (66), Expect = 3.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 331 VGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSKVPRP 389
+G P G + L V+ K + PG + F V + L DC +VFP+K PRP
Sbjct: 129 LGNPGQGYTILTGDVVVSK--NPCFHPGDMRKFNAVDIPALYHLVDC--IVFPAKGPRP 183
>SB_56819| Best HMM Match : COesterase (HMM E-Value=0)
Length = 613
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 206 VPAGVVAAWKEYFVEKYPGLRVVYFTSCPSYNLRGASSDKAGLQVRRRKGRQRMCSEGAT 265
VP+ W + PG R VY P + AS + ++ +R+K R+R C
Sbjct: 72 VPSKPAKGWSGVRNARKPGARCVYGRVMPPMAAKPASPENQRMKEQRKK-RKRQCQRNRI 130
Query: 266 KILEACKDIVNGE 278
K + V G+
Sbjct: 131 KRIAEAGQKVEGK 143
>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 806
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 70 DELKIKKEDALRALSPVPEKEMEINSLDYFPV-----DLSFPRRPPWDFNMTAAQLDAQE 124
+ L K E + + K+ ++ SL P+ D + PPW FN+TA L QE
Sbjct: 119 NHLHTKLEHGVLQMRENATKDPQVTSLHARPIRRGKNDDTITYGPPWHFNLTAKSLQVQE 178
Query: 125 HRYFKNYIDKLQASEQWKD 143
F I L+ E+ K+
Sbjct: 179 D--FWEVISILKNKEENKN 195
>SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 346
Score = 29.9 bits (64), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 103 LSFPRRPPWDFNMTAAQLDAQEHRYF 128
L PRRP W+ +M+A +LD +E F
Sbjct: 100 LRIPRRPEWNKSMSAEELDLKERDSF 125
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 29.5 bits (63), Expect = 6.8
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 262 EGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTTYFAHE 319
E TK+ E K++ + D+ +K+++ ET+ DE KE+ E + +T HE
Sbjct: 1316 ETKTKVDETKKEVQETKKDVQETKKEVQ-ETKTKVDETNKEVQETKKEIQETKKDVHE 1372
>SB_54719| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.045)
Length = 782
Score = 29.1 bits (62), Expect = 9.0
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 220 EKYPGLRVVYFTSCPSYNLRGASSDKAGLQVRRRKGRQRMCSEGATK-ILEACKDIVNGE 278
E+ L + F+ + A+ K +V ++ + ++CSE +TK I E + I+ +
Sbjct: 406 EQNKNLNEIVFSCRKENTAQKATVAKLQKEVFLKESKIKVCSEESTKQISELKQQIMEKD 465
Query: 279 VDLSSWEKKI-RDETEIDFDEDEKEIGEAIIQKADTTYFAHERYR 322
V + K + DE + + E+ EA++ + + E+++
Sbjct: 466 VVIRDLRKAVSEDEINSRRHQQQCEVVEALVNRLEVVSELAEKFK 510
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.1 bits (62), Expect = 9.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 288 IRDETEIDFDEDEKEIGEAIIQKADTTYFAHERYRNG 324
+RD +DF + IG+A+ +K+ +Y H +++G
Sbjct: 64 LRDNKGLDFKDKVLSIGQAVRRKSSRSYSRHFHWQSG 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,028
Number of Sequences: 59808
Number of extensions: 722525
Number of successful extensions: 1607
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1591
Number of HSP's gapped (non-prelim): 26
length of query: 516
length of database: 16,821,457
effective HSP length: 85
effective length of query: 431
effective length of database: 11,737,777
effective search space: 5058981887
effective search space used: 5058981887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -