Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001616-TA|BGIBMGA001616-PA|IPR006073|GTP1/OBG,
IPR002917|GTP-binding protein, HSR1-related, IPR005289|GTP-binding
(516 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 97 3e-20
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 97 3e-20
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 90 4e-18
Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical p... 71 3e-12
AL021571-5|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 66 7e-11
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 66 7e-11
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 66 7e-11
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 37 0.030
Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.091
Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical p... 35 0.12
U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 33 0.64
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 33 0.64
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 32 1.1
U55374-7|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 32 1.1
U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 32 1.1
AL117202-31|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 32 1.1
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 31 1.5
Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical p... 29 5.9
Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical p... 29 5.9
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 29 7.9
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 29 7.9
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 97.1 bits (231), Expect = 3e-20
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS-KV 386
VG VG PNVGKSS +N + G K VSVS TPG T+HFQT+++ Q+ LCDCPGLV PS
Sbjct: 132 VGMVGYPNVGKSSTINKLAGGKKVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFSF 191
Query: 387 PRPIQILMGSYPIAQLREPYTAIRYLGERLN---LPQLLRIEHPDNEDTWSPWDICDGWA 443
R L G P+ Q+R+ + L R+ + I P+ + S ++ + A
Sbjct: 192 GRSEMFLNGILPVDQMRDHFGPTSLLLSRVPVHVIEATYSIMLPEMQSP-SAINLLNSLA 250
Query: 444 KKRSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEKK 487
R ++ A S D RAA + + + G++ PPG +++
Sbjct: 251 FMRGFM-ASSGIPDCSRAARLMFKDVVSGKLIWAAAPPGVEQEE 293
Score = 58.0 bits (134), Expect = 1e-08
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVK-DQHKNMIVVMNKIDLVPAGVVA 212
WR+LWRV+E DI++ IVD R + L +Y+ + D K +++++NK DL+ A
Sbjct: 2 WRELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQA 61
Query: 213 AWKEYFVEKYPGLRVVYFTS 232
+W+EYF EK ++V+++++
Sbjct: 62 SWREYF-EK-ENIKVIFWSA 79
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 97.1 bits (231), Expect = 3e-20
Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS-KV 386
VG VG PNVGKSS +N + G K VSVS TPG T+HFQT+++ Q+ LCDCPGLV PS
Sbjct: 301 VGMVGYPNVGKSSTINKLAGGKKVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFSF 360
Query: 387 PRPIQILMGSYPIAQLREPYTAIRYLGERLN---LPQLLRIEHPDNEDTWSPWDICDGWA 443
R L G P+ Q+R+ + L R+ + I P+ + S ++ + A
Sbjct: 361 GRSEMFLNGILPVDQMRDHFGPTSLLLSRVPVHVIEATYSIMLPEMQSP-SAINLLNSLA 419
Query: 444 KKRSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEKK 487
R ++ A S D RAA + + + G++ PPG +++
Sbjct: 420 FMRGFM-ASSGIPDCSRAARLMFKDVVSGKLIWAAAPPGVEQEE 462
Score = 68.5 bits (160), Expect = 1e-11
Identities = 41/134 (30%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 103 LSFPRRPP---WDFNMTAAQLDAQEHRYFKNYIDKLQASEQWKDISYFEMNLETWRQLWR 159
L PRRP W+ +L+ + +++ + +LQ + ++ FE N + WR+LWR
Sbjct: 118 LRIPRRPAKELWENMEDLTKLENEAFLQWRSDLSELQEVDGLV-LTPFERNPDMWRELWR 176
Query: 160 VLEMCDILLLIVDVRYAGMMFPPSLYEYIVK-DQHKNMIVVMNKIDLVPAGVVAAWKEYF 218
V+E DI++ IVD R + L +Y+ + D K +++++NK DL+ A+W+EYF
Sbjct: 177 VVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQASWREYF 236
Query: 219 VEKYPGLRVVYFTS 232
EK ++V+++++
Sbjct: 237 -EK-ENIKVIFWSA 248
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 89.8 bits (213), Expect = 4e-18
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 328 VGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPS-KV 386
VG VG PNVGKSS +N + G K VSVS TPG T+HFQT+++ Q+ LCDCPGLV PS
Sbjct: 132 VGMVGYPNVGKSSTINKLAGGKKVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFSF 191
Query: 387 PRPIQILMGSYPIAQLREPY 406
R L G P+ Q+R+ +
Sbjct: 192 GRSEMFLNGILPVDQMRDHF 211
Score = 58.0 bits (134), Expect = 1e-08
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVK-DQHKNMIVVMNKIDLVPAGVVA 212
WR+LWRV+E DI++ IVD R + L +Y+ + D K +++++NK DL+ A
Sbjct: 2 WRELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQA 61
Query: 213 AWKEYFVEKYPGLRVVYFTS 232
+W+EYF EK ++V+++++
Sbjct: 62 SWREYF-EK-ENIKVIFWSA 79
>Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 70.5 bits (165), Expect = 3e-12
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 298 EDEKEIGEAIIQKADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTP 357
E K +G I+ K Y ++ + ++ VG VG PNVGKSS++NS+ RK +V P
Sbjct: 233 ETSKCVGADIVMKILANYCRNKDIKT-SIRVGVVGFPNVGKSSVINSLKRRKACNVGNLP 291
Query: 358 GHTKHFQTVYLTPQVRLCDCPGLVFPS-KVPRPIQI-LMGSYPIAQLREPYTAIRYLGER 415
G TK Q V L +RL D PG++ S K PI++ L + + L +P + + R
Sbjct: 292 GITKEIQEVELDKNIRLIDSPGVILVSQKDLDPIEVALKNAIRVDNLLDPIAPVHAILRR 351
Query: 416 LNLPQLLRIEHPDNEDTWSPWDICDGWAKKRSYLTAKSARLDTYRAANSLLRMALDGRIC 475
+ ++ H + D S A++ L + AR D AA +L G++
Sbjct: 352 CSKETIML--HYNLADFNSVDQFLAQLARRIGKL-RRGARPDVNAAAKRVLNDWNTGKLR 408
Query: 476 LWLRPP 481
+ PP
Sbjct: 409 YYTHPP 414
Score = 40.3 bits (90), Expect = 0.003
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 159 RVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKDQHKNMIVVMNKIDLVPAGVVAAWKEYF 218
+ +E+ D+++ ++D R S+ + ++K K +++++NKIDLVP V W EY
Sbjct: 143 KTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGG-KRLVLLLNKIDLVPRENVQKWLEYL 201
Query: 219 VEKYP 223
++P
Sbjct: 202 RGQFP 206
>AL021571-5|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 65.7 bits (153), Expect = 7e-11
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 385
++VG +G PNVGKSSL+N++ +KV + G TK +Q V L ++ L D PG+V+P
Sbjct: 326 ISVGFIGYPNVGKSSLVNTLRKKKVCKTAPIAGETKVWQYVMLMRRIYLIDSPGVVYPQG 385
Query: 386 VPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHPDNEDTWSPWDICDGWAKK 445
IL G + +++P ++ + +R P+ LR ++ E T D A K
Sbjct: 386 DSETQIILKGVVRVENVKDPENHVQGVLDRCK-PEHLRRQYGIPEFT-DVDDFLTKIAIK 443
Query: 446 RSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEK 486
+ L K D + +L G++ ++ PPG E+
Sbjct: 444 QGRL-LKGGDPDIVAVSKVVLNEFQRGKLPYFVPPPGCEER 483
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKDQ-HKNMIVVMNKIDLVPAGVVA 212
W +L++V++ D+++ +VD R + E++ K++ HK+++ V+NK+DLVP V
Sbjct: 222 WGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTR 281
Query: 213 AW 214
W
Sbjct: 282 KW 283
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 65.7 bits (153), Expect = 7e-11
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 385
++VG +G PNVGKSSL+N++ +KV + G TK +Q V L ++ L D PG+V+P
Sbjct: 267 ISVGFIGYPNVGKSSLVNTLRKKKVCKTAPIAGETKVWQYVMLMRRIYLIDSPGVVYPQG 326
Query: 386 VPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHPDNEDTWSPWDICDGWAKK 445
IL G + +++P ++ + +R P+ LR ++ E T D A K
Sbjct: 327 DSETQIILKGVVRVENVKDPENHVQGVLDRCK-PEHLRRQYGIPEFT-DVDDFLTKIAIK 384
Query: 446 RSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEK 486
+ L K D + +L G++ ++ PPG E+
Sbjct: 385 QGRL-LKGGDPDIVAVSKVVLNEFQRGKLPYFVPPPGCEER 424
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKDQ-HKNMIVVMNKIDLVPAGVVA 212
W +L++V++ D+++ +VD R + E++ K++ HK+++ V+NK+DLVP V
Sbjct: 163 WGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTR 222
Query: 213 AW 214
W
Sbjct: 223 KW 224
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 65.7 bits (153), Expect = 7e-11
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPGLVFPSK 385
++VG +G PNVGKSSL+N++ +KV + G TK +Q V L ++ L D PG+V+P
Sbjct: 326 ISVGFIGYPNVGKSSLVNTLRKKKVCKTAPIAGETKVWQYVMLMRRIYLIDSPGVVYPQG 385
Query: 386 VPRPIQILMGSYPIAQLREPYTAIRYLGERLNLPQLLRIEHPDNEDTWSPWDICDGWAKK 445
IL G + +++P ++ + +R P+ LR ++ E T D A K
Sbjct: 386 DSETQIILKGVVRVENVKDPENHVQGVLDRCK-PEHLRRQYGIPEFT-DVDDFLTKIAIK 443
Query: 446 RSYLTAKSARLDTYRAANSLLRMALDGRICLWLRPPGYTEK 486
+ L K D + +L G++ ++ PPG E+
Sbjct: 444 QGRL-LKGGDPDIVAVSKVVLNEFQRGKLPYFVPPPGCEER 483
Score = 46.4 bits (105), Expect = 5e-05
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 154 WRQLWRVLEMCDILLLIVDVRYAGMMFPPSLYEYIVKDQ-HKNMIVVMNKIDLVPAGVVA 212
W +L++V++ D+++ +VD R + E++ K++ HK+++ V+NK+DLVP V
Sbjct: 222 WGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTR 281
Query: 213 AW 214
W
Sbjct: 282 KW 283
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 37.1 bits (82), Expect = 0.030
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 331 VGQPNVGKSSLMNSV------MGRKVVSVSRTPGHTKHFQT---VYLTPQVRLCDCPGLV 381
VG PNVGKSSL+N++ + RK V PG T Q + P V + D PG++
Sbjct: 121 VGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQNRVRILDKPPVYIIDTPGVL 180
Query: 382 FPS 384
P+
Sbjct: 181 SPN 183
>Z93385-2|CAB07637.1| 358|Caenorhabditis elegans Hypothetical
protein M01E5.2 protein.
Length = 358
Score = 35.5 bits (78), Expect = 0.091
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 327 TVGCVGQPNVGKSSLMNSVMGR--KVVSVSRTPGHTKHFQTVYLT--PQVRLCDCPGLVF 382
T G VG PN GKSSL+ ++ KV S T H H V+ Q+ + D PGL+
Sbjct: 190 TAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLH-PHIGVVFYEDFEQIAVADIPGLIE 248
Query: 383 PSKVPRPIQI 392
S + + + I
Sbjct: 249 DSHLNKGLGI 258
>Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical
protein F39B2.7 protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.12
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 290 DETEIDFDEDEKEIGEAI--IQKADTTYFAHERYRNGTLTVGCVGQPNVGKSSLMNSVMG 347
+ ++ E ++++ E + + + + ER + G L + G+PN GKSS++N +
Sbjct: 174 EHVNLELREAQQDVSEILHELNRMIKAWDGAERAQRG-LDIVLYGRPNSGKSSILNQLAH 232
Query: 348 RKVVSVSRTPGHTK 361
V VS PG T+
Sbjct: 233 DDVAIVSSIPGTTR 246
>U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 32.7 bits (71), Expect = 0.64
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 258 RMCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTT--Y 315
R E I+EA + N ++ +S K+ ETE DF+EDE E+ E + + T
Sbjct: 435 RTTEEEKAAIMEARRRAANKKLKQAS--KQQSTETEEDFEEDEDEMEEEYVDEGGTVEDE 492
Query: 316 FAHERYRNGTLTVG 329
FA + R +VG
Sbjct: 493 FAERKKRGCCHSVG 506
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 32.7 bits (71), Expect = 0.64
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 258 RMCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKADTT--Y 315
R E I+EA + N ++ +S K+ ETE DF+EDE E+ E + + T
Sbjct: 435 RTTEEEKAAIMEARRRAANKKLKQAS--KQQSTETEEDFEEDEDEMEEEYVDEGGTVEDE 492
Query: 316 FAHERYRNGTLTVG 329
FA + R +VG
Sbjct: 493 FAERKKRGCCHSVG 506
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
+ G +G VG P+VGKS+L+ ++ G +V + T T Y +++L D PG
Sbjct: 59 KTGDARIGFVGFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG 118
Query: 380 LVFPSK 385
++ +K
Sbjct: 119 IIEGAK 124
>U55374-7|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 31.9 bits (69), Expect = 1.1
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 258 RMCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKAD 312
R E I+EA + N ++ +S K+ ETE DF+EDE E+ E + +A+
Sbjct: 309 RTTEEEKAAIMEARRRAANKKLKQAS--KQQSTETEEDFEEDEDEMEEEYVDEAE 361
>U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 31.9 bits (69), Expect = 1.1
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 258 RMCSEGATKILEACKDIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEAIIQKAD 312
R E I+EA + N ++ +S K+ ETE DF+EDE E+ E + +A+
Sbjct: 309 RTTEEEKAAIMEARRRAANKKLKQAS--KQQSTETEEDFEEDEDEMEEEYVDEAE 361
>AL117202-31|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMG--RKVVSVSRTPGHTKHFQTVYLTPQVRLCDCPG 379
+ G +G VG P+VGKS+L+ ++ G +V + T T Y +++L D PG
Sbjct: 59 KTGDARIGFVGFPSVGKSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPG 118
Query: 380 LVFPSK 385
++ +K
Sbjct: 119 IIEGAK 124
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 31.5 bits (68), Expect = 1.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 252 RRKGRQRMCSEGATKILEACK-----DIVNGEVDLSSWEKKIRDETEIDFDEDEKEIGEA 306
R + +R G K L C D + E+D + +++ DE D DE++++ GE
Sbjct: 649 RMRQSKRSTPSGGLKHLSECSSDDEDDDDSSEIDWDAESEEVEDEESDDSDEEDEDDGER 708
Query: 307 IIQ 309
++Q
Sbjct: 709 LVQ 711
>Z47075-7|CAA87384.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSV-SRTPGHTKHFQTVYLTPQVRL--CDCPGLVF 382
L + +G PNVGKS L NS++ + +V S+ T++ + +L D PG V
Sbjct: 34 LQLAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNISASICSDSTQLVFVDSPGAVS 93
Query: 383 PSKVPRPIQILMGSYPIAQLREPYTAIR 410
S V + ++ + L++P A++
Sbjct: 94 TSHVRQTMKKTSATSGDRVLQDPERALQ 121
>Z36752-8|CAA85330.1| 394|Caenorhabditis elegans Hypothetical
protein E02H1.2 protein.
Length = 394
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 326 LTVGCVGQPNVGKSSLMNSVMGRKVVSV-SRTPGHTKHFQTVYLTPQVRL--CDCPGLVF 382
L + +G PNVGKS L NS++ + +V S+ T++ + +L D PG V
Sbjct: 34 LQLAVIGAPNVGKSLLTNSLIRCPLSAVSSKMDTTTRNISASICSDSTQLVFVDSPGAVS 93
Query: 383 PSKVPRPIQILMGSYPIAQLREPYTAIR 410
S V + ++ + L++P A++
Sbjct: 94 TSHVRQTMKKTSATSGDRVLQDPERALQ 121
>Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 105 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEQW---KDISYFEMNLETWRQLW 158
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 88 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 147
Query: 159 RVLEMCDILL 168
+ C ++L
Sbjct: 148 ELGSNCIVML 157
>Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 105 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEQW---KDISYFEMNLETWRQLW 158
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 145 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 204
Query: 159 RVLEMCDILL 168
+ C ++L
Sbjct: 205 ELGSNCIVML 214
>Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 105 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEQW---KDISYFEMNLETWRQLW 158
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 88 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 147
Query: 159 RVLEMCDILL 168
+ C ++L
Sbjct: 148 ELGSNCIVML 157
>Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 105 FPRRPPWDFN-MTAAQLDAQEHRYFKN--YIDKLQASEQW---KDISYFEMNLETWRQLW 158
+P P+D+N + ++D E+ ++ N Y++ + + + + MN E WR +W
Sbjct: 145 YPDTLPYDYNRVILPRIDGDENSHYINASYVNSWLRDKAYVVTQAVRTKPMNAEFWRMVW 204
Query: 159 RVLEMCDILL 168
+ C ++L
Sbjct: 205 ELGSNCIVML 214
>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical
protein F13D2.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQT 365
RNGT + NVG+ +L N+ VS+ PG TK+ QT
Sbjct: 410 RNGTKKITATSPDNVGQWALNNAYWWHGRVSL--YPGQTKYIQT 451
>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical
protein F13D2.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 322 RNGTLTVGCVGQPNVGKSSLMNSVMGRKVVSVSRTPGHTKHFQT 365
RNGT + NVG+ +L N+ VS+ PG TK+ QT
Sbjct: 410 RNGTKKITATSPDNVGQWALNNAYWWHGRVSL--YPGQTKYIQT 451
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 1960 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 1996
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 1751 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 1787
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 2058 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 2094
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 1960 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 1996
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 1751 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 1787
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 2058 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 2094
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 1769 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 1805
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 291 ETEIDFDEDEKEIGEAIIQKADT---TYFAHERYRNG 324
ET I+ D+D K +G +I+ ADT T HE Y +G
Sbjct: 1729 ETMIEIDKDGKGLGLSIVGGADTVLGTVVIHEVYSDG 1765
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,301
Number of Sequences: 27539
Number of extensions: 552848
Number of successful extensions: 1580
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1546
Number of HSP's gapped (non-prelim): 46
length of query: 516
length of database: 12,573,161
effective HSP length: 85
effective length of query: 431
effective length of database: 10,232,346
effective search space: 4410141126
effective search space used: 4410141126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -