GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001615-TA|BGIBMGA001615-PA|IPR007087|Zinc finger,
C2H2-type
         (143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    44   7e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    34   0.010
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    32   0.029
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.051
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.27 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   1.1  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   1.5  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      26   2.6  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    25   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.8  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    24   7.8  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    24   7.8  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 33  CDICGKSYKTEKRLKGHVWAMHTKRSTAKSFKCKL--CPATFTWQTSIYKHMKMMHD 87
           C ICG+ +KT   L+ HV    T     K++ C +  C  +FT  +++ KH+ ++H+
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHE 262



 Score = 32.7 bits (71), Expect = 0.022
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 6   FKTSKILVAHVNNIHGGKKKEEESERL-CDICGKSYKTEKRLKGHVWAMHTKRSTAKSFK 64
           FKT+  L  HV  +H    +E ++     + C KS+     LK H+  +H       +F 
Sbjct: 213 FKTAAHLRHHVV-LHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM---AFH 268

Query: 65  CKLCPATFTWQTSIYKHMKMMHDSKRNKQTRSQPVKKEDPYPGIELANRDHYFQQNINLM 124
           C  C   F ++  + +H++     K +K   ++   K D   G+ + ++    + + NL+
Sbjct: 269 CDSCGTKFGYKHMLQRHLERGTCKKAHKPYINECGIKHDGIEGVAIHDQKEK-ELSSNLV 327

Query: 125 QNIVQSV 131
            ++ + +
Sbjct: 328 SDVAKKI 334


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 897

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 36 CGKSYKTEKRLKGHVWAMHTKRSTAKSFKCKLCPATFTWQTSIYKHMKMMHDSKRNKQTR 95
          C KS+  ++ L+ H           K+F C  C   F     + +H++ MH  K+N   R
Sbjct: 33 CPKSFTRKEHLRRH----ERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSER 88


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 32  LCDICGKSYKTEKRLKGHVWAMHTKRSTAKSFKCKLCPATFTWQTSIYKHMKM 84
           +C  C K +K  + L+ H+ ++HT   + K F C +C   F+ + ++ +H ++
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHT---SEKPFVC-ICGKRFSRRDNLRQHERL 472



 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 61  KSFKCKLCPATFTWQTSIYKHMKMMHDSKR 90
           KSF C  C   F     + +H++ +H S++
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEK 450


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 781

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 33 CDI--CGKSYKTEKRLKGHVWAMHTKRSTAKSFKCKLCPATFTWQTSIYKHMKMMHDSKR 90
          CD   C KS+  ++  + H +  HT    +K+F C  C ++FT    + +H+   H  + 
Sbjct: 19 CDFQGCTKSFTRKEHARRH-FRSHTN---SKAFICPHCSSSFTRSDVLNRHVNQKHVKQN 74

Query: 91 NKQTRSQP 98
          +  +++ P
Sbjct: 75 DAGSQTHP 82


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 12  LVAHVNNI--HGGKKKEEESERLCDICGKSYKTEKRLKGHVWAMHTKRSTA-KSFKCKL- 67
           L++++N+I  H G ++ + +    D   K      R        H +  T  K F C + 
Sbjct: 55  LISNINSILDHIGNRRPKYTCEWDDCPRKGMVQTSRF---ALVAHLRSHTGEKPFICSVP 111

Query: 68  -CPATFTWQTSIYKHMKMMHDSKRNKQTRSQPVKKEDPYPGIELAN 112
            C  +FT   ++ KHM+ +H++   +   S P+ K  P     +AN
Sbjct: 112 ECDRSFTRSDALAKHMRTVHEADTLRP--SDPIPKAHPMHPQNVAN 155


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 13  VAHVNNIHGGKKKEEESERLCDIC--GKSYKTE---KRLKGHVWAMHTKRSTAKSFKCKL 67
           V++V  +   K++++E E++C IC  G +Y           HV A+   R+  K+ +C  
Sbjct: 61  VSNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRL-RALYKTKECTF 119

Query: 68  CPATFTWQTSIYKHMKMMHD 87
           C   +        H   +HD
Sbjct: 120 CKTEWDTVLITKDHEIDIHD 139


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 20  HGGKKKEEESERLCDICGKSYKTEKRLKGHVWAMHTKRSTAKS 62
           H G   E +  R C++C K YK    LK H    H + S A++
Sbjct: 389 HQGFVVENKPYR-CEVCSKRYKNLNGLKYHRTHSHLQVSMAQA 430


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 5   AFKTSKILVA--HVNNIHGGKKKEE-ESERLCDICGKSYKTEKRLKGHVW-AMHTKRSTA 60
           +FKT   L A  HVN I+G  +KEE +S  + + C   Y TE    G V+  +H   +  
Sbjct: 69  SFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSC--IYITENGNLGGVYRKVHLFDTER 126

Query: 61  KSFK 64
           K FK
Sbjct: 127 KHFK 130


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
          N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 63 FKCKLCPATFTWQTSIYKHMKMMHD 87
          F C  C +TFT    ++ H K  H+
Sbjct: 58 FCCLFCDSTFTCLKDLWSHCKEAHN 82


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 33  CDICGKSYKTEKRLKGHVWAMHTKRST 59
           C++C  SY  E+ L   +W +  K  T
Sbjct: 619 CELCMFSYFREEELLSVIWTLQEKLQT 645


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 64   KCKLCPATFTWQTSIYKHMKMMHDSKRNKQ 93
            KC + P  F+ + + Y+H K    +++N++
Sbjct: 1686 KCSIYPLAFSPRFTYYRHTKCHRRNEKNEK 1715


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 23  KKKEEESERLCDICGKSYKTEKRLKGHVWAMHTKRSTAKS 62
           +KK+++S +L +  G+S K EK+ K       +KR + +S
Sbjct: 452 EKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEES 491


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 24   KKEEESERLCDICGKSYKTEKRLKGHVWAMHTKRSTAKSFKCKLCPA--TFTWQTSIYKH 81
            K  +E +R C    + +KTE R    V    +KR +    + KL  A  T +   S    
Sbjct: 954  KSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEERVKLLGAGSTSSIPNSPRAS 1013

Query: 82   MKMMHDSKRNKQTRSQPVKKEDPYPGIELANRD 114
             ++  DS+  K   + P  K     GI    RD
Sbjct: 1014 KRVSLDSEDKKLVPASP-DKSAVQRGITALKRD 1045


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.130    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,652
Number of Sequences: 5004
Number of extensions: 27448
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 18
length of query: 143
length of database: 2,362,478
effective HSP length: 67
effective length of query: 76
effective length of database: 2,027,210
effective search space: 154067960
effective search space used: 154067960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)