Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001614-TA|BGIBMGA001614-PA|IPR007087|Zinc finger,
C2H2-type
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 54 3e-08
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 40 7e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 40 0.001
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 38 0.002
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 38 0.003
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 36 0.011
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 34 0.046
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 33 0.081
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 33 0.081
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 32 0.14
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 31 0.25
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.33
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 31 0.43
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 28 2.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 3.0
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 5.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 5.3
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 9.3
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 26 9.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 9.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 9.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 9.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 9.3
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 54.4 bits (125), Expect = 3e-08
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 PQCDCCGKVFASKMTLKYHLRVVPQNKEEKPKEKLYIPCKGCSKVFHSKKSYRAH-AVVH 378
P C CG+ F + L++H+ + EE ++ + P +GC K F + + H +V+H
Sbjct: 204 PSCSICGRQFKTAAHLRHHVVLHQTTLEE--RKTYHCPMEGCKKSFTRSSALKKHISVIH 261
Query: 379 SG-MTYPCPICGKLFQWKRNLARH 401
G M + C CG F +K L RH
Sbjct: 262 EGNMAFHCDSCGTKFGYKHMLQRH 285
Score = 43.6 bits (98), Expect = 6e-05
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 325 CGKVFASKMTLKYHLRVVPQNKEEKPKEKLYIPCKGCSKVFHSKKSYRAHAVVHSGM-TY 383
CGK ++ L+ HLR + E+P Y GCSK F+ K + H H+ + +
Sbjct: 30 CGKKYSRPSLLEQHLRT---HSNERPFVCDYT---GCSKAFYRKSHLKIHKRCHTNVKPF 83
Query: 384 PCPI--CGKLFQWKRNLARHTRNHRE-KDTGAVYECRECNKTFASRDCYANHLRLSKKHA 440
C C F +++L RH HR+ K +E C++ F+ +H+ H
Sbjct: 84 SCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWE--GCDECFSKHQQLRSHISACHTHL 141
Query: 441 PP 442
P
Sbjct: 142 LP 143
Score = 27.9 bits (59), Expect = 3.0
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 307 KLNYHKAAWHQEKPQCDC----CGKVFASKMTLKYHLRVVPQNKEEKPKEKLYIPCKGCS 362
+L H +A H C C FA+K L+ H+ N+ + P + C
Sbjct: 129 QLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHV-----NRAHEKIISYSCPHESCV 183
Query: 363 KVFHSKKSYRAHAVVHSGMTYPCPICGKLFQWKRNLARHTRNHREK-DTGAVYEC--REC 419
+K + + C ICG+ F+ +L H H+ + Y C C
Sbjct: 184 GHEGFEKWSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGC 243
Query: 420 NKTFASRDCYANHL 433
K+F H+
Sbjct: 244 KKSFTRSSALKKHI 257
Score = 27.5 bits (58), Expect = 4.0
Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 33/158 (20%)
Query: 220 CHMQESEMWVVRKNDVENEYFQS----LKYKC--SDCL--IGFNTARLMCDHMEGKHRPK 271
C Q+ E+ K ++N ++ + Y C C+ GF + +H+ H P
Sbjct: 146 CTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPS 205
Query: 272 GAGSHKCDVCNVYLLTKDNLLLHRSLHQI-----------------AYMTKSKLNYHKAA 314
C +C T +L H LHQ ++ S L H +
Sbjct: 206 ------CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISV 259
Query: 315 WHQEKP--QCDCCGKVFASKMTLKYHLRVVPQNKEEKP 350
H+ CD CG F K L+ HL K KP
Sbjct: 260 IHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKP 297
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 39.9 bits (89), Expect = 7e-04
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 347 EEKPKEKLYIPCKGCSKVFHSKKSYRAHAVVHSGMT-YPCPICGKLFQWKRNLARHTRNH 405
E K + GC+K F + ++H H+ + C IC K F + + RH + H
Sbjct: 563 ESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH 622
Query: 406 REKDTG-AVYECRECNKTFASRDCYANHLR 434
TG + C CN+ FA D H +
Sbjct: 623 ----TGIKAFACVTCNQRFARMDALNRHYK 648
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 368 KKSYRAHAVVHSGMTYPCPICGKLFQWKRNLARHTRNHREKDTGAVYECRECNKTFASRD 427
KK RAH + P C K F K +L RH R H + + C CN+ FA D
Sbjct: 13 KKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTH---ENVKAFSCSFCNRAFARSD 69
Query: 428 CYANHLR 434
H++
Sbjct: 70 VLNRHVQ 76
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 360 GCSKVFHSKKSYRAHAVVH-SGMTYPCPICGKLFQWKRNLARHTRNHREKDTGAVYECRE 418
GC+K K + +H H S Y C +C F +L RH R H + G Y C E
Sbjct: 449 GCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIH---ENGRPYVC-E 504
Query: 419 CNKTFASRDCYANH 432
C K F D H
Sbjct: 505 CLKRFNRLDALNRH 518
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 382 TYPCPICGKLFQWKRNLARHTRNHR-EKDTGAVYECRECNKTFASRDCYANHLRLSKKHA 440
+Y CP C ++F + + RH R+H EK Y C K F RD H+R + A
Sbjct: 3 SYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYP--SCKKRFTRRDELIRHVRTHLRKA 60
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 358 CKGCSKVFHSKKSYRAHAVVHSG-MTYPC--PICGKLFQWKRNLARHTRNHREK 408
C C +VFH ++ H H+G + C P C K F + L RH R H K
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRK 59
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 380 GMTYPCPICGKLFQWKRNLARHTRNHREKDTGAVYECRECNKTFASRDCYANHLRLSKKH 439
G ++ CP C K F+ +L RH R+ + V C C K F+ RD H RL
Sbjct: 420 GKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFV--C-ICGKRFSRRDNLRQHERLHVNA 476
Query: 440 AP 441
+P
Sbjct: 477 SP 478
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 33.9 bits (74), Expect = 0.046
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 327 KVFASKMTLKYHLRVVPQNKEEKPKEKLYIPCKGCSKVFHSKKSYRAH 374
+VFA K+ L + QN+E + K + Y C+ C+K F+S+ +Y +H
Sbjct: 46 EVFAGKI-----LSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSH 88
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 362 SKVFHSKKSYRAHAVVHSGMTYPCPICGKLFQWKRNLARHTRNHREKDTGAVYECRECNK 421
S+ H K + + + + P P+ ++F K + +K C CNK
Sbjct: 19 SQKIHWKSDWHHYNLKRKVASLP-PLSAEVFAGKILSIQKQNEEVQKKAEFYQNCEVCNK 77
Query: 422 TFASRDCYANHLRLSKKH 439
F S Y++H+ SKKH
Sbjct: 78 KFYSEGAYSSHM-ASKKH 94
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 33.1 bits (72), Expect = 0.081
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 353 KLYIPCKGCSKVFHSKKSYRAHAVVHS-GMTYPCPICGKLFQWKRNLARH-TRNHREK 408
K PC C+K F ++ H HS PCP C + K L RH R H +K
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 362 SKVFHSKKSYRAHAVVHSGMTYPCPICGKLFQWKRNLARHTRNHREKDTGAVYECRECNK 421
+ V +K+ +++ S +PC C K F NL RH H + + C C
Sbjct: 10 TNVLSAKRKLTEPSLIDSKRVFPCDQCAKRFTRHENLTRHKACHSKAEP---IPCPYCEI 66
Query: 422 TFASRDCYANHLR 434
+D H++
Sbjct: 67 KCKRKDLLKRHIQ 79
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 33.1 bits (72), Expect = 0.081
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 358 CKGCSKVFHSKKSYRAHAVVHSG-MTYPCPI--CGKLFQWKRNLARHTRNH 405
C C + F S + H H+G + C CGK F + N+ RH R H
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 242 SLKYKCSDCLIGFNTARLMCDHMEGKHRPKGAGSHKCDV--CNVYLLTKDNLLLHRSLH 298
+++Y+C++CL GF+ + H + G CD C + N+ H+ +H
Sbjct: 465 NVRYRCTECLQGFSRPSSLKIH---TYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 32.3 bits (70), Expect = 0.14
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 343 PQNKEEKPKEKLYIPCKGCSKVFHSKKSYRAHAVVHSG-MTYPC--PICGKLFQWKRNLA 399
P + P C C+K F+ + H H+G + C P C K F L
Sbjct: 13 PSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELT 72
Query: 400 RHTRNH 405
RH R H
Sbjct: 73 RHARIH 78
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 383 YPCPICGKLFQWKRNLARHTRNHR-EKDTGAVYECRECNKTFASRDCYANHLRL 435
Y CP+C K F + RH R H EK + C K F+ D H R+
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFP--GCAKRFSRSDELTRHARI 77
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.5 bits (68), Expect = 0.25
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 277 KCDVCNVYLLTKDNLLLHRSLHQIAYMTKSKLNYHKAAWHQEKPQCD 323
KC VCN+ L +D LL SL + TK+ AW E CD
Sbjct: 109 KCLVCNIILDIQDPLL-SLSLEAMKNATKASNKSQLTAWENELTTCD 154
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 31.1 bits (67), Expect = 0.33
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 369 KSYRAHAVVHSGMTYPCPI--CGKLFQWKRNLARHTRNHREKDTGAVYECRECNKTFASR 426
K+ ++ A + Y C C K F K + RH R+H + C C+ +F
Sbjct: 3 KAKKSRAYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSH---TNSKAFICPHCSSSFTRS 59
Query: 427 DCYANHLRLSKKH 439
D H +++KH
Sbjct: 60 DVLNRH--VNQKH 70
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 30.7 bits (66), Expect = 0.43
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 405 HREKDTGAVYECRECNKTFASRDCYANH 432
HR + GA + C +CN TF D Y NH
Sbjct: 19 HRSRCHGAYFTCIDCNTTFERTD-YRNH 45
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 383 YPCPICGKLFQWKRNLARHTRNHREKDTGAVYEC----RECNKTFASRDCYANHLRLSKK 438
Y C C + F +L RH R+H + E C + F+ RD H + +
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHR 129
Query: 439 HAPP 442
+ P
Sbjct: 130 NPQP 133
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 42 NIDVPDGLTVQVCWECFAAIRTVKRFQEQILKSYDILYDYSKKYMFLNSPKDLTKH 97
++D+P VC+ECF A K +L S ++ Y + +N +D +K+
Sbjct: 321 DVDLPQNFKA-VCFECFKAFFFKKSMIPSVLASLNVSVSYG---LMMNLVRDFSKN 372
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 385 CPICGKLFQWKRNLARHTRNHREKDTGAVYECRECNKTFASRDCYANHLR 434
CP G + + L H R+H + + EC+++F D A H+R
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKP-FICSVPECDRSFTRSDALAKHMR 128
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 356 IPCKGCSKVFHSKKSYRAHAVVHSGMTYPCPIC----GKLFQW 394
+ C C + FH + + +V + Y CP C GKL+ W
Sbjct: 1470 VQCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSKEGKLYPW 1512
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 349 KPKEKLYIPCKGCSKVFHSKKSYRAHAVVHSGMTYPCPIC 388
+P+ + I C+ C + +H+K + + + + CPIC
Sbjct: 1178 QPEAGMMIECELCHEWYHAKCMKMSKKKLRADEKFICPIC 1217
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 395 KRNLARHTRNHREKDTGAVYECR 417
KRN A H +HR D A Y R
Sbjct: 115 KRNAANHASHHRMPDESASYRTR 137
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 414 YECRECNKTFASRDCYANHLRLSK 437
Y C C+ F +C H RL+K
Sbjct: 19 YRCPRCDSRFCCLECNLEHKRLTK 42
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 350 PKEKLYIPCKGCSKVFHSKKSYRAHAVVHSGMTYPCPIC 388
P+ + I C+ C + +H+K + + + CPIC
Sbjct: 1104 PESGVMIECEICHEWYHAKCLKMSKKKLRQDEKFTCPIC 1142
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 346 KEEKPKEKLYIPCKGCSKVFHSKKSYRAHAVVHSGMTYPCPIC----GKLFQWK 395
+E P++ +I C C + FH + + S + CPIC G ++ W+
Sbjct: 1359 EEFSPRDS-FIDCTICERRFHYDCVGLNNEIADSVSKFTCPICMEQSGGIYPWQ 1411
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 89 NSPKDLTKHATSRLVMTPMELTTIQDNNSNLSNEVHVKIERENG 132
NS K L + RL EL T++ NSN NE+H E G
Sbjct: 489 NSDKALAE-TNIRLQEVTKELETLRMKNSNDLNEIHDLREENEG 531
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 274 GSHKCDVCNVYLLTKDNLLLH-RSLHQIAYM 303
G KC+ CN + D L H R H+ Y+
Sbjct: 243 GHPKCEFCNTHFYDDDELFKHCREKHERCYI 273
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 32 EVKECFKLLGNIDVPDGLTVQVC---WECFAAIRTVKRF 67
+ +EC L ID+P+G +++C EC + RT +F
Sbjct: 425 DFEECCHKLLKIDLPEGQEIELCNMVIECNSQERTYAKF 463
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,388
Number of Sequences: 5004
Number of extensions: 80711
Number of successful extensions: 268
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 45
length of query: 446
length of database: 2,362,478
effective HSP length: 75
effective length of query: 371
effective length of database: 1,987,178
effective search space: 737243038
effective search space used: 737243038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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