Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                     105   6e-23
SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)                   29   4.7  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score =  105 bits (252), Expect = 6e-23
 Identities = 53/99 (53%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 35  EHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPP--DPNNPLRAGALRSSGKRNP 92
           EHQH RYNPLK EW+LVSPHR  RPW GQ E A E + P  D NNPL     R+SGK NP
Sbjct: 530 EHQHRRYNPLKGEWILVSPHRMKRPWQGQKEKACEQEVPRWDQNNPLCPRTARASGKENP 589

Query: 93  DYTSTYVFPNDF-XXXXXXXXXXXXXXXXXFQSAPAKGT 130
           DY STYVF NDF                   +S PA+GT
Sbjct: 590 DYESTYVFENDFPALRPDVAVAHDYLTHPLLKSEPAQGT 628



 Score = 34.7 bits (76), Expect = 0.13
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 251 WAVWPYETMLLPLNGAPQRLTDLNPAQKKG 280
           WA WPYE +LLP     QR++DL+  ++ G
Sbjct: 629 WATWPYEVLLLPKRHV-QRISDLSSDEQMG 657


>SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)
          Length = 317

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 235 ERIVLKNSEWVAIVPYWAVWP-YETMLLPLNGAPQRL 270
           ++I ++NSE + IVP W   P Y  +L  L   P+ L
Sbjct: 216 QKIAMENSEGLLIVPMWPTQPWYSQLLHMLTDVPRML 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,970,913
Number of Sequences: 59808
Number of extensions: 516662
Number of successful extensions: 1062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 3
length of query: 378
length of database: 16,821,457
effective HSP length: 83
effective length of query: 295
effective length of database: 11,857,393
effective search space: 3497930935
effective search space used: 3497930935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)