Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
         (378 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089524-1|AAL90262.1|  350|Drosophila melanogaster HL01018p pro...   398   e-111
AE014134-1134|AAF52419.2|  350|Drosophila melanogaster CG9232-PA...   397   e-110
AY061109-1|AAL28657.1|  523|Drosophila melanogaster LD09558p pro...    32   1.1  
AE014297-748|AAF54234.1|  523|Drosophila melanogaster CG7331-PA ...    32   1.1  
BT023618-1|AAY85018.1|  126|Drosophila melanogaster IP05946p pro...    29   8.0  
AE014298-2543|AAF48712.2|  237|Drosophila melanogaster CG12997-P...    29   8.0  
AE014298-1305|AAF46465.1|  122|Drosophila melanogaster CG15369-P...    29   8.0  

>AY089524-1|AAL90262.1|  350|Drosophila melanogaster HL01018p
           protein.
          Length = 350

 Score =  398 bits (979), Expect = e-111
 Identities = 181/342 (52%), Positives = 222/342 (64%), Gaps = 3/342 (0%)

Query: 35  EHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPP--DPNNPLRAGALRSSGKRNP 92
           EH H R NPL  +WVLV PHR  RPWSGQ E A +++ P  DP NPL  G  R +G + P
Sbjct: 7   EHPHRRLNPLNGQWVLVCPHRTQRPWSGQQEKAQKNELPEFDPTNPLCPGVTRPNGIQTP 66

Query: 93  DYTSTYVFPNDFXXXXXXXXXXXXXXXXXFQSAPAKGTCRVMCFHPDSTMTIPLMKXXXX 152
           +Y STYVF NDF                 FQ APA+G CRVMCFHP S +T+P M     
Sbjct: 67  EYESTYVFENDFPALVEVVPVPPNNDDPLFQIAPARGNCRVMCFHPKSNLTLPTMSAAEI 126

Query: 153 XXXXXXWINQLNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQS 212
                 WI+Q NEL  +Y WVQIFENKGA MGCSNPHPHCQIW+ SFLP EP++K     
Sbjct: 127 VVVIDEWISQFNELSAKYAWVQIFENKGAAMGCSNPHPHCQIWSCSFLPTEPQLKQERLR 186

Query: 213 EYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVWPYETMLLPLNGAPQRLTD 272
            YYA     +L DY+++EL+ +ERIV++N +W+ +VP+WA WP+ETML+  N   +R+ D
Sbjct: 187 AYYATNERPMLADYVERELQRQERIVIENRDWLVVVPFWATWPFETMLISRNN-NKRIND 245

Query: 273 LNPAQKKGLAEIMKQLNTKYDNLFECSFPYSMGWHGAPTGPGTTRGDSXXXXXXXXXXXX 332
           L   Q+  LA  +K+L TKYDNLF+CSFPYSMGWHGAPTGP      S            
Sbjct: 246 LTAEQRYNLALTIKELTTKYDNLFQCSFPYSMGWHGAPTGPEHAHASSAHWTLHAIYYPT 305

Query: 333 XXRSATIKKFMVGFEMLAQTQRDLTPEQAAKRLRDCDHLIHY 374
             RSA+++KFMVGFE+LA  QRDLTPEQAA+RLR+ D   HY
Sbjct: 306 LLRSASVRKFMVGFELLAMAQRDLTPEQAAQRLREVDGKCHY 347


>AE014134-1134|AAF52419.2|  350|Drosophila melanogaster CG9232-PA
           protein.
          Length = 350

 Score =  397 bits (977), Expect = e-110
 Identities = 181/342 (52%), Positives = 222/342 (64%), Gaps = 3/342 (0%)

Query: 35  EHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPP--DPNNPLRAGALRSSGKRNP 92
           EH H R NPL  +WVLV PHR  RPWSGQ E A +++ P  DP NPL  G  R +G + P
Sbjct: 7   EHPHRRLNPLNGQWVLVCPHRTQRPWSGQQEKAQKNELPEFDPTNPLCPGVTRPNGIQTP 66

Query: 93  DYTSTYVFPNDFXXXXXXXXXXXXXXXXXFQSAPAKGTCRVMCFHPDSTMTIPLMKXXXX 152
           +Y STYVF NDF                 FQ APA+G CRVMCFHP S +T+P M     
Sbjct: 67  EYESTYVFENDFPALVEVVPVPPNNDDPLFQIAPARGNCRVMCFHPKSNLTLPTMSAAEI 126

Query: 153 XXXXXXWINQLNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQS 212
                 WI+Q NEL  +Y WVQIFENKGA MGCSNPHPHCQIW+ SFLP EP++K     
Sbjct: 127 VVVIDEWISQFNELSAKYAWVQIFENKGAAMGCSNPHPHCQIWSCSFLPTEPQLKQERLR 186

Query: 213 EYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVWPYETMLLPLNGAPQRLTD 272
            YYA     +L DY+++EL+ +ERIV++N +W+ +VP+WA WP+ETML+  N   +R+ D
Sbjct: 187 AYYATNERPMLADYVERELQRQERIVIENRDWLVVVPFWATWPFETMLISRNN-NKRIND 245

Query: 273 LNPAQKKGLAEIMKQLNTKYDNLFECSFPYSMGWHGAPTGPGTTRGDSXXXXXXXXXXXX 332
           L   Q+  LA  +K+L TKYDNLF+CSFPYSMGWHGAPTGP      S            
Sbjct: 246 LTAEQRYNLALTIKELTTKYDNLFQCSFPYSMGWHGAPTGPEHAHASSAHWTLHAIYYPP 305

Query: 333 XXRSATIKKFMVGFEMLAQTQRDLTPEQAAKRLRDCDHLIHY 374
             RSA+++KFMVGFE+LA  QRDLTPEQAA+RLR+ D   HY
Sbjct: 306 LLRSASVRKFMVGFELLAMAQRDLTPEQAAQRLREVDGKCHY 347


>AY061109-1|AAL28657.1|  523|Drosophila melanogaster LD09558p
           protein.
          Length = 523

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
           W +  + + P + D  +     K G S+L     Q L L   I LK +E   +V    VW
Sbjct: 49  WFNIAVQDHPEVLDETKRALNLKTGESIL-----QRLPLCVEISLKTTEGDQMV--LEVW 101

Query: 255 PYETMLLPLNGAPQRLTDLNP 275
             + +L P NGA     DLNP
Sbjct: 102 SLD-LLQPQNGASPATNDLNP 121


>AE014297-748|AAF54234.1|  523|Drosophila melanogaster CG7331-PA
           protein.
          Length = 523

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
           W +  + + P + D  +     K G S+L     Q L L   I LK +E   +V    VW
Sbjct: 49  WFNIAVQDHPEVLDETKRALNLKTGESIL-----QRLPLCVEISLKTTEGDQMV--LEVW 101

Query: 255 PYETMLLPLNGAPQRLTDLNP 275
             + +L P NGA     DLNP
Sbjct: 102 SLD-LLQPQNGASPATNDLNP 121


>BT023618-1|AAY85018.1|  126|Drosophila melanogaster IP05946p
           protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 173 VQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQSE 213
           V++ +N+GA   C        IW+ S+LPN  ++  RC +E
Sbjct: 82  VELIDNQGATKVCQ-----VDIWSQSWLPNGIQVTFRCPNE 117


>AE014298-2543|AAF48712.2|  237|Drosophila melanogaster CG12997-PA
          protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)

Query: 62 GQTEAAPEDQPPDP 75
          GQ E  PEDQPPDP
Sbjct: 40 GQAEDPPEDQPPDP 53


>AE014298-1305|AAF46465.1|  122|Drosophila melanogaster CG15369-PA
           protein.
          Length = 122

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 173 VQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQSE 213
           V++ +N+GA   C        IW+ S+LPN  ++  RC +E
Sbjct: 78  VELIDNQGATKVCQ-----VDIWSQSWLPNGIQVTFRCPNE 113


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,614
Number of Sequences: 52641
Number of extensions: 765296
Number of successful extensions: 1996
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1980
Number of HSP's gapped (non-prelim): 14
length of query: 378
length of database: 24,830,863
effective HSP length: 86
effective length of query: 292
effective length of database: 20,303,737
effective search space: 5928691204
effective search space used: 5928691204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)