GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
         (378 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   1.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           24   2.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   8.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   8.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 69  PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 107


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 59  PWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTST 97
           P    T  AP    P  + P  + A +SSG  +P   ST
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 285 MKQLNTKYDNLFECSFPYSMGWHGAPTGPGTTRGDS 320
           +KQ+N  +  L +   P S+    AP GP T RG S
Sbjct: 98  VKQVNNGFATLRQ-HIPASVAAAFAPQGPSTGRGAS 132


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 13/50 (26%), Positives = 20/50 (40%)

Query: 163 LNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQS 212
           +N    R   V+   N   +M   +PH   Q   S  +  EP  +D+  S
Sbjct: 6   MNSACMRGGSVRTLNNYQQVMEPRSPHTAWQFGVSQIVKREPMDEDKNDS 55


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
          protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 68 PEDQPPDPNNPLRAGALRSSGKRNPDYTS 96
          P+D P D +         S G++N +Y+S
Sbjct: 63 PQDSPYDASVAAACKLYSSEGQQNSNYSS 91


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,547
Number of Sequences: 317
Number of extensions: 3684
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 12
length of query: 378
length of database: 114,650
effective HSP length: 58
effective length of query: 320
effective length of database: 96,264
effective search space: 30804480
effective search space used: 30804480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)