GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...   268   7e-73
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    30   0.62 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.9  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.3  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   5.8  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   7.6  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score =  268 bits (658), Expect = 7e-73
 Identities = 150/362 (41%), Positives = 194/362 (53%), Gaps = 24/362 (6%)

Query: 35  EHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPP--DPNNPLRAGALRSSGKRNP 92
           E+ H RYNPL D +VL SPHR  RPW G  E   +D     DP   L  G +R++G  NP
Sbjct: 10  EYSHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNIRATGFENP 69

Query: 93  DYTSTYVFPNDFXXXX----------XXXXXXXXXXXXXFQSAPAKGTCRVMCFHPDSTM 142
            Y +TYVFPND+                           F++   KG C V+CF P+  +
Sbjct: 70  KYETTYVFPNDYPAVRVDQPDYMQDESEITKGNTLKTRMFKTEGVKGKCFVICFCPNHNL 129

Query: 143 TIPLMKXXXXXXXXXXWINQLNELGQ-------RYTWVQIFENKGAIMGCSNPHPHCQIW 195
           T+PLM           W +    L +       RY ++QIFENKG+ MGCSNPHPH Q W
Sbjct: 130 TLPLMSAEAICNVVETWKHLYVTLKKESLEGPIRYKYLQIFENKGSAMGCSNPHPHGQAW 189

Query: 196 ASSFLPNEPRIKDRCQSEYYAKYGNS-LLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
               +P+    ++ C    Y +  NS LL DY+K E+  KERIV++N  ++ +VPYWA+W
Sbjct: 190 CLDVIPSVVA-QEMCNMTKYFELNNSHLLGDYVKLEMLEKERIVVENDSFIVVVPYWALW 248

Query: 255 PYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNLFECSFPYSMGWHGAPTGPG 314
           P+ET+L+      + L +    QK  LA  +K L TKYDNLF  SFPYSMG H AP    
Sbjct: 249 PFETLLIAKEHL-KSLEEFEEKQKVDLASALKMLTTKYDNLFNTSFPYSMGLHQAPLYGS 307

Query: 315 TTRGDSXXXXXXXXXXXXXXRSATIKKFMVGFEMLAQTQRDLTPEQAAKRLRDCDHLIHY 374
               ++              RSAT+KKF VGFEML + QRDLT EQAA RL++ D   HY
Sbjct: 308 NEEVENSWFHMHFYPPLL--RSATVKKFCVGFEMLGEPQRDLTSEQAAARLQELDGQKHY 365

Query: 375 KN 376
           KN
Sbjct: 366 KN 367


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)

Query: 198 SFLPNEPR---IKDRCQSEYYAKYGNSLLVDYLKQEL-KLKERI 237
           SF  + P    IKDRC + Y AK  ++LLV ++++ L  +K R+
Sbjct: 291 SFFEHHPAYRTIKDRCGTPYLAKTLSNLLVSHIRERLPDIKARL 334


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 33  LHEHQHIRYNPLKD-EWVLVSPHRCLRPWSGQTEAAPEDQP 72
           L  H+ +R N L+  E +   PHR +    G +  +PED P
Sbjct: 258 LKRHRSLRLNELEHLESLARDPHRMVSLVDGMSNGSPEDSP 298


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 6   MMRIQCDVTPHAYSHYTSATCECIERELHEHQHIRYNPL 44
           + ++   VTPH+ ++  S  C+  + E  E   + +NP+
Sbjct: 213 LSKLHSHVTPHSLAYTQSVICKTYKVESIEEIFVNFNPI 251


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 6   MMRIQCDVTPHAYSHYTSATCECIERELHEHQHIRYNPLKDEWVL 50
           ++ I   ++ +A +  TS  C+ +   L      +Y+PLK ++VL
Sbjct: 297 LLEITTPISINAIAKSTSMVCDDVISTLESLSVFKYDPLKKKYVL 341


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 268 QRLTDLNPAQKKGLAEIMKQLNTKYDNLFECSFPYSMGWHGAPTGPGTTRGDS 320
           Q+ T LN A+K+ L+ ++K   TK+ +    S  YS      P G  TT   S
Sbjct: 313 QKCTVLN-AKKESLSSVLKSTKTKWYDFETFSNSYSSTIIDFPLGIFTTNASS 364


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,647
Number of Sequences: 5004
Number of extensions: 67849
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 6
length of query: 378
length of database: 2,362,478
effective HSP length: 74
effective length of query: 304
effective length of database: 1,992,182
effective search space: 605623328
effective search space used: 605623328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)