Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379... 54 2e-07
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 34 0.22
03_03_0256 + 15898702-15900420 31 1.5
03_06_0039 + 31235840-31236214,31237057-31237674 30 2.7
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 30 3.5
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 29 6.1
01_06_1034 + 33962813-33963802 29 6.1
03_06_0040 + 31240164-31241102,31241280-31241897 29 8.1
03_06_0037 + 31222963-31223886,31225172-31225786 29 8.1
>07_01_0510 -
3794793-3795047,3796005-3796295,3796850-3796906,
3797021-3797055,3797132-3797172,3798020-3798519
Length = 392
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 175 IFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLK 234
+F+N GA G S H H Q+ + F+P + C E + + G L ++ +++ ++
Sbjct: 212 VFKNHGASAGASMAHSHSQMLGTPFVPPSVTTRLNCMKEVFERLGKCSLCEFQSKDILVR 271
Query: 235 ERIVLKNSEWVAIVPYWAVWPYETMLLPLNGA-------PQRLTDLNPAQKKGLAEIMKQ 287
E + AIVP+ A +P+E ++P + DL + LA++ KQ
Sbjct: 272 E-----THNFSAIVPFAASYPFEIWIIPRQHSSYFHEIDKDTALDLGSLLRTMLAKLSKQ 326
Query: 288 LNTKYDNLFECSFPYSM 304
LN N S P+ +
Sbjct: 327 LNDPPFNFMIHSAPFGV 343
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 33.9 bits (74), Expect = 0.22
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 52 SPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNP 92
SP R P Q A PE Q P P NP++AGA SS ++NP
Sbjct: 1947 SPAREPSPNPVQAGAPPEQQNPTPPNPVQAGA--SSEQQNP 1985
>03_03_0256 + 15898702-15900420
Length = 572
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 42 NPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGK 89
NP DEW+L + PW+G+ EA P + + A A + + K
Sbjct: 178 NPASDEWILRNKQ---SPWAGKKEAPPAELTEEQRQYAEAHAAKKAEK 222
>03_06_0039 + 31235840-31236214,31237057-31237674
Length = 330
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVD 225
WA S L N P+I + ++E A GNS L++
Sbjct: 141 WAMSLLLNHPKILKKAKAEIDASVGNSRLIN 171
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 29.9 bits (64), Expect = 3.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 248 VPYWAVWPYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNT 290
+P A WP E +LLP+ +PA++ G+++++ +L +
Sbjct: 1007 LPRSATWPNEGLLLPIFELGLMCCSSSPAERMGISDVVVKLKS 1049
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 29.1 bits (62), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 172 WVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRI 206
+++ E ++ C PHPH ASS + N+ +I
Sbjct: 361 FLRAMEGDECVVNCIEPHPHTMTIASSGIDNDVKI 395
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 56 CLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTYVFPND 103
C+ PW Q + P + P P++ R+G+ RSS + + S V +D
Sbjct: 218 CIIPWLVQHNSCPVCRHPLPSSSHRSGSTRSSSTHSNEAISHGVARSD 265
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.7 bits (61), Expect = 8.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 224
WA S L N P I + Q+E GNS L+
Sbjct: 329 WAMSLLLNHPEILKKAQAEIDMSVGNSRLI 358
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 28.7 bits (61), Expect = 8.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLV 224
WA S L N P + Q+E A GNS L+
Sbjct: 324 WAMSLLLNHPETLKKAQAEIDASVGNSRLI 353
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,056
Number of Sequences: 37544
Number of extensions: 430366
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 10
length of query: 378
length of database: 14,793,348
effective HSP length: 83
effective length of query: 295
effective length of database: 11,677,196
effective search space: 3444772820
effective search space used: 3444772820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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