GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
         (378 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...   318   5e-87
U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    31   1.0  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    31   1.0  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    31   1.0  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    30   3.1  

>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score =  318 bits (780), Expect = 5e-87
 Identities = 158/345 (45%), Positives = 205/345 (59%), Gaps = 10/345 (2%)

Query: 40  RYNPLKDEWVLVSPHRCLRPWSG-QTE-----AAPEDQPPDPNNPLRAGALRSSGKRNPD 93
           RYNPL DEWV+V+ +R  RPW G +TE     +   +      NPL  G  RSSG  N +
Sbjct: 9   RYNPLIDEWVIVAVNRINRPWQGAKTEKSTTISTSSNTEQSILNPLAPGGTRSSGIANEN 68

Query: 94  YTSTYVFPNDFXXXXXXXX-XXXXXXXXXFQSAPAKGTCRVMCFHPDSTMTIPLMKXXXX 152
           Y STYVF NDF                  F+    KG C+V+C+HP+S +T+  M     
Sbjct: 69  YVSTYVFDNDFPSFTEFEECAGKDENDDLFKQHEVKGVCKVICYHPNSQLTLATMDVKEV 128

Query: 153 XXXXXXWINQLNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQS 212
                 W  Q  ELG +Y WVQIFEN+GA++GCSN HPH Q+WAS++LP  P  K   Q 
Sbjct: 129 RVVIDIWNQQYLELGPKYEWVQIFENRGAVVGCSNMHPHGQLWASNYLPTLPMKKHESQK 188

Query: 213 EYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVWPYETMLLPLNGAPQRLTD 272
           +++ K+G  +L+DYL+QE   KERI+++N  W  +VPYWA WPYETMLLP N   +R TD
Sbjct: 189 KHFEKHGKVMLMDYLEQETLKKERIIMRNEHWTWLVPYWAFWPYETMLLP-NRHVERFTD 247

Query: 273 LNPAQKKGLAEIMKQLNTKYDNLFECSFPYSMGWHGAPTGPGTTRGDSXXXXXXXXXXXX 332
           L   +K+ L+EI++ L  KYDN+FECSFPY MGW GAPTG   T   S            
Sbjct: 248 LGEVEKQSLSEILRSLLIKYDNVFECSFPYMMGWSGAPTGSFLTENCS-FWQLHLSFFPP 306

Query: 333 XXRSATIKKFMVGFEMLAQTQRDLTPEQAAKRLRDCDHLIHYKNR 377
             RSAT+ KF+ G+E+ A+ QRDL+PE AAK L + D   HY  +
Sbjct: 307 LLRSATVPKFLAGYEVFAEKQRDLSPEIAAKTLSEIDE-EHYSKK 350


>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
           W   +L N P ++ +CQ E    +GN  + D  K       R  L   + +A V  WA+ 
Sbjct: 370 WGIIYLLNNPEVQAKCQMEILDVFGND-IPDMGKMNQTPYVRATLSEIQRLANVLPWAI- 427

Query: 255 PYETM 259
           P++T+
Sbjct: 428 PHKTI 432


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
           W   +L N P ++ +CQ E    +GN  + D  K       R  L   + +A V  WA+ 
Sbjct: 385 WGIIYLLNNPEVQAKCQMEILDVFGND-IPDMGKMNQTPYVRATLSEIQRLANVLPWAI- 442

Query: 255 PYETM 259
           P++T+
Sbjct: 443 PHKTI 447


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
           W   +L N P ++ +CQ E    +GN  + D  K       R  L   + +A V  WA+ 
Sbjct: 370 WGIIYLLNNPEVQAKCQMEILDVFGND-IPDMGKMNQTPYVRATLSEIQRLANVLPWAI- 427

Query: 255 PYETM 259
           P++T+
Sbjct: 428 PHKTI 432


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 186 SNPHPHCQIWASSFLPN--EPRIKDRCQSEYYAKYGNSLLVDYLKQ-ELKLKERIVLKNS 242
           S P P C   AS  +P+    +I+D+ + +  A  G+ ++V+  KQ E  + ER++  NS
Sbjct: 309 SAPIPRCL--ASCRVPHIQNGKIRDKSEGQLIAS-GSKVIVECNKQHEANIDERLICSNS 365

Query: 243 EW 244
            W
Sbjct: 366 TW 367


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,440,335
Number of Sequences: 27539
Number of extensions: 378487
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 5
length of query: 378
length of database: 12,573,161
effective HSP length: 83
effective length of query: 295
effective length of database: 10,287,424
effective search space: 3034790080
effective search space used: 3034790080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)