GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001613-TA|BGIBMGA001613-PA|IPR001937|Galactose-1-
phosphate uridyl transferase, class I, IPR011573|Galactose-1-phosphate
uridyl transferase, IPR005849|Galactose-1-phosphate uridyl
transferase, N-terminal, IPR005850|Galactose-1-phosphate uridyl
transferase, C-terminal
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18200.1 68418.m02136 expressed protein                             63   3e-10
At3g61030.1 68416.m06828 C2 domain-containing protein similar to...    30   2.9  
At3g60950.1 68416.m06819 C2 domain-containing protein similar to...    30   2.9  
At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase, ...    29   5.1  
At3g26310.1 68416.m03283 cytochrome P450 family protein contains...    29   5.1  
At2g25160.1 68415.m03009 cytochrome P450, putative similar to cy...    29   5.1  
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea...    28   8.9  
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea...    28   8.9  

>At5g18200.1 68418.m02136 expressed protein
          Length = 351

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 67/296 (22%), Positives = 125/296 (42%), Gaps = 36/296 (12%)

Query: 34  HEHQHIRYNPLKDEWVLVSPHRCLRPWSGQTEAAPEDQPPDPNN-PLRAGALRSSGK--- 89
           ++   +R +P+ + WV+ SP R  RP   ++++ P++  P P++ P   G  +       
Sbjct: 20  NQSPELRKDPVTNRWVIFSPARAKRPTDFKSKS-PQNPNPKPSSCPFCIGREQECAPELF 78

Query: 90  RNPDYTSTYVFPNDFXXXXXXXXXXXXXXXXXFQSAPAKGTCRVMC---FH------PDS 140
           R PD+      PN                     + P  GT R +    FH      P  
Sbjct: 79  RVPDHD-----PNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVH 133

Query: 141 TMTIPLMKXXXXXXXXXXWINQLNELGQR--YTWVQIFENKGAIMGCSNPHPHCQIWASS 198
           ++ +  +           +  ++N++ Q     ++Q+F+N+GA  G S  H H Q+ A  
Sbjct: 134 SIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALP 193

Query: 199 FLPNEPRIKDRCQ--SEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVWPY 256
            +P  P +  R     +Y+ + G   L      E K K  ++ ++S +V++ P+ A +P+
Sbjct: 194 VVP--PTVSSRLDGTKDYFEETGKCCLC-----EAKSKHFVIDESSHFVSVAPFAATYPF 246

Query: 257 ETMLLPLNGAP--QRLTDLNPAQKKGLAEIMKQLNTKYDNLFECSFPYSMGWHGAP 310
           E  ++P + +     L D+      GL ++M Q   K  N      PY+   H +P
Sbjct: 247 EIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLN----DPPYNYMIHTSP 298


>At3g61030.1 68416.m06828 C2 domain-containing protein similar to
           CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
           profile PF00168: C2 domain
          Length = 592

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 254 WPYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNLFE 297
           WP+  ++ P+ G P  L+D     ++ L  I   LN  +D  FE
Sbjct: 187 WPHR-IVFPIGGIPVDLSDFELKPQRKLIAIENNLNPVWDQTFE 229


>At3g60950.1 68416.m06819 C2 domain-containing protein similar to
           CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
           profile PF00168: C2 domain
          Length = 592

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 254 WPYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNLFE 297
           WP+  ++ P+ G P  L+D     ++ L  I   LN  +D  FE
Sbjct: 187 WPHR-IVFPIGGIPVDLSDFELKPQRKLIAIENNLNPVWDQTFE 229


>At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase,
           putative strong similarity to L-galactono-1,4-lactone
           dehydrogenase, Brassica oleracea, Z97060 [gi:2760543],
           and gi:3986289 from Ipomea batatas
          Length = 610

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 52  SPHRCLRPWSGQTEAAPEDQPPDPNNPLRAGALRSSGKRNPDYTSTYVF 100
           SPHR L   +GQT   P   PP P  P  A A  +  ++   Y +  +F
Sbjct: 30  SPHRTLCT-TGQTLTPPPPPPPRPPPPPPATASEAQFRKYAGYAALAIF 77


>At3g26310.1 68416.m03283 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 500

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 195 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 254
           WA + L   PR+  + QSE   + GN  ++ +   +     ++V+K +        W + 
Sbjct: 311 WAMTELARNPRVMKKVQSEIRTQMGNRSMISFEDMDQLEYLKMVIKET--------WRLH 362

Query: 255 PYETMLLP 262
           P   +LLP
Sbjct: 363 PTTPLLLP 370


>At2g25160.1 68415.m03009 cytochrome P450, putative similar to
           cytochrome p450(CYP82C1p) GI:2739004 from [Glycine max]
          Length = 527

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 194 IWASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLK 240
           +WA S L N P +  + Q E  +K G   +V    +EL +K+ + L+
Sbjct: 325 VWAVSLLLNNPHVLRKAQEELDSKIGKERVV----EELDIKDLVYLQ 367


>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
           family protein contains 6 (3 significant) WD-40 repeats;
            similar to PC326 protein  (GI:200241) (PIR2:S37694)
           [Mus musculus]; Human (H326) mRNA, Homo sapiens,
           gb:U06631
          Length = 496

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 173 VQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRI 206
           +++ E    ++ C  PHPH  + ASS + ++ ++
Sbjct: 369 IRVMEADRHVVNCIEPHPHIPVLASSGIESDIKV 402


>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to damage-specific DNA-binding protein 2 (DDB2)
           [Mus musculus]
          Length = 516

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 242 SEWVAIVPYWAVWPYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNLFECSFP 301
           S W++   + AVW ++   + +    +++  +NP  K+ + E+   L         C  P
Sbjct: 439 SRWIS--KFKAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELHNPLQRAIPCRIHC-HP 495

Query: 302 YSMGWHGAPTGPG 314
           Y++G     T  G
Sbjct: 496 YNVGTLAGSTAGG 508


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,725
Number of Sequences: 28952
Number of extensions: 350251
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 8
length of query: 378
length of database: 12,070,560
effective HSP length: 82
effective length of query: 296
effective length of database: 9,696,496
effective search space: 2870162816
effective search space used: 2870162816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)