Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001612-TA|BGIBMGA001612-PA|IPR007087|Zinc finger,
C2H2-type
(176 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 55 2e-08
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 43 1e-04
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 38 0.003
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 37 0.007
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 36 0.012
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 36 0.020
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 35 0.035
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 35 0.035
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 35 0.035
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 34 0.047
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 34 0.047
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 34 0.047
At1g13400.1 68414.m01562 zinc finger (C2H2 type) family protein ... 34 0.047
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 34 0.062
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 34 0.062
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 34 0.062
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 34 0.062
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 33 0.082
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 33 0.082
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 33 0.082
At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ... 33 0.11
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 32 0.19
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 32 0.19
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 32 0.25
At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein ... 31 0.33
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 31 0.44
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 31 0.44
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 31 0.44
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 30 0.76
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 30 1.0
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 30 1.0
At5g06070.1 68418.m00673 zinc finger (C2H2 type) family protein ... 29 1.3
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 29 1.3
At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein ... 29 1.3
At1g69060.1 68414.m07902 expressed protein 29 1.3
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 29 1.8
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 29 1.8
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 29 1.8
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 29 1.8
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 29 1.8
At5g36740.1 68418.m04402 PHD finger family protein 29 2.3
At5g36670.1 68418.m04388 PHD finger family protein 29 2.3
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 29 2.3
At3g46090.1 68416.m04987 zinc finger (C2H2 type) family protein ... 29 2.3
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 2.3
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 29 2.3
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 29 2.3
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 29 2.3
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 28 3.1
At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protei... 28 3.1
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 4.1
At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein ... 28 4.1
At4g17810.1 68417.m02657 zinc finger (C2H2 type) family protein ... 28 4.1
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf... 28 4.1
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 28 4.1
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 28 4.1
At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein ... 28 4.1
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 28 4.1
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r... 28 4.1
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 28 4.1
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 27 5.4
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 27 5.4
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 27 5.4
At1g60250.1 68414.m06785 zinc finger (B-box type) family protein... 27 5.4
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 27 7.1
At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ... 27 7.1
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ... 27 7.1
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ... 27 7.1
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ... 27 7.1
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 27 7.1
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 27 7.1
At1g04650.1 68414.m00462 hypothetical protein 27 7.1
At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein ... 27 9.4
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 27 9.4
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 27 9.4
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 27 9.4
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 27 9.4
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ... 27 9.4
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi... 27 9.4
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 27 9.4
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 27 9.4
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 55.2 bits (127), Expect = 2e-08
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 31 YTCQYCRLKFTQNSQLFRHMTSNHEI--------------QQKTATFECNECQIVFNKKS 76
Y CQYC + ++N + +H+ S+H++ ++ ++ C EC F K +
Sbjct: 20 YLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKKPA 79
Query: 77 NLDLHCQTHHQIKS-KSKCDSCAITFKSRYCLRRHLKL-KQQLAENSCIHCQKKFTSKDG 134
+L H Q+H +S D CA +++ + L RHL K +L + +C+ +F+ +
Sbjct: 80 HLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGN 139
Query: 135 LAKHMRNKHCDQS 147
+ +H++ H + +
Sbjct: 140 VGRHVKKYHSNDN 152
Score = 44.0 bits (99), Expect = 6e-05
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 23 EIDEKHYI-YTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLH 81
E+DE+ +TCQ C +F + + L +HM S H + +++ T ++C + +K +L+ H
Sbjct: 57 EVDEESSSNHTCQECGAEFKKPAHLKQHMQS-HSL-ERSFTCYVDDCAASYRRKDHLNRH 114
Query: 82 CQTHHQIKSKSKCDSCAITFKSRYCLRRHLK 112
TH K ++C F + + RH+K
Sbjct: 115 LLTHKGKLFKCPKENCKSEFSVQGNVGRHVK 145
Score = 43.2 bits (97), Expect = 1e-04
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 65 CNE--CQIVFNKKSNLDLHCQTHHQIKS-KSKCDS--CAITFKSRYCLRRHLKLKQQLAE 119
C E C F S L H +H ++ S ++ C C F + CL+ H++ Q
Sbjct: 217 CKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ--H 274
Query: 120 NSCIHCQKKFTSKDGLAKHMRNKHCDQSV-MFECRV--CSVKFKAAESLQSHVNRIH 173
+C C K K+ + +H+R D S +C V CS F A +LQ H+ +H
Sbjct: 275 INCEICGSKHLKKN-IKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
Score = 35.9 bits (79), Expect = 0.015
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 36 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCD 95
C F SQL +H S+ ++ A C F + L H ++ HQ C+
Sbjct: 222 CGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ---HINCE 278
Query: 96 SCAITFKSRYCLRRHLKLKQQLAENSCIHCQ-----KKFTSKDGLAKHMRNKHCDQSVMF 150
C + ++RHL+ + + I C+ F+ L KHM+ H D F
Sbjct: 279 ICGSKHLKKN-IKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH-DDIRPF 336
Query: 151 ECRV--CSVKFKAAESLQSHVN 170
C C ++F H N
Sbjct: 337 VCGFPGCGMRFAYKHVRNKHEN 358
Score = 33.5 bits (73), Expect = 0.082
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 65 CNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIH 124
C C I +K + H Q+HHQ++ + + D A ++ + ++C
Sbjct: 22 CQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVD-----------EESSSNHTCQE 70
Query: 125 CQKKFTSKDGLAKHMRNKHCDQSVMFECRV--CSVKFKAAESLQSHV 169
C +F L +HM++ ++S F C V C+ ++ + L H+
Sbjct: 71 CGAEFKKPAHLKQHMQSHSLERS--FTCYVDDCAASYRRKDHLNRHL 115
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 43.2 bits (97), Expect = 1e-04
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 65 CNE--CQIVFNKKSNLDLHCQTHHQIKS-KSKCDS--CAITFKSRYCLRRHLKLKQQLAE 119
C E C F S L H +H ++ S ++ C C F + CL+ H++ Q
Sbjct: 129 CKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ--H 186
Query: 120 NSCIHCQKKFTSKDGLAKHMRNKHCDQSV-MFECRV--CSVKFKAAESLQSHVNRIH 173
+C C K K+ + +H+R D S +C V CS F A +LQ H+ +H
Sbjct: 187 INCEICGSKHLKKN-IKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
Score = 35.9 bits (79), Expect = 0.015
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 36 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCD 95
C F SQL +H S+ ++ A C F + L H ++ HQ C+
Sbjct: 134 CGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQ---HINCE 190
Query: 96 SCAITFKSRYCLRRHLKLKQQLAENSCIHCQ-----KKFTSKDGLAKHMRNKHCDQSVMF 150
C + ++RHL+ + + I C+ F+ L KHM+ H D F
Sbjct: 191 ICGSKHLKKN-IKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH-DDIRPF 248
Query: 151 ECRV--CSVKFKAAESLQSHVN 170
C C ++F H N
Sbjct: 249 VCGFPGCGMRFAYKHVRNKHEN 270
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 58 QKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLK 112
+++ T ++C + +K +L+ H TH K ++C F + + RH+K
Sbjct: 3 ERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVK 57
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 112 KLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVNR 171
K K+ + C +C ++F + L +H + KH F+C VC K A + HV +
Sbjct: 4 KKKRATEKVWCYYCDREFDDEKILVQHQKAKH------FKCHVCHKKLSTASGMVIHVLQ 57
Query: 172 IHR 174
+H+
Sbjct: 58 VHK 60
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 37.1 bits (82), Expect = 0.007
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHH-QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA 118
T F C C F ++ NL LH + H+ K K K + + K C
Sbjct: 3 TNRFFCEICNKGFQREQNLQLHKRGHNLPWKLKQKTNKNQVKKKVYIC-----------P 51
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVNRI 172
E SC+H D G+ KH KH ++ ++C CS K+ ++H N+I
Sbjct: 52 EKSCVHHDPARALGDLTGIKKHFSRKHGEKK--WKCDKCSKKYAVISDWKAH-NKI 104
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 36.3 bits (80), Expect = 0.012
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 114 KQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVNRIH 173
KQ L E S +KK SK+G K K ++ECR CS+KF +++L H+NR H
Sbjct: 23 KQALEEGSSSGQRKKKGSKEG--KDESGK------VYECRFCSLKFCKSQALGGHMNR-H 73
Query: 174 RR 175
R+
Sbjct: 74 RQ 75
Score = 33.5 bits (73), Expect = 0.082
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 2 NKKXXXXXXXXXXXXXXXKNEEIDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTA 61
NK+ E DE +Y C++C LKF ++ L HM + H +++T
Sbjct: 22 NKQALEEGSSSGQRKKKGSKEGKDESGKVYECRFCSLKFCKSQALGGHM-NRHRQERETE 80
Query: 62 T 62
T
Sbjct: 81 T 81
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 35.5 bits (78), Expect = 0.020
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 31 YTCQYCRLKFTQNSQLFRHMTSNHEIQ--QKTATFECNECQIVFNKKSNLDLHCQTHH-- 86
+ C C F + L H+ H +Q +K +C C F K L +H Q H
Sbjct: 496 FACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVHVQAVHPS 555
Query: 87 QIKSKSKCDSCAIT---FKSRYCLRRHLKLKQQLAENS-------CIHCQKKFTSKDGLA 136
+ KS + C +T F + + Q EN+ C C KF L
Sbjct: 556 ECKSLTVASECNLTNGEFSQKPEAGSSQIVVSQNNENTSGVHKFVCKFCGLKFNLLPDLG 615
Query: 137 KHMRNKHCDQSVM 149
+H + +H S++
Sbjct: 616 RHHQAEHMGPSLV 628
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 112 KLKQQLAENSCIHCQKKFTSKDGLAKHMRNKH----CDQSVMFECRVCSVKFKAAESLQS 167
K K + +C C F + L H+ +H ++ ++ +C C F E L
Sbjct: 488 KEKWSFSGFACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLV 547
Query: 168 HVNRIH 173
HV +H
Sbjct: 548 HVQAVH 553
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 34.7 bits (76), Expect = 0.035
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 9/145 (6%)
Query: 29 YIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQT--HH 86
Y + CQ C F +++ L HM + H + KT + +L H + H
Sbjct: 215 YTHYCQICGKGFKRDANLRMHMRA-HGDEYKTREALISPTSQDKKGGYSLKKHYYSCPQH 273
Query: 87 QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQ-KKFTSKDGLAKHMRNKHCD 145
+ + + KS C + H K C C K F+ L H KHC
Sbjct: 274 GCRWNQRHEKFQ-PLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSDLRTH--EKHCG 330
Query: 146 QSVMFECRVCSVKFKAAESLQSHVN 170
+ + C C KF + L SHV+
Sbjct: 331 D-IKWVCS-CGTKFSRKDKLMSHVS 353
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 34.7 bits (76), Expect = 0.035
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 26 EKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFE-CNEC-QIVFNKKSNLDLHCQ 83
E+ Y+ + C KF +S+L RH + + T+E C + + FN +S++ H Q
Sbjct: 105 ERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQ 164
Query: 84 THHQIKSKSKCDSCAITFKSRYCLRRHL 111
++ I S C + Y L+ H+
Sbjct: 165 ENYHICPYS---GCVKRYAHEYKLKNHV 189
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 34.7 bits (76), Expect = 0.035
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHH-QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA 118
T F C C F + NL LH + H+ K K + + I K C
Sbjct: 96 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVC-----------P 144
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
E SC+H D G+ KH KH ++ ++C CS K+ ++H
Sbjct: 145 EASCVHHDPSRALGDLTGIKKHFCRKHGEKK--WKCDKCSKKYAVQSDCKAH 194
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 34.3 bits (75), Expect = 0.047
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA- 118
T F C C F + NL LH + H+ + +K R + +K K +
Sbjct: 60 TNRFVCEICNKGFQRDQNLQLHRRGHN------------LPWKLRQKSNKEVKKKVYVCP 107
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
E SC+H D G+ KH KH ++ ++C CS K+ ++H
Sbjct: 108 EVSCVHHDPSRALGDLTGIKKHFCRKHGEKK--WKCDKCSKKYAVQSDWKAH 157
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 34.3 bits (75), Expect = 0.047
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 65 CNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 122
C C +FN++ +L H + + + +C C KS +R HL + L++ +C
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNC 76
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 112 KLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVN 170
K ++ + C+ C K F ++ L +HM+ + C VC K+ ES++ H+N
Sbjct: 9 KRRKISVRHRCVACYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHLN 66
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 34.3 bits (75), Expect = 0.047
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 65 CNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 122
C C +FN++ +L H + + + +C C KS +R HL + L++ +C
Sbjct: 19 CVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHLSKGNC 76
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 112 KLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVN 170
K ++ + C+ C K F ++ L +HM+ + C VC K+ ES++ H+N
Sbjct: 9 KRRKISVRHRCVACYKMFNRREHLVEHMKISY-HSLHQPRCGVCLKHCKSFESVREHLN 66
>At1g13400.1 68414.m01562 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 240
Score = 34.3 bits (75), Expect = 0.047
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 140 RNKHCDQSVMFECRVCSVKFKAAESLQSHVNRIHRR 175
R K +ECR CS+KF +++L H+NR HR+
Sbjct: 73 REKQTKDGKEYECRFCSLKFFKSQALGGHMNR-HRQ 107
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 31 YTCQYCRLKFTQNSQLFRHMTSNHEIQQKT 60
Y C++C LKF ++ L HM + H +++T
Sbjct: 83 YECRFCSLKFFKSQALGGHM-NRHRQERET 111
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 33.9 bits (74), Expect = 0.062
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 95 DSCAITFKSRYCLRRHLKLKQQLAENSCIH--CQKKFTSKDGLAKHMRNKHCDQSVMFEC 152
+ C +TF+S+ L+ H + N C H C KKF + L H R H D+ FEC
Sbjct: 1220 EGCKMTFESKAKLQTHKR-------NRCTHEGCGKKFRAHKYLVLHQR-VHKDER-PFEC 1270
Query: 153 --RVCSVKFKAAESLQSHVNRIH 173
+ CS+ FK + H+ R+H
Sbjct: 1271 SWKGCSMTFKWQWARTEHL-RLH 1292
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 33.9 bits (74), Expect = 0.062
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA- 118
T F C+ C F ++ NL LH + H+ + +K + + +K K L
Sbjct: 80 TNRFICDVCNKGFQREQNLQLHRRGHN------------LPWKLKQKSTKEVKRKVYLCP 127
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
E +C+H D G+ KH KH ++ ++C CS ++ ++H
Sbjct: 128 EPTCVHHDPSRALGDLTGIKKHYYRKHGEKK--WKCEKCSKRYAVQSDWKAH 177
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 33.9 bits (74), Expect = 0.062
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA- 118
T F C C F ++ NL LH + H+ + +K + + +K K L
Sbjct: 78 TNRFICEVCNKGFQREQNLQLHRRGHN------------LPWKLKQKSTKEVKRKVYLCP 125
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
E SC+H D G+ KH KH ++ ++C CS ++ ++H
Sbjct: 126 EPSCVHHDPSRALGDLTGIKKHYYRKHGEKK--WKCDKCSKRYAVQSDWKAH 175
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 33.9 bits (74), Expect = 0.062
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAE 119
T F C C F ++ NL LH + H + K K KS +RR + L E
Sbjct: 79 TNRFLCEVCNKGFQREQNLQLH-RRGHNLPWKLK-------QKSNKEVRRKVYL---CPE 127
Query: 120 NSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
SC+H D G+ KH KH ++ ++C CS ++ ++H
Sbjct: 128 PSCVHHDPARALGDLTGIKKHYYRKHGEKK--WKCDKCSKRYAVQSDWKAH 176
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 33.5 bits (73), Expect = 0.082
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHH-QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA 118
T F C C F + NL LH + H+ K K + + + K C
Sbjct: 65 TNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYIC-----------P 113
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
E +C+H D G+ KH KH ++ ++C CS K+ ++H
Sbjct: 114 EKTCVHHDPARALGDLTGIKKHFSRKHGEKK--WKCDKCSKKYAVMSDWKAH 163
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 33.5 bits (73), Expect = 0.082
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 87 QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQ 146
Q KS KC C +F+ L H ++ + + E +++F+ ++ +
Sbjct: 38 QSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLS---KQEFSEVYPRKSKLQKRPESS 94
Query: 147 SVMFECRVCSVKFKAAESLQSHVNRIHR 174
S +EC+VC F L H ++HR
Sbjct: 95 SSCYECKVCGKIFGCYRGLGGH-TKLHR 121
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 33.5 bits (73), Expect = 0.082
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHH-QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLA 118
T F C C F + NL LH + H+ K K + + + K C
Sbjct: 89 TNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVC-----------P 137
Query: 119 ENSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
E C+H D G+ KH KH ++ ++C CS K+ ++H
Sbjct: 138 EPGCVHHHPSRALGDLTGIKKHFFRKHGEKK--WKCEKCSKKYAVQSDWKAH 187
>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 137
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 122 CIHCQKKFTSKDGLAKHMRNKHCDQSV----MFECRVCSVKFKAAESLQSHVNRIHRR 175
C +S+ G +H R S M+EC C F A++L H+N IHRR
Sbjct: 3 CERSSSSTSSETGAVRHRRTSSSSVSTVTRRMYECTFCKRGFTNAQALGGHMN-IHRR 59
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 33 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKS 92
C++CR F +++L+ HM++ H + + + + +L++H + H +
Sbjct: 200 CEFCRNPFYGDNELYTHMSTEHYTCHLCQRSQPGQYE-YYKNYDDLEIHFRRDHFLCEDD 258
Query: 93 KCDSCAIT-FKSRYCLRRH 110
C + T F++ L+RH
Sbjct: 259 SCLAKKFTVFQNESELKRH 277
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 118 AENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAA--ESLQSHVNRIH 173
A+N C+ C+++F +H + HCD CR C ESL +H +++H
Sbjct: 198 ADNKCLLCEEEFDQ-----QHPKIHHCDVCNFTICRACMKNAPPVRIESLTTHEHQLH 250
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 31.9 bits (69), Expect = 0.25
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 101 FKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFK 160
F+ + C +R Q L + H + K T + KH+ N + +C +CS F
Sbjct: 47 FECKTCNKRFSSF-QALGGHRASHKKPKLTVEQKDVKHLSNDYKGNH-FHKCSICSQSFG 104
Query: 161 AAESLQSHVNRIHR 174
++L H+ R HR
Sbjct: 105 TGQALGGHMRR-HR 117
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 117 LAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
+A+ I Q + GL +H + +Q FEC+ C+ +F + ++L H
Sbjct: 17 IAKCLMILAQTSMVKQIGLNQHTESHTSNQ---FECKTCNKRFSSFQALGGH 65
>At3g46080.1 68416.m04986 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 164
Score = 31.5 bits (68), Expect = 0.33
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 101 FKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFK 160
F+ + CL+ Q L + H + +S L + NK + C +C V+F
Sbjct: 37 FRCKTCLKEFSSF-QALGGHRASHKKLINSSDPSLLGSLSNKKTKTATSHPCPICGVEFP 95
Query: 161 AAESLQSHVNRIHR 174
++L H+ R HR
Sbjct: 96 MGQALGGHMRR-HR 108
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 31.1 bits (67), Expect = 0.44
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 17/112 (15%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAE 119
T F C C F + NL LH + H+ + +K R + ++ K +
Sbjct: 58 TNRFVCEICNKGFQRDQNLQLHRRGHN------------LPWKLRQRSTKEVRKKVYVCP 105
Query: 120 -NSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
+ C+H D G+ KH KH ++ ++C CS K+ ++H
Sbjct: 106 VSGCVHHDPSRALGDLTGIKKHFCRKHGEKK--WKCEKCSKKYAVQSDWKAH 155
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 120 NSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHV 169
N C C ++F K+ L +HMR + C +C+ ++ +SL+ H+
Sbjct: 6 NKCGGCYRQFNKKEHLVEHMRISYHSVHEP-TCGICNKHCRSFDSLREHL 54
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHL 111
T +C C FNKK +L H + + + C C +S LR HL
Sbjct: 3 TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHL 54
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 31.1 bits (67), Expect = 0.44
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 20 KNEEIDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEI---QQKTATFECNECQIVFNKKS 76
+N+++ E+ Y+ C K Q SQ H S + K ++CN C+ F
Sbjct: 61 QNQDLTEEEYLALCLLMLAK-DQPSQTRFHQQSQSLTPPPESKNLPYKCNVCEKAFPSYQ 119
Query: 77 NLDLHCQTHHQIK-----SKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTS 131
L H + H+IK S + DS A T + + ++ E C C K F +
Sbjct: 120 ALGGH-KASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHE--CSICHKVFPT 176
Query: 132 KDGLAKHMR 140
L H R
Sbjct: 177 GQALGGHKR 185
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 30.3 bits (65), Expect = 0.76
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 63 FECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 122
F C+ C FN+ +N+ +H H + + DS T + LR + +N+
Sbjct: 180 FACSICSKTFNRYNNMQMHMWGHGS-EFRKGADSLKGTIQPAAILRLPCYCCAEGCKNNI 238
Query: 123 IHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSH 168
H + K KD L H + KH S F C C ++H
Sbjct: 239 NHPRSK-PLKDFRTLQTHYKRKH--GSKPFSCGKCGKALAVKGDWRTH 283
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 107 LRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQ 166
L+ H K K SC C K K H K+C + ++ C C FK SL+
Sbjct: 252 LQTHYKRKHGSKPFSCGKCGKALAVKGDWRTH--EKNCGK--LWYC-TCGSDFKHKRSLK 306
Query: 167 SHV 169
H+
Sbjct: 307 DHI 309
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 120 NSCIHCQKKFTSKDGLAKHMR-NKHCDQSVMFECRVCSVKFKAAESLQSHV 169
N C C ++F + L +HM+ + H C VC ++ ESL+ H+
Sbjct: 15 NKCAACYRQFNKLEHLVEHMKISYHSGHEP--TCGVCKKHCRSFESLREHL 63
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 107 LRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQ 166
L+ H K K + +C C K F K H K+C + ++ C C FK SL+
Sbjct: 327 LQTHYKRKHGVRPFACRRCGKAFAVKGDWRTH--EKNCGK--LWYCS-CGSDFKHKRSLK 381
Query: 167 SHV 169
HV
Sbjct: 382 DHV 384
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 47 FRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYC 106
FR + ++++ + F C C F K + +TH + K SC FK +
Sbjct: 324 FRTLQTHYKRKHGVRPFACRRCGKAFAVKGDW----RTHEKNCGKLWYCSCGSDFKHKRS 379
Query: 107 LRRHLK 112
L+ H+K
Sbjct: 380 LKDHVK 385
>At5g06070.1 68418.m00673 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 226
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 150 FECRVCSVKFKAAESLQSHVNRIHRR 175
+ C C +FK+A++L H+N +HRR
Sbjct: 55 YSCSFCGREFKSAQALGGHMN-VHRR 79
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 29.5 bits (63), Expect = 1.3
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 60 TATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAE 119
T F C C F + NL LH + H + K K + + K E
Sbjct: 79 TNRFVCEICNKGFQRDQNLQLH-RRGHNLPWK---------LKQKNTKEQQKKKVYVCPE 128
Query: 120 NSCIHCQKKFTSKD--GLAKHMRNKHCDQSVMFECRVCSVKFKAAES 164
+C H D G+ KH KH ++ ++C CS KF A +S
Sbjct: 129 TNCAHHHPSRALGDLTGIKKHFCRKHGEKK--WKCEKCS-KFYAVQS 172
>At2g29660.1 68415.m03605 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 373
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 49 HMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQ----IKSKSKCDSCAITFKS 103
H + EI F CN C +F K + L+ H H I +S + I FKS
Sbjct: 112 HQQTEFEISSSDEIFPCNSCGEIFPKINLLENHIAIKHAVSELIAGESSTNIVKIIFKS 170
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 29.5 bits (63), Expect = 1.3
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 56 IQQKTATFECNECQIVFNKKSN----LDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHL 111
IQ+K ATF ++C+ F+ + L T+ S+S C C I S H
Sbjct: 114 IQEKCATFRFSKCKQTFSTMPSHGIRFGLGSDTYSDF-SESDCSDCEILEGS------HR 166
Query: 112 KLKQQLAENSCIHCQKKFTSKDGLAKHM--RNKHCD 145
+++Q + + + KK K GL++ N HCD
Sbjct: 167 DVREQWEQAALLRKMKK-AGKAGLSEEAGPSNLHCD 201
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 28 HYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSN-----LDLHC 82
H Y C C F+ L H TS H T+ N+ ++ N SN +++
Sbjct: 94 HRDYKCTVCGKSFSSYQALGGHKTS-HRKPTNTSITSGNQ-ELSNNSHSNSGSVVINVTV 151
Query: 83 QTHHQIKSKSKCDSCAITFKS 103
T + + K +C+I FKS
Sbjct: 152 NTGNGVSQSGKIHTCSICFKS 172
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 36 CRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHH 86
CRL ++ L+R +H++ ++C C+ FN + LD H T H
Sbjct: 81 CRLH--PDNDLYRDQ-EHHKVHVDVFEWKCGYCKKSFNDEKFLDKHFSTRH 128
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 108 RRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKH 143
+ H K+ + E C +C+K F + L KH +H
Sbjct: 93 QEHHKVHVDVFEWKCGYCKKSFNDEKFLDKHFSTRH 128
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 107 LRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQ 166
L+ H K K + C C K F + H K+C + ++ C +C FK SL+
Sbjct: 288 LQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTH--EKNCGK--LWYC-ICGSDFKHKRSLK 342
Query: 167 SHV 169
H+
Sbjct: 343 DHI 345
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 145 DQSVMFECRVCSVKFKAAESLQSHVNRIHRR 175
D ++ C C KF + SL HV + H R
Sbjct: 208 DNGIVEVCPQCGAKFSSVTSLVEHVEKTHER 238
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 30 IYTCQYCRLKFTQNSQLFRHMTSNHEIQQK----TATFE-CNECQIVFNKKSNLDLHCQT 84
+ C C KF+ + L H+ HE +K T + C C F +L H +
Sbjct: 212 VEVCPQCGAKFSSVTSLVEHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIER 271
Query: 85 HHQIKSKS 92
H+ SK+
Sbjct: 272 DHRGTSKA 279
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 122 CIHCQKKFTSKDGLAKHM-----RNKHCDQS--VMFECRVCSVKFKAAESLQSHVNRIHR 174
C C KF+S L +H+ RNK + + C CS F+ L +H+ R HR
Sbjct: 215 CPQCGAKFSSVTSLVEHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHR 274
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 80 LHCQT--HHQIKSKSKCDSCAITF-KSRYCLRR----HLKLKQQLAENSCIHCQKKFTSK 132
L C+T HH+ K CD+C KS Y L R L L E + H T
Sbjct: 41 LICRTKKHHRTKYHLHCDTCDYDIHKSCYLLPRCRSMPLTRPHTLREGNDYHSSCD-TCG 99
Query: 133 DGLAKHMRNKHCDQSVMFECRVCSV 157
D ++++ R+ HC M +VC++
Sbjct: 100 DEVSENDRSYHCPTCEMCYHKVCNL 124
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 94 CDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECR 153
CD C TF CL +K K C +C KF KD AKH + S CR
Sbjct: 665 CDGCPSTFHQS-CL--DIK-KFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLS---SCR 717
Query: 154 VCSVK 158
+C K
Sbjct: 718 LCEEK 722
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 94 CDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECR 153
CD C TF CL +K K C +C KF KD AKH + S CR
Sbjct: 665 CDGCPSTFHQS-CL--DIK-KFPSGAWYCYNCSCKFCEKDEAAKHETSTLPSLS---SCR 717
Query: 154 VCSVK 158
+C K
Sbjct: 718 LCEEK 722
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 95 DSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRV 154
+ C ++F S L H K+ + C K F S L +H R D+ + +
Sbjct: 1242 EGCTMSFSSEKQLMLH---KRNICPIK--GCGKNFFSHKYLVQHQRVHSDDRPLKCPWKG 1296
Query: 155 CSVKFKAAESLQSHVNRIH 173
C + FK A S H+ R+H
Sbjct: 1297 CKMTFKWAWSRTEHI-RVH 1314
>At3g46090.1 68416.m04987 zinc finger (C2H2 type) family protein
(ZAT7) identical to zinc finger protein ZAT7
[Arabidopsis thaliana] gi|1418341|emb|CAA67234; contains
Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 168
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 94 CDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECR 153
C F+ + CL+ Q L + H + + L + NK S C
Sbjct: 33 CGGDERVFRCKTCLKEFSSF-QALGGHRASHKKLINSDNPSLLGSLSNKKTKTS--HPCP 89
Query: 154 VCSVKFKAAESLQSHVNRIHR 174
+C VKF ++L H+ R HR
Sbjct: 90 ICGVKFPMGQALGGHMRR-HR 109
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 150 FECRVCSVKFKAAESLQSHVNRIHRR 175
+ C C +FK+A++L H+N +HRR
Sbjct: 39 YTCSFCRREFKSAQALGGHMN-VHRR 63
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 96 SCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVC 155
+C + + CL + + L Q A C C+ F G + R +C + C C
Sbjct: 621 ACGLNLTAAICLHKEISLNDQTA---CSSCKSAF----GFTR--RKHNCYNCGLLFCNAC 671
Query: 156 SVKFKAAESLQSHVNRIHR 174
S K SL + +++ R
Sbjct: 672 SSKKAVNASLAPNKSKLSR 690
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 28.7 bits (61), Expect = 2.3
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 63 FECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 122
F C+ C FN+ +N+ +H H K +S T S LR + +N+
Sbjct: 101 FSCSVCNKTFNRFNNMQMHMWGHGSQYRKGP-ESLRGTKSSSSILRLPCYCCAEGCKNNI 159
Query: 123 IHCQKKFTSKD--GLAKHMRNKHCDQSVMFECR-VCSVKFKAAESLQSH 168
H + K KD L H + KH + F CR C F ++H
Sbjct: 160 DHPRSK-PLKDFRTLQTHYKRKH--GAKPFRCRKKCEKTFAVRGDWRTH 205
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 57 QQKTATFECNECQIVFNKKSNLDLHCQTHHQ-IKSKSKCDSCAITFKSRYCLRRHLKLKQ 115
+++ FEC C+ VF L H +H + I + S + K K K
Sbjct: 154 KKRNKWFECETCEKVFKSYQALGGHRASHKKKIAETDQLGSDELKKK---------KKKS 204
Query: 116 QLAENSCIHCQKKFTSKDGLAKHMRN 141
+ + C C K FTS L H R+
Sbjct: 205 TSSHHECPICAKVFTSGQALGGHKRS 230
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 28.3 bits (60), Expect = 3.1
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 63 FECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 122
+EC C F+ L H +H + ++ ++ K+R L + + +NS
Sbjct: 113 YECKTCNRTFSSFQALGGHRASHKKPRTSTE-------EKTRLPLTQPKSSASEEGQNS- 164
Query: 123 IHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVNRIHR 174
H + ++ A ++ NK + + EC +C +F + ++L H+ R HR
Sbjct: 165 -HFKVSGSALASQASNIINK---ANKVHECSICGSEFTSGQALGGHMRR-HR 211
>At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 466
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 31 YTCQYCR-LKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIK 89
+ CQ C L F++N++ R Q +EC C + +++++ L C Q
Sbjct: 283 WICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSICLKCDHKRQKA 342
Query: 90 SKSKCDS 96
+ DS
Sbjct: 343 ANVTPDS 349
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 118 AENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVC--SVKFKAAESLQSHVNRIH 173
A+ C+ C +KF GL HCD CR C + ES +H +++H
Sbjct: 202 ADKKCLLCDEKFDQDQGL------HHCDVCNFSICRACMKNPPPVGVESPTTHEHQLH 253
>At5g03510.1 68418.m00307 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 292
Score = 27.9 bits (59), Expect = 4.1
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 63 FECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSC 122
++C C F+ L H +H + K + C + + ++ + A S
Sbjct: 118 YQCKTCDKSFHSFQALGGHRASHKKPKLGASVFKCV---EKKTASASTVETVEAGAVGSF 174
Query: 123 IHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVNRIHRRL 176
+ Q TS DG +K H EC +C +F + ++L H+ R HR L
Sbjct: 175 LSLQ--VTSSDG-SKKPEKTH-------ECSICKAEFSSGQALGGHMRR-HRGL 217
>At4g17810.1 68417.m02657 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 180
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 150 FECRVCSVKFKAAESLQSHVNRIHRR 175
+ C C +F++A++L H+N +HRR
Sbjct: 40 YTCNFCRREFRSAQALGGHMN-VHRR 64
>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
profiles PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger, C2H2 type
Length = 472
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 144 CDQSVMFECRVCSVKFKAAESLQSHVN 170
C+ S MF C+ CS + ++ E + HV+
Sbjct: 175 CEVSPMFYCKSCSYQGQSVEGFRRHVS 201
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 150 FECRVCSVKFKAAESLQSHVNRIHRR 175
+ C C +F++A++L H+N +HRR
Sbjct: 47 YTCSFCKREFRSAQALGGHMN-VHRR 71
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 51 TSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIK 89
T + E++++ FEC+ C+ VF L H TH +K
Sbjct: 139 TRSSEVEER---FECDGCKKVFGSHQALGGHRATHKDVK 174
>At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein
(ZFP1) identical to zinc finger protein, ZFP1
gi|790673|gb|AAA87297; contains zinc finger, C2H2 type,
domain, Prosite:PS00028
Length = 228
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 118 AENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQSHVNRIHRR 175
+E + I K +S +H + + D V F C C KF ++++L H N H+R
Sbjct: 37 SELNLIDSFKTSSSSTSHHQHQQEQLADPRV-FSCNYCQRKFYSSQALGGHQN-AHKR 92
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 110 HLKLKQQLAEN---SCIHCQKKFTSKDGLAKHMRNKH 143
H ++QLA+ SC +CQ+KF S L H +N H
Sbjct: 55 HQHQQEQLADPRVFSCNYCQRKFYSSQALGGH-QNAH 90
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 73 NKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHL 111
+KKS + + + S ++CD C F+SR L +HL
Sbjct: 581 SKKSTRGMKTKGTTKKNSSNECDRCGEEFESRTKLHKHL 619
>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1101
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 152 CRVCSVKFKAAESLQSHVNRIH 173
CR CS KF +AE ++H+++ H
Sbjct: 237 CRSCSNKFTSAEECKNHLDQEH 258
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 122 CIHCQKKFTSKDGLAKHMRNKHCDQSVMFECR 153
C C KFTS + H+ +HC + + E +
Sbjct: 237 CRSCSNKFTSAEECKNHLDQEHCAKFIPNETK 268
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.9 bits (59), Expect = 4.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 107 LRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQSVMFECRVCSVKFKAAESLQ 166
L+ H K K +C C K F K H K+C + ++ C C FK SL+
Sbjct: 249 LQTHYKRKHGSKPFACRMCGKAFAVKGDWRTH--EKNCGK--LWYCS-CGSDFKHKRSLK 303
Query: 167 SHV 169
HV
Sbjct: 304 DHV 306
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 47 FRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYC 106
FR + ++++ + + F C C F K + +TH + K SC FK +
Sbjct: 246 FRTLQTHYKRKHGSKPFACRMCGKAFAVKGDW----RTHEKNCGKLWYCSCGSDFKHKRS 301
Query: 107 LRRHLK 112
L+ H+K
Sbjct: 302 LKDHVK 307
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 82 CQTHHQIKSKSKCDSCAITFKSRYCLRRH 110
C+ ++ SK KC SC + + S C + H
Sbjct: 9 CEICEKVVSKYKCPSCLVPYCSLGCFKIH 37
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 33 CQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSKS 92
C++C+ F +++L+ HM+ H + + + + +L++H ++ H +
Sbjct: 200 CEFCKRPFYGDNELYTHMSREHYTCHICQRLKPGQYE-YYGNYDDLEVHFRSDHFLCEDE 258
Query: 93 KC 94
C
Sbjct: 259 TC 260
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 150 FECRVCSVKFKAAESLQSHVNRIHRR 175
+ C C +F++A++L H+N +HRR
Sbjct: 49 YTCSFCRREFRSAQALGGHMN-VHRR 73
>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
contains similarity to zinc finger protein GI:3618320
from [Oryza sativa]
Length = 251
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 68 CQIVFNKKSNLDLHCQTHHQIKSKSKCDSC 97
C++ SN ++C TH+QI CDSC
Sbjct: 147 CELCVASNSNAVVYCPTHNQI----LCDSC 172
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 119 ENSCIHCQKKFTSKDGLAKHMR 140
E +C C KKFTS L HMR
Sbjct: 129 EVACCVCYKKFTSMKALYGHMR 150
>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 191
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 21 NEEI--DEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFEC-NECQIVFNKKSN 77
NE I D K + C YC F + L H ++ +Q+T F + F+++ N
Sbjct: 43 NESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAAAFFHRQQN 102
>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 405
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/88 (19%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 94 CDSCAITFKSRYCLRRHLK-------LKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQ 146
C++C + FK H K LK+++A + + F ++ +NK +
Sbjct: 6 CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGV-TEALFEARQSALAQEKNKSNEA 64
Query: 147 SVMFECRVCSVKFKAAESLQSHV-NRIH 173
+++ C +C+ ++++++ + H+ +R H
Sbjct: 65 PMLYTCAICAKGYRSSKAHEQHLQSRSH 92
>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 404
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/88 (19%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 94 CDSCAITFKSRYCLRRHLK-------LKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQ 146
C++C + FK H K LK+++A + + F ++ +NK +
Sbjct: 6 CNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGV-TEALFEARQSALAQEKNKSNEA 64
Query: 147 SVMFECRVCSVKFKAAESLQSHV-NRIH 173
+++ C +C+ ++++++ + H+ +R H
Sbjct: 65 PMLYTCAICAKGYRSSKAHEQHLQSRSH 92
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 288
Score = 27.1 bits (57), Expect = 7.1
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 89 KSKSKCDSCAITFKSRYCLRRH-LKLKQQLAENSCIHCQKKFTSKDGLAKHMRNKHCDQS 147
K + KC++C FKS L H K+ N+ Q+ T D + + H
Sbjct: 170 KGRYKCETCGKVFKSYQALGGHRASHKKNRVSNNKTE-QRSETEYDNVVVVAKRIH---- 224
Query: 148 VMFECRVCSVKFKAAESLQSH 168
EC +C F + ++L H
Sbjct: 225 ---ECPICLRVFASGQALGGH 242
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 152 CRVCSVKFKAAESLQSHVNRIH 173
CR CS KF + E ++H+ + H
Sbjct: 232 CRTCSKKFSSPEECKNHLGQEH 253
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 27.1 bits (57), Expect = 7.1
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 22 EEIDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLH 81
E+ E+ ++ C++C +F L H+ ++ + + +A + +E +K +D +
Sbjct: 2 EQFKERKFV--CKFCSKRFPCGKSLGGHIRTH--MNENSADSDEDEA----DKLKMIDEN 53
Query: 82 C-QTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAE-NSCIHCQKKFTSKDGLAKHM 139
Q+ + ++ K + + + L++ + +QQL E C C K F S L HM
Sbjct: 54 GGQSSYGLRENPKKNKRFVDHRQIMALKQQQQ-QQQLQELRRCRECGKGFVSSKALCGHM 112
>At1g04650.1 68414.m00462 hypothetical protein
Length = 936
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 24 IDEKHYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNE 67
I +YTCQ T+ +LF T++H + + +E +E
Sbjct: 700 ISRSEQLYTCQEMDNVITELQKLFNSETNHHHNHLRLSKYEMSE 743
>At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein
(ZFP2) identical to zinc finger protein 2 (ZFP2)
GI:790674 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 150
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 73 NKKSNLDLHCQTHHQIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSK 132
N L L +HQ+ + + +++ S L+Q SC +CQ+KF S
Sbjct: 6 NTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVF-SCNYCQRKFYSS 64
Query: 133 DGLAKHMRNKH 143
L H +N H
Sbjct: 65 QALGGH-QNAH 74
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 26.6 bits (56), Expect = 9.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 20 KNEEIDEKHYIYTCQYCRLKFTQNSQLF 47
K +++++ Y Y C C+L+F + +F
Sbjct: 83 KGKDMEDSRYYYYCVTCKLEFHRGCHVF 110
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 26.6 bits (56), Expect = 9.4
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 68 CQIVFNKKSNLDLHCQTHHQIKSKSKCDSCAITF-KSRYCLRRHLKLKQQLAENSCIHCQ 126
C+ K N DL + + K+ +C C T K+ C H+K + ++ C C
Sbjct: 1696 CERYKKFKENPDLSLKDWAKGKNVKECPICKSTIEKTDGC--NHMKCR--CGKHICWTCL 1751
Query: 127 KKFTSKDGLAKHMRNKH 143
FT ++ H+R H
Sbjct: 1752 DVFTQEEPCYAHLRTIH 1768
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 26.6 bits (56), Expect = 9.4
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 28 HYIYTCQYCRLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQ 87
+Y+Y C+ C F L H S+ + K A+F SNLDL T+
Sbjct: 150 YYVYQCKTCDRTFPSFQALGGHRASHKK--PKAASFY-----------SNLDLKKNTYAN 196
Query: 88 IKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENS---CIHCQKKFTSKDGLAKHMR 140
+ S + FK+ R L + + ++N C C +FTS L HMR
Sbjct: 197 -DAVSLVHTTTTVFKNNNS--RSLVVYGKASKNKVHECGICGAEFTSGQALGGHMR 249
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 122 CIHCQKKFTSKDGLAKHMRNKH 143
C C + FTS+ GL H + KH
Sbjct: 262 CKSCTRTFTSEMGLQSHTKAKH 283
>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 75 KSNLDLHCQTHHQIKSKSKCDSCAITF 101
K NL H +K +SKCD C I F
Sbjct: 5 KVNLPFHEHPLTPVKMESKCDWCGIKF 31
>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 394
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 33 CQYC-RLKFTQNSQLFRHMTSNHEIQQKTATFECNECQIVFNKKSNLDLHCQTHHQIKSK 91
C C R+ +NS L+R + S H + TA + N + VF + NL + Q+
Sbjct: 205 CSSCFRMTHHRNSCLYRQIESLHRVTNTTA--QRNVREEVFMRDENLRSSMNSQSQMSES 262
Query: 92 S 92
S
Sbjct: 263 S 263
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 87 QIKSKSKCDSCAITFKSRYCLRRHLKLKQQLAENSCIHCQKKFTSKDGLAKHMRNK 142
++K +C CA K Y + L +A+ S K+ + LAK+M N+
Sbjct: 35 KVKDTFRCPFCAGKKKQHYKYKELLAHASGVAKGSASRSAKQKANHFALAKYMENE 90
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 23 EIDEKHYIYTCQYCRLKFTQNSQLFRHM 50
E+D K + YTC +C + N L + M
Sbjct: 590 ELDPKTWFYTCDFCTITLHVNCLLGKDM 617
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.130 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,043
Number of Sequences: 28952
Number of extensions: 134707
Number of successful extensions: 850
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 182
length of query: 176
length of database: 12,070,560
effective HSP length: 76
effective length of query: 100
effective length of database: 9,870,208
effective search space: 987020800
effective search space used: 987020800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)
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