GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001611-TA|BGIBMGA001611-PA|undefined
         (330 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    30   0.027
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   7.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   7.1  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 163 TTKQEASTTKPLEATNVYQTTRSVPESSTAPTKT---NPAETATPKSNIKTVPTTPEINK 219
           TT    +  +P + T V  + +SVP S ++P +    N  E    K N+  +       K
Sbjct: 203 TTYSFTADFRPPQETPVLASYKSVPMSFSSPRRRHSINLLEEDNQKPNVCRI-----CGK 257

Query: 220 DKCTPQTEKNEHADGSSTEPNRTVPCNK 247
               P T K      S  +P R + CNK
Sbjct: 258 SYARPSTLKTHLRTHSGEKPYRCIDCNK 285


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 225 QTEKNEHADGSSTEPNRTVPCNKPPAGPGQKEPATDLQPTPPGTGGKLALNQGKKE-IMQ 283
           Q ++N+ A  ++T P +       PA   +        PTP  +     +N  K+   MQ
Sbjct: 187 QQQQNKSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQ 246

Query: 284 ALETSMNLKVLILPNGPQGQNCFCTCDNTSAP 315
           +   + N    I P+G    +   T   +++P
Sbjct: 247 SYRPTGN----ITPHGSNTSSLITTPSPSASP 274


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 218  NKDKCTPQTEKNEHADGSSTEPNRTVPC--NKPPAGPGQKEPATD 260
            NKD C        H D SST    T P   +KP      +   TD
Sbjct: 2272 NKDHCDWPENTECHPDASSTMAPSTTPMVPDKPVTTTTSRPIGTD 2316


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 219 KDKCTPQTEKNEHADGSSTEPNRTVPCNK 247
           K    P T K      S  +P R + CNK
Sbjct: 1   KSYARPSTLKTHLRTHSGEKPYRCIDCNK 29


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 234 GSSTEPNRTVPCNKPPAGP 252
           GS T+P +TV  +K P  P
Sbjct: 34  GSITQPTKTVIQSKRPLAP 52


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.302    0.121    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,377
Number of Sequences: 317
Number of extensions: 3231
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 330
length of database: 114,650
effective HSP length: 57
effective length of query: 273
effective length of database: 96,581
effective search space: 26366613
effective search space used: 26366613
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
S2: 43 (21.4 bits)