GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001611-TA|BGIBMGA001611-PA|undefined
         (330 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.30 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    26   0.39 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.91 
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    25   1.2  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 26  SKLESDSQMKTTEKGPSNIATSVTNV-MEQNTEI 58
           SK E  S+  T  + P+N+AT+VT++ ++Q+T I
Sbjct: 715 SKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 13/30 (43%), Positives = 13/30 (43%)

Query: 237 TEPNRTVPCNKPPAGPGQKEPATDLQPTPP 266
           T P R     KP A PG   P    QP PP
Sbjct: 26  TRPTRLRREAKPEAEPGNNRPVYIPQPRPP 55



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           KP A PG   P    QP PP
Sbjct: 260 KPEAKPGNNRPVYIPQPRPP 279



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 212 PTTPEINKDKCTPQTEKNEHADGSSTEPNRTVPCNK----PPAGPGQKEPATDLQPTPP 266
           PT P   + +  P+ E   +      +P    P  +    P A PG   P    QP PP
Sbjct: 25  PTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 83



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 120 EPEAEPGNNRPVYIPQPRPP 139



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 176 EPEAEPGNNRPVYIPQPRPP 195



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 204 EPEAEPGNNRPVYIPQPRPP 223



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 232 EPEAEPGNNRPVYIPQPRPP 251


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 13/30 (43%), Positives = 13/30 (43%)

Query: 237 TEPNRTVPCNKPPAGPGQKEPATDLQPTPP 266
           T P R     KP A PG   P    QP PP
Sbjct: 27  TRPARLRREAKPEAEPGNNRPIYIPQPRPP 56



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 184 RSVPESSTAPTKTNPAETATPKSNIKTVPTTPEINKDKCTPQTEKNEHADGSSTEPNRTV 243
           R   ES   P    P     P+      P  P + ++   P+ E   +      +P    
Sbjct: 89  RREAESEAEPGNNRPVYIPQPR------PPHPRLRRE---PEAEPGNNRPVYIPQPRPPH 139

Query: 244 PC--NKPPAGPGQKEPATDLQPTPP 266
           P    +P A PG   P    QP PP
Sbjct: 140 PRLRREPEAEPGNNRPVYIPQPRPP 164



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 212 PTTPEINKDKCTPQTEKNEHADGSSTEPNRTVPCNK----PPAGPGQKEPATDLQPTPP 266
           PT P   + +  P+ E   +      +P    P  +    P A PG   P    QP PP
Sbjct: 26  PTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPP 84


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 237 TEPNRTVPCNKPPAGPGQKEPATDLQPTPP 266
           T P R     +P A PG   P    QP PP
Sbjct: 27  TRPTRLRREAEPEAEPGNNRPVYIPQPRPP 56



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 212 PTTPEINKDKCTPQTEKNEHADGSSTEPNRTVPCNK----PPAGPGQKEPATDLQPTPP 266
           PT P   + +  P+ E   +      +P    P  +    P A PG   P    QP PP
Sbjct: 26  PTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 84



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 93  EPEAEPGNNRPVYIPQPRPP 112



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 121 EPEAEPGNNRPVYIPQPRPP 140


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           KP A PG   P    QP PP
Sbjct: 8   KPEAEPGNNRPVYIPQPRPP 27



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           KP A PG   P    QP PP
Sbjct: 148 KPEAEPGNNRPVYIPQPRPP 167



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 36  EPEAEPGNNRPVYIPQPRPP 55



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 64  EPEAEPGNNRPVYIPQPRPP 83



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 92  EPEAEPGNNRPVYIPQPRPP 111



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 120 EPEAEPGNNRPVYIPQPRPP 139



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 247 KPPAGPGQKEPATDLQPTPP 266
           +P A PG   P    QP PP
Sbjct: 176 EPEAEPGNNRPVYIPQPRPP 195


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 202 ATPKSNIKTVPTTPEINKD 220
           ATPK +  ++ TTPEI K+
Sbjct: 277 ATPKGSKCSMITTPEIKKE 295


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 182 TTRSVPESSTAPTKTNPAETATPKSNIKTVPTTPEINKDK 221
           TT +   ++T  T T    T TP +      TTP    D+
Sbjct: 656 TTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDE 695



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 168 ASTTKPLEATNVYQTTRSVPESSTAPTKTNPAETATPKSNIKTV 211
           A  T     T    TT +   ++T P  T  A   TP   +  V
Sbjct: 653 APATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEV 696



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 59  TPSEYIITTETTPKSTSGFTT 79
           TPS  + T+  T   T+G TT
Sbjct: 240 TPSAVVATSNATAAMTTGTTT 260


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 27 KLESDSQMKTTEKGPSNIATSVTNV 51
          +L +    KT +KGP N  T V  V
Sbjct: 47 ELSARPSFKTFDKGPKNYTTPVNFV 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.302    0.121    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,646
Number of Sequences: 429
Number of extensions: 3643
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of query: 330
length of database: 140,377
effective HSP length: 58
effective length of query: 272
effective length of database: 115,495
effective search space: 31414640
effective search space used: 31414640
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
S2: 44 (21.8 bits)