Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001610-TA|BGIBMGA001610-PA|IPR000591|Pleckstrin/
G-protein, interacting region, IPR000342|Regulator of G protein
signalling, IPR001770|G-protein, gamma subunit
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 31 0.35
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 31 0.46
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.61
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 30 0.81
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 30 1.1
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 29 2.5
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 2.5
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 29 2.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 2.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 3.3
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 28 3.3
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 28 4.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 28 4.3
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 5.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 7.6
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 7.6
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 27 7.6
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 10.0
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 27 10.0
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 27 10.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 10.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 10.0
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 10.0
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 27 10.0
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 10.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 10.0
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 31.5 bits (68), Expect = 0.35
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 559 AQAHVYHLMKSDSYSRYIRSEMYKEYM 585
AQ HV+ +M++ YS ++ SE+Y ++
Sbjct: 503 AQEHVFDIMQNSDYSEFVNSEIYYRFL 529
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 390 EQEKQSKDPLPLRRVRRWSF-GLHELLQDPAGKEHFAKFLSKEFSGENLN 438
E + +DPL RR SF ++ QD ++HFA+++S++ S N N
Sbjct: 716 EDDGNDEDPLSREMSRRLSFESANDSDQD--NRDHFAQYMSQQISDNNAN 763
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 30.7 bits (66), Expect = 0.61
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 275 QNNLKNNPIVTITNAQESEDEIQRNNQENVIKENGESSKEIPSGSTDPAVNIEQEIEAAR 334
+N +KN+ ++ E ED +++ K +GE K + + T + + QE +
Sbjct: 92 ENVVKNSVDESVAEKPEKEDLAVIESEDKAAKPDGEIKKNVETEVTSRSTS-SQEKDELE 150
Query: 335 KQLGMLRARMERRNIRVSKVAE 356
KQ+ L E+++ ++ ++ E
Sbjct: 151 KQVKTLHDLNEQKDKKIKELKE 172
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.81
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 263 AKRLKQCQDLVLQNNLKNNPIVTITNAQESEDEIQRNNQENVIK--ENGESSKEI--PSG 318
A+ L+ + +LQ++ K + E++DEI+ +E IK E G S++++ PS
Sbjct: 182 AEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSS 241
Query: 319 STDPA 323
S D A
Sbjct: 242 SDDKA 246
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 29.9 bits (64), Expect = 1.1
Identities = 64/288 (22%), Positives = 109/288 (37%), Gaps = 28/288 (9%)
Query: 2 NTTEKAPKPCQQGPSRNNSKCVKEEKDKEKRDNAITNLPPSVQALMAAIPSPEESPNYLI 61
+TT++ Q N S K + ++ P S + L++A+P+P E L
Sbjct: 297 DTTDEETPELQNNKLLNLSTPKKSFGQTPRIKTELSESPNSQRTLLSAVPTPLELSAELA 356
Query: 62 YKK-MEALIEK--MQDENTGVPVRTVKSFMTKVPSVFTGAELVSW-LARHLQLDEPWEPX 117
YK+ + +L + + D +TG+ K+ T V T + S+ L L + +P P
Sbjct: 357 YKEDLTSLASRANISDNSTGLTPTLAKA--TLAQPVSTVVSVASFELDPRLNITQPKPPV 414
Query: 118 XXXXXXXXXGYLFPID---DHCL-------TVKNDNTYYRFQTPYFWPSNQWEPENTDYA 167
+ ID H L K +NT P EP D
Sbjct: 415 MGTWAKEPNHLIGIIDGKHSHSLHHDKFDACTKGENTANNGYGPQTLNETSEEPSLDD-- 472
Query: 168 VYLCKRTMQNKARLELADYEAESLAKLQKMFSRKWEFIFMQAEAQSKVDK---KRDKLER 224
L +Q + +L + + S A+ SR WE I + +++ K +RD+L R
Sbjct: 473 -ILDTSLLQPSTQTDLQEENSVSFAQEDNSLSR-WEKIPIGTFRKNQYIKSMARRDELIR 530
Query: 225 K-----VLDSQERAFWDVHRPMPGCVNTTELDPRKLSRINALKAKRLK 267
+ ++E+ ++ N+ L P+ ALK K K
Sbjct: 531 DEWFTLAIKTREKRRHKINATGMTTTNSVPLRPKSRKARRALKKKARK 578
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 273 VLQNNLKNNPIVTITNAQESEDEIQRNNQENVIKENGESSKEIPSGST 320
++ NN K P+ T+ +A SE++ + ++ VIK+ ES+ IPS T
Sbjct: 123 IISNNDKILPMTTMASATASEEKNRIKDEALVIKKE-ESNVAIPSEVT 169
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 12 QQGPSRNNSKCVKEEKDKEKRDNAITNLPPSVQALMAAIPSPEESPNYLIYKKMEALIEK 71
++ PS + + EKDKE+ + ++ N S E+S +L +K +L+
Sbjct: 308 KKSPSSKRASSDEIEKDKEEEEGSVAN---EEDVAKRTFHSREQSLLFLRHKLQSSLLSP 364
Query: 72 MQDENTGVPVRTVKSFMTKVPSVFTGAEL 100
QD + V + V +++ K+ + F G ++
Sbjct: 365 KQDLSQ-VDYKLVHNYLDKLAN-FQGIDV 391
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 28.7 bits (61), Expect = 2.5
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 246 NTTELDPRKLSRINALKAKRLKQCQDLVLQNNLKNNPIVTITNAQESEDEIQRNNQENVI 305
N E+D ++L R L+A D + ++ KN+ + ES N+QE+V
Sbjct: 98 NDVEVDYQELLR-QTLEADEDASDSDDSVDSSNKNSEVSIKRRKTES------NSQESVD 150
Query: 306 KENGESSKEIPSGSTDPAVNIEQEIEAARKQLGMLRARMERRN 348
N ESS E S S D + +E+E +++ + E +N
Sbjct: 151 SSNSESSDE-ESDSEDETQQLLRELENIKQERKREQMLQEEKN 192
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 6 KAPKPCQQGPSRNNSKCVKEEKDKEKRDNAITNLPPSV 43
K KP Q+G SK +++ +++E+ +TNLP +
Sbjct: 564 KKRKPGQEGDVFKKSKPIEQHRNREELTVLVTNLPSDI 601
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 49 AIPSPEESPNYLIYKKMEALIEKMQDENTGVPVRTVKSFMTKVPSVFTGAEL 100
+I S ++SP I+++M ++K E + + + + V VF+G EL
Sbjct: 2329 SIRSSDDSPFLEIFRRMRKTLKKQTIEEYSINKKYLMQWFASVIHVFSGEEL 2380
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 279 KNNPIVTITNAQESEDEIQRNNQENVIKENGESSKEIPSGSTDPAVNIEQEIEAARKQLG 338
+N P T + + S ++ +NV E +S K+ S D N+++ A +
Sbjct: 234 RNTP--TFSFSSSSSQTSLKHKPKNVFAELNKSRKKNNKDSLDQGQNVKRPRSAVEDIIA 291
Query: 339 MLRARMERRNIRV 351
R +RRNI++
Sbjct: 292 QETMREKRRNIKL 304
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 581 YKEYMNGSKKKVCNFILTSGPPVV 604
+++++N +K CNFIL S PV+
Sbjct: 5 FEKHLNAVSRKCCNFILGSSIPVL 28
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 143 NTYYRFQTPYFWPSNQWEPENTDYAVYLCKRTMQNKARL---------ELADYEAESLAK 193
N YY Y W N WEPE + + + + +L + D EA+ + +
Sbjct: 38 NEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKR 97
Query: 194 -----LQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVL 227
Q+ RK E + + + K K R K R+++
Sbjct: 98 EKEILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIV 136
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 18 NNSKCVKEEKDKEKRDNAITNLPPSVQALMAAIPSPEESPN 58
NN K + KD EKR N ++ S Q + +A+ +PE + N
Sbjct: 25 NNLKSSPKNKDSEKRIN--NSIAESEQVVDSALSNPETNAN 63
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 294 DEIQRNNQENVIKENGESSKEIP-SGSTDPAVNIEQEIEAARKQLGMLRARMERRNIRVS 352
++++ N+E +K S+ P S DP + QE+ +KQ ML +++ N+ +
Sbjct: 1088 EQVEDLNKEIALKAGINESQPFPISEKEDP---LRQEVYVLKKQNAMLLTQLQSSNLNFA 1144
Query: 353 KV 354
++
Sbjct: 1145 EI 1146
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.1 bits (57), Expect = 7.6
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 3/130 (2%)
Query: 425 AKFLSKEFSGENLNFGTVENIFGTAENIFGTIENIFVTVENIFGTLENIFGTVENIFGTV 484
+K + F GTVE + TA I TI + V + F GTVE + T
Sbjct: 711 SKTFTSTFPANGTTSGTVEVVEPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTA 770
Query: 485 ENMTHDTVDADRFWLA---VQDLKALPIRCVAARARDIWKEFLAADAPSPINIDAASREL 541
+T + +++ D + + V A + + ++ P I A
Sbjct: 771 GTVTETVISGSVSFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTS 830
Query: 542 TRVQVESGTA 551
V+V TA
Sbjct: 831 GTVEVVEPTA 840
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 27.1 bits (57), Expect = 7.6
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 179 ARLELADYEAESLAKLQKMF-SRKWEFIFMQAEAQSKVDKKRDK---LERKVLDSQERAF 234
+R+E+ + SLAK + S K E ++A++ S K +++ LE K+ ++ A
Sbjct: 228 SRIEMLE---SSLAKSNSLLDSSKSEMEALKAKSISDATKHKNEIFQLEEKLHEASHEAE 284
Query: 235 WDVHRPMPGCVNTTELDPRKLSRINALKAKRLKQCQDLVLQNNLKNNPIVTITNAQES 292
+ + EL+ N K LK Q+L++ + K IV + + +S
Sbjct: 285 ISIKKLNDAENRIKELENNPTLSFNPELEKNLKLMQELIVAESSKTQHIVELESCIDS 342
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 130 FPIDDHCLTVKNDNTYYRFQTPYFWPSNQWEPENTDYAVYLCKRTMQNKARLELA 184
+ +D+ L ++ ++++ RF YF + PEN+ +Y K L LA
Sbjct: 324 YEMDELRLIMEENSSFIRFPE-YFKEGGETSPENSKVKIYSSSIANSEKTALRLA 377
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.6 bits (56), Expect = 10.0
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 17/177 (9%)
Query: 228 DSQERAFWDVHRPMPGC--VNTTELDPRKLSRINALKAKRLKQCQDLVLQNNLKNNPIVT 285
++ + FW G V +LD +K I L + L + + +V
Sbjct: 31 ENSSKIFWFCRSSADGGFDVGHLQLDAKKSDAIEILPISEFDPVRSLTTLGKEETDFLVD 90
Query: 286 ITNAQES---EDEIQRNNQE------NVIKENGESSKEIPSGSTDPAVNIEQEIEAARKQ 336
ES E EI + N+I S +P+ ++P + +I +
Sbjct: 91 AVFVSESNHHEKEILHRTCKRYRIPLNIIDNPSLCSFTLPATWSEPPL----QISLSTSS 146
Query: 337 LGMLRARMERRNIRVSKVAETFVSYCEQYAEYDAFLTPPEWPNPWINYTTELWEQEK 393
G A+ R++ VS + E++ A PE WIN+ ++ W EK
Sbjct: 147 NGCRLAQRLLRHV-VSSLPSGMPEAIERFGRVRAITKTPE-KKQWINHVSDFWPLEK 201
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 10.0
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 179 ARLELADYEAESLAKLQKMFSRKWEFIFMQAEAQ-SKVDKKRDKLERKVLDSQERAFWDV 237
A L + E LA L + + + + E SK+ KR + + + L + R+ + +
Sbjct: 216 ALLMAGNAEQMGLATLANLGEQTEKIATAEKELDISKIHAKRAEEQARELKTLNRSMFAI 275
Query: 238 HRPMP-GCVNTTELDPRKLSRINALKAKRLKQCQDLVLQNNLKNNPIVTITNAQESEDEI 296
H P P G + +L+ AKR + QD +L I A +D +
Sbjct: 276 HVPKPWGKAKRVAAEEARLA------AKRDAERQDEMLNRQFAYRSQKRIDQAM--KDNM 327
Query: 297 QRNNQENVIKENGESSKEIPSGSTDPAVN---IEQEIEAARKQLGMLRARME 345
+ N ++ K G S E +P +E+EI+ Q+G L R++
Sbjct: 328 KSNKKKGDSK--GVSILERSHYQFEPDAEDDAMEKEIDGNLDQIGALATRLK 377
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 10.0
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 286 ITNAQESEDEIQRNNQENVIKENGESSKEIPSGSTD-PAVNIEQEIEAARKQLGMLRARM 344
I Q EDE + + E V+ + E S STD + E+ + ++L LR R
Sbjct: 126 IARRQRDEDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDPETERLNDLRERE 185
Query: 345 E-----RRNIRVSKVAETFVSYCEQYAEYDAFLTP-PEWPNPWINYTTELWEQEKQ 394
E RR + E Y +++ + L + P W +EL ++ +Q
Sbjct: 186 EFEERLRRKDLEAATNEFVEDYSSKFSSEELALRKLADDPESWRKLASELRKKSRQ 241
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 178 KARLELADYEAESLAKLQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQE 231
K+++ + D +E L KL F+ K + + E ++KKR LE + +E
Sbjct: 288 KSQMTITDESSEDLEKLHSNFAEK---VKEEQELYKSLEKKRSDLESLLKSRRE 338
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.6 bits (56), Expect = 10.0
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 301 QENVIKE-NGESSKEIPSGSTDPAVNIEQE-----IEAARKQLGMLRARMER----RNIR 350
Q N+I+ G +I +T+ N+ Q +E ++ G++RA +R N
Sbjct: 463 QVNIIRSWVGNEEMDITKNTTNSINNVSQISNGPFVERFYRETGLIRAFEQRIMTNMNSV 522
Query: 351 VSKVAETFVSYCEQYAEY 368
+SKV T V+Y + Y
Sbjct: 523 LSKVCNTIVTYADDLKSY 540
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 492 VDADRFWLAVQDLKALPIRCVAARARDIWKEFLAADAPSPINID 535
V + L + L L +RCV + A +EFL A P IN D
Sbjct: 247 VAEENIMLTMCPLSNLKLRCVNSIAELPVREFLEAGVPFSINCD 290
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 10.0
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 236 DVHRPMPGCVNTTELDPRKLSRINALKAKRLKQCQDLVLQNNLKNNPIVTITNAQES--- 292
++ P+P T PRK+S N A+RL + LKN +I N ++
Sbjct: 379 NISTPLP---EPTPGQPRKVSGHNPPSARRLPSASSVKFNEKLKNASKQSIQNENKASYS 435
Query: 293 ---EDEIQRNNQENVIKENGESSKEIPSGSTDPAVNIE 327
+ EIQ +++ + E+ + + NIE
Sbjct: 436 SYEDSEIQNDDETRTVGTPTETISVVRLRRSSSQSNIE 473
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 10.0
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
Query: 172 KRTMQNKARLELADYEAESLAKLQKMFSRKWEFIFMQAEAQSKVDKKRDKLERKVLDSQE 231
KR K + +L A S +K + S + + E S++ KK +RK+ ++ +
Sbjct: 152 KRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADE--SELSKKYTS-DRKIRNASK 208
Query: 232 RAFWDVHRPMPGCVNTTELDPRKLSRINALKAKRLKQCQDLVLQNNLKNNPIVTITNAQE 291
+A ++HR T L P + K+ ++ + KN+ + N
Sbjct: 209 KALLELHRNTARLTRETALKPE-------VVVKKKVTLREFFQKIGFKNDN--QLENKAI 259
Query: 292 SEDEIQRNNQENVIKENGESSKEIPSG 318
SE+E NV KE + S + +G
Sbjct: 260 SEEEANSTEPPNVEKEEPKPSVDRSTG 286
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,409
Number of Sequences: 5004
Number of extensions: 127342
Number of successful extensions: 514
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 49
length of query: 608
length of database: 2,362,478
effective HSP length: 77
effective length of query: 531
effective length of database: 1,977,170
effective search space: 1049877270
effective search space used: 1049877270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -