GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001609-TA|BGIBMGA001609-PA|IPR002618|UTP--glucose-1-
phosphate uridylyltransferase
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)             182   6e-46
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.29 
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)                 32   1.2  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.2  
SB_11600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    31   2.7  
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   31   2.7  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  
SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)                  29   8.4  

>SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  182 bits (443), Expect = 6e-46
 Identities = 114/268 (42%), Positives = 159/268 (59%), Gaps = 48/268 (17%)

Query: 224 LYRALKTQGILDDISVRGIQHLHAHSVDNILIKVADPVFIGYCKSKNADCAAK------- 276
           LY+ L+ + I  D+  RG++++H + VDNIL+K+ADPVFIG+C  K ADC AK       
Sbjct: 134 LYQ-LQAERIRKDMEKRGVEYIHVYGVDNILVKMADPVFIGFCIGKGADCGAKLLKGTLC 192

Query: 277 ---VVQKSSPSEPVGVVCRVNGHYKVVEYSELTDEASERRNPDGRLTFSAGNICNHYFSA 333
              VV+K+ P+E VGVVC  +G Y+VVEYSE+++ A+E+R+ DG+LTF AGNI NH+F+ 
Sbjct: 193 HQQVVEKTIPTEAVGVVCLCDGKYEVVEYSEISNNAAEKRDADGKLTFRAGNIANHFFTF 252

Query: 334 DFLRKI-SNFETKLKLHIAKKKIPYIDENGVRQKPNEPNGIKMEKFIFDVFEFAENFICL 392
            FL  I    E +L  HIAKKKIP++D++G           K+            N   L
Sbjct: 253 KFLEAICREHENELPFHIAKKKIPHVDDSG-----------KI------------NLAVL 289

Query: 393 EVARDTEFSALKNADTAKKDCPSTAREDLLQLHKKYIRQAGGEVADDADIEISPLLSYGG 452
           EV R+ EFS LKNA  + K+ P TAR+  + LH ++I  AGG+  D          S GG
Sbjct: 290 EVLREDEFSPLKNAPGSAKESPETARQMTIDLHYRHIIAAGGKFVD----------SDGG 339

Query: 453 ENLDSIVNGKVFTAG-PFHLKSPQELSS 479
             LD +V  + F+A    HLK+  E +S
Sbjct: 340 --LDDVVKDRRFSAAEELHLKAQLEENS 365



 Score =  117 bits (281), Expect = 2e-26
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 3   ETLLRNLKDHGQEHLIKYWSVLSEEQRKQLSDEILKLDLTEVHATFSRAIESTXXXXXXX 62
           E L ++LK+HGQE L+K+W+ L E Q+K+  DE+  +D  + + +F+ A E         
Sbjct: 4   EKLRKDLKEHGQEQLLKFWNELDENQQKKFYDELKGIDYAKTNRSFTVATEDAENHRGEK 63

Query: 63  XXXXXXXXX-SHYESVPNLTPDKIEEYENIGFKEICNGKVGVLLLAGGQATRLGFGHPKG 121
                      H+ SV     + ++ +E  G +EI   KV VLLLAGGQ TRLG  +PKG
Sbjct: 64  KDERIKPIPPEHFGSVAR-AGNNLKVWEEKGLQEIGESKVAVLLLAGGQGTRLGVSYPKG 122

Query: 122 MYDVGLPSRKTLFQIQAERILRVQQMAAEKY 152
           MY+VGLPS KTL+Q+QAERI +  +    +Y
Sbjct: 123 MYNVGLPSGKTLYQLQAERIRKDMEKRGVEY 153


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 331 FSADFLRKISNFETKLKLHIAK----KKI-PYIDENGVRQKPNEPNGIKMEKFIFDVFEF 385
           F   F+ +++N +  L  H  K    K I P IDE  +  +P   +  +ME  + D    
Sbjct: 277 FGQQFVDRVANPKDILLFHRKKVQQAKGIRPDIDEKLLHLRPEALDNTRMEDLVKDYLRS 336

Query: 386 AENFICLEVARDTEFS-ALKN-ADTAKKDCPSTAREDLLQLHKKYIRQAGGEVADDAD 441
            +N + L++  +   + AL+   D  +KD   T     L++ +K+++Q     A++ +
Sbjct: 337 KDNALDLQILSENRMAQALREFVDKDEKDAIQTLVSWQLEVTQKHLKQRNNVTAENIE 394


>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
          Length = 458

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 400 FSALKNADTAKKDCPSTAREDLLQLHKK---YIRQAGGEVADDADIEISPLLSYGGENLD 456
           FSA+ N + AK++   TA + L +L K    + R          D  I P+L YG E  D
Sbjct: 351 FSAVGNFNLAKEELKKTALKALFKLRKDLGIHFRSDINLTLKLFDALIKPILLYGSEVWD 410

Query: 457 SIVNGKVFT 465
           S+ N    T
Sbjct: 411 SLENNSKVT 419


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 300 VEYSELTDEASERRNPDGRLTFSAGNICNHYFS-ADFLRKISNFETKLKLHIAKKKIPYI 358
           VEY E  DE  E R+ D            H  S +D+L ++  F      H+A K I  +
Sbjct: 270 VEYEERNDEHEEDRHEDNDEEGDIAAESYHSMSFSDYLAEVDRFTDTSTNHVAIKLIDTV 329

Query: 359 D-ENGVRQKPNEP 370
           D E G   KP  P
Sbjct: 330 DLEGGPVGKPVVP 342


>SB_11600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 428 YIRQAGGEVADDADIEISPLLSYGGENLDSIVNGKVF 464
           Y+R  GGE   +   EI PL+  GG+   S + GK F
Sbjct: 334 YLRLFGGENDTETRREIFPLIDEGGDVFASFLRGKTF 370


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 296 HYKVVEYSELTDEASERRNPDGRLTFSAGNICNHYFSADFLRKISNFETKLKLHIAKKK 354
           HYK V  + LTD     R+ +    FS   I +  +   +L  +S+ ET  K+   ++K
Sbjct: 936 HYKNVHSTPLTDSKGNDRDNEEIKKFSQAFIVDEKYVRSYLEHLSSLETISKIREKQRK 994


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 296  HYKVVEYSELTDEASERRNPDGRLTFSAGNICNHYFSADFLRKISNFETKLKLHIAKKK 354
            HYK V  + LTD     R+ +    FS   I +  +   +L  +S+ ET  K+   ++K
Sbjct: 1287 HYKNVHSTPLTDSKGNDRDNEEIKKFSQAFIVDEKYVRSYLEHLSSLETISKIREKQRK 1345


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 128 PSRKTLFQIQAERILRVQQMAAEKYGNEGKITWYI--MTSEHTKAPTANYFKSHSYFGLN 185
           P  K  F I+   +  ++Q+  E  G E K  W++  +   +TK      F  H +  L 
Sbjct: 209 PGCKETFNIKGPDLGELRQLTVEHDGKERKQGWFLEDIDVSNTKTGQRWIFPCHQWLSLY 268

Query: 186 END 188
           E D
Sbjct: 269 EGD 271


>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
          Length = 461

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 376 EKFIFDVFEFAENFICLEVARDTEFSALKNADTAKKDCPSTAREDLLQLHKKYI 429
           ++FI  V EF E    LE++ +  F    +  + KK C   A++D++++ +KYI
Sbjct: 228 KRFIECVHEFFEMTQNLELSMEKSFFEFMDTPSYKKFC--RAQDDVMRIGQKYI 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,686
Number of Sequences: 59808
Number of extensions: 669239
Number of successful extensions: 1282
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 12
length of query: 486
length of database: 16,821,457
effective HSP length: 85
effective length of query: 401
effective length of database: 11,737,777
effective search space: 4706848577
effective search space used: 4706848577
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)