Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001608-TA|BGIBMGA001608-PA|IPR007754|N-
acetylglucosaminyltransferase II
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_646| Best HMM Match : MGAT2 (HMM E-Value=2.1)                       59   5e-09
SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.70 
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       31   1.6  
SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07)                    30   3.8  
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)               29   5.0  
SB_8368| Best HMM Match : VWA (HMM E-Value=0)                          29   6.6  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  

>SB_646| Best HMM Match : MGAT2 (HMM E-Value=2.1)
          Length = 298

 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 9   NSVFENNKVHTRLTYLRHLIVSLAQARDIERTLLVFSHDYYNEEINSLVRSIDFTK 64
           NS+    +VH R  Y   LI SL +AR I+ TLLV SHD+YNEE++ + ++IDF K
Sbjct: 148 NSLVIIVQVHNRPDYFSQLIRSLGRARGIQNTLLVISHDFYNEEMDKIAKAIDFCK 203


>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 32.3 bits (70), Expect = 0.70
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 256 FGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFKVIMSKGPRVFHIG 312
           + FN + W+ I +++++  AY + +W  +L  L    +N E  +++     R++H+G
Sbjct: 184 YSFNVTAWNYIKKVEKESVAYTEKDWPLALGLLLFYDRN-ETVQIVAPTISRIWHVG 239


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 238  NTQKVDITPWHSSM-----HNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNR 292
            +T   D+TP+  S+     HN    F   ++ NI  IQ+  C         +L+  +   
Sbjct: 1669 STTMYDVTPYEPSLMENTCHNFQTDFFNGIFKNIRSIQQTACRLLSSAGYSNLIECNSFL 1728

Query: 293  KNQEKFKVIMSKG---PRVF--HIGECGIHHKKSNCNASSVISK 331
                K+   +      PRVF  +I EC     K+NCN+ S   K
Sbjct: 1729 SRLYKYDTGLDSSMVCPRVFLKNIAECK-RWVKANCNSLSANEK 1771


>SB_53819| Best HMM Match : HECT (HMM E-Value=4e-07)
          Length = 279

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 37  IERTLLVFSHDYYNEEINSLVRSIDFTKVMQIFYPYSIQTHPNEFPGLDPNDCPRDVKMQ 96
           ++R L   ++ Y    +  + R +  +      Y YS  T P     L  +  P    + 
Sbjct: 81  VQRELATSTYQYSTHTVPQVQRELATST-----YQYSTHTVPPVQRELATSTYPYRTHIV 135

Query: 97  QAIKLKCINALHPDLHGHYREAKYTQTKHHWWWKANRIFNQ 137
             ++ +   + +P    H +  KY +    W+W+A R F+Q
Sbjct: 136 PQVQRELATSTYP-YSTHIQYHKYNENSIQWFWRALRSFDQ 175


>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 327 SVISKVQKLLQNAKPYLFPG----SVTATVTAGGAKHNKKLTKGNGGWGDIRDQELCTNM 382
           SV SK+  L ++    L+PG     +++T      KHN +LTK  G + +I  +   T  
Sbjct: 478 SVHSKILSLPRDFT--LYPGHDYTGMSSTTVDEELKHNPRLTKSKGDFVEIMSKLGLTKP 535

Query: 383 TRIGR 387
            RIGR
Sbjct: 536 KRIGR 540


>SB_8368| Best HMM Match : VWA (HMM E-Value=0)
          Length = 771

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 12  FENNKVHTRLTYLRHLIVSLAQARDIERTLLVFSHDYYNEEINSLVRSI 60
           F  N +H        +  SL Q  D  +TL  F H Y  +E+  LV+++
Sbjct: 639 FTQNLIHALSDSENAIRFSLMQYGDTPKTLATFRHLYAEKELRGLVKAM 687


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 133 RIFNQLEC----TTNHTGMVVFLEEDHYVAEDFIYMLNLLRATADRSCP 177
           R F+QL C    +TN     +  EE+ YV   FI M  LL   + R+CP
Sbjct: 411 RFFSQLPCVQAESTNVFAHSLLPEENAYVFPPFILMGPLLGHLSKRACP 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,592
Number of Sequences: 59808
Number of extensions: 576490
Number of successful extensions: 1405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 10
length of query: 396
length of database: 16,821,457
effective HSP length: 84
effective length of query: 312
effective length of database: 11,797,585
effective search space: 3680846520
effective search space used: 3680846520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)