Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001608-TA|BGIBMGA001608-PA|IPR007754|N-
acetylglucosaminyltransferase II
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05320.1 68415.m00560 beta-1,2-N-acetylglucosaminyltransferas...   131   9e-31
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi...    30   2.3  
At3g31540.1 68416.m04025 hypothetical protein                          30   3.1  
At5g64030.1 68418.m08039 dehydration-responsive protein-related ...    29   4.1  
At4g37650.1 68417.m05325 short-root transcription factor (SHR)         29   5.4  
At4g04690.1 68417.m00685 F-box family protein (FBX15) contains F...    28   9.4  

>At2g05320.1 68415.m00560 beta-1,2-N-acetylglucosaminyltransferase
           II identical to beta-1,2-N-acetylglucosaminyltransferase
           II GI:10183645 from [Arabidopsis thaliana]
          Length = 430

 Score =  131 bits (316), Expect = 9e-31
 Identities = 65/163 (39%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 17  VHTRLTYLRHLIVSLAQARDIERTLLVFSHDYYNEEINSLVRSIDFTKVMQIFYPYSIQT 76
           VH R  Y R  + SL++ + I  TLL+ SHD Y EE+N +V SI F +V QIF PYS   
Sbjct: 105 VHNRAQYFRVTVESLSKVKGISETLLIVSHDGYFEEMNRIVESIKFCQVKQIFSPYSPHI 164

Query: 77  HPNEFPGLDPNDCPRDVKMQQAIKLKCINALHPDLHGHYREAKYTQTKHHWWWKANRIFN 136
           +   FPG+  NDC    K  +A K  C    +PD +G++R  K    KHHWWW  N +++
Sbjct: 165 YRTSFPGVTLNDCKN--KGDEA-KGHCEG--NPDQYGNHRSPKIVSLKHHWWWMMNTVWD 219

Query: 137 QLECTTNHTGMVVFLEEDHYVAEDFIYMLNLLRATADRSCPQC 179
            LE T  H G ++F+EEDH++  +    +  L       CP C
Sbjct: 220 GLEETKGHEGHILFIEEDHFLFPNAYRNIQTLTRLKPAKCPDC 262



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 11/142 (7%)

Query: 251 MHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFKVIMSKGPR--V 308
           M N+G+ FNRSVW NI +   +FC +DDYNWD ++            + +   +GPR   
Sbjct: 287 MGNVGYSFNRSVWENIHQKAREFCFFDDYNWDITMWATVFPSFGSPVYTL---RGPRTSA 343

Query: 309 FHIGECGIHH---KKSNCNASSVISKVQKLLQNAKPYLFPGSVTATVTAGGAKHNKKLTK 365
            H G+CG+H     + +C  + V++   K             V       G K      +
Sbjct: 344 VHFGKCGLHQGRGDEGDCIDNGVVNIEVKETDKVVNIKEGWGVRVYKHQAGYKAG---FE 400

Query: 366 GNGGWGDIRDQELCTNMTRIGR 387
           G GGWGD RD+ LC +   + R
Sbjct: 401 GWGGWGDDRDRHLCLDFATMYR 422


>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 889

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 223 QDTQWNFQVYPNLYGNTQKVDITPWHSSMHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWD 282
           Q  Q + Q+  N Y + + + +   H ++H     F+R++   +  I + F  +D ++W 
Sbjct: 287 QAKQVHAQLVVNRYNHLEPILV---HQTLH-FTKEFSRNIVTYVKRILKGFNGHDSFSWG 342

Query: 283 YSLLHLSQNRKNQEKFKV 300
             +  LSQ+RK +E   V
Sbjct: 343 CLVRFLSQHRKFKETVDV 360


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 102 KCINALHPDLHGHYREAKYTQTKHHWWWKANRIFNQLECTTNHTGMVVFLEEDHYVAEDF 161
           KC   L P L       KY +T  H+ W    + N++E   N    +   E +  +  +F
Sbjct: 486 KCAGCLLPPLDTLLESRKYDETTSHFLWVVGSM-NRMEAYVNKENALKLAESNLRIDSEF 544

Query: 162 IYMLNLL 168
           +    +L
Sbjct: 545 VRCKRML 551


>At5g64030.1 68418.m08039 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 829

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/84 (23%), Positives = 36/84 (42%)

Query: 294 NQEKFKVIMSKGPRVFHIGECGIHHKKSNCNASSVISKVQKLLQNAKPYLFPGSVTATVT 353
           N +KF+    + P     G+      K + ++S   ++ +K  +  K    P S T + T
Sbjct: 72  NGQKFEDAPVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSET 131

Query: 354 AGGAKHNKKLTKGNGGWGDIRDQE 377
            GG          NGG GD+ +++
Sbjct: 132 EGGEDQKDDSKSENGGGGDLDEKK 155


>At4g37650.1 68417.m05325 short-root transcription factor (SHR) 
          Length = 531

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 62  FTKVMQIFYPYSIQTHPNEFPGLDPNDCPRDVKMQQAIKLKCINALH 108
           F ++M + + ++I  H  +    D N+   DVK  + + + C+ A+H
Sbjct: 318 FARLMGVPFKFNIIHHVGDLSEFDLNEL--DVKPDEVLAINCVGAMH 362


>At4g04690.1 68417.m00685 F-box family protein (FBX15) contains
           F-box domain PF:00646
          Length = 378

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 259 NRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFKVIMSKGPRVFHIGECGIHH 318
           N +VW+ + +  +     D Y ++     +  +   +E +K++   GP  F   EC I+ 
Sbjct: 119 NLAVWNPVTKKIKWIEPLDSY-YETDYFGIGYDNTCRENYKIVRFSGPMSFDDTECEIYE 177

Query: 319 KKSN 322
            KS+
Sbjct: 178 FKSD 181


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,763
Number of Sequences: 28952
Number of extensions: 406669
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 7
length of query: 396
length of database: 12,070,560
effective HSP length: 83
effective length of query: 313
effective length of database: 9,667,544
effective search space: 3025941272
effective search space used: 3025941272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)