GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001608-TA|BGIBMGA001608-PA|IPR007754|N-
acetylglucosaminyltransferase II
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   1.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   2.0  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    28   2.0  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    27   6.1  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    27   6.1  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 9    NSVFENNKVHTRLTYLR-HLI----VSLAQARDIERTLLVFSHDYYNEEINSLVRSIDFT 63
            NS  ENNK   R+  L  HL       LAQ R++E+T ++ S    + E+  L+   +  
Sbjct: 941  NSEQENNKFRERIAELESHLSNYAEAKLAQERELEQTRVLISDQSQDGELKELLEEKENA 1000

Query: 64   KVM 66
             +M
Sbjct: 1001 LIM 1003


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 2   SVRFDNKNSVFENNKVHTRLTYLRHLIVSLAQARDIERTLL---VFSHDYYNEEINSLVR 58
           S R D+K   F+ N++ TR+  L   +V L ++ DIE ++L   +    +  E ++   R
Sbjct: 302 SQRADDKE--FDVNQLETRILQLFSKVVQLCKSEDIEGSILNKDMTQLHHLLENLSKESR 359

Query: 59  SIDFTKVMQIFYPYS 73
                ++ Q++Y Y+
Sbjct: 360 LHILLQLSQLYYKYN 374


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 232 YPNLYGNTQKVDITPWHSSMHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQN 291
           +  L+   ++++  PW S  HN  + F    +     ++EQ     D+  +Y  L    +
Sbjct: 111 FTRLHEKMKELNPAPWDSFKHNSSYKFTFETFGTRRTMKEQLSIISDF--EYMQLQGPVS 168

Query: 292 RKN-QEKFKVIMSK-----GPRVFHIGECG 315
             N Q  F V+ ++     GP+V+    CG
Sbjct: 169 MHNPQHVFTVLENRRNNVEGPKVYFGHWCG 198


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 258 FNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFKVIM 302
           F RS + +++ I  +    D YN D   LHL+   ++ EK K+ +
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 103 CINALHPDLHGHYREAKYTQTKH----HWWWKANRIFNQLECTT---NHTGMVVFLE 152
           C+ A  P L   +   KY  TKH    H W K +     +  T+   N  G VVF+E
Sbjct: 24  CLKAAAPTLSMKWSAVKYYSTKHFTKEHEWVKVDGDVGTVGITSYAANALGEVVFVE 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,898
Number of Sequences: 5004
Number of extensions: 82799
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 6
length of query: 396
length of database: 2,362,478
effective HSP length: 74
effective length of query: 322
effective length of database: 1,992,182
effective search space: 641482604
effective search space used: 641482604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)