GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001608-TA|BGIBMGA001608-PA|IPR007754|N-
acetylglucosaminyltransferase II
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1085 + 33989863-33991179                                        126   2e-29

>02_05_1085 + 33989863-33991179
          Length = 438

 Score =  126 bits (305), Expect = 2e-29
 Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 5/168 (2%)

Query: 17  VHTRLTYLRHLIVSLAQARDIERTLLVFSHDYYNEEINSLVRSIDFTKVMQIFYPYSIQT 76
           VH R  YLR ++ SL++A  I   LL+ SHD Y  E++ +V++I F +V QIF PYS   
Sbjct: 114 VHNRPRYLRLVVDSLSRAHGIGEALLIVSHDGYFPEMDKIVQTITFCQVKQIFAPYSPHL 173

Query: 77  HPNEFPGLDPNDCPRDVKMQQAIKLKCINALHPDLHGHYREAKYTQTKHHWWWKANRIFN 136
            P  FPG+   DC    K   A +  C     PD +G++R  +    KHHWWW  N +++
Sbjct: 174 FPEAFPGVSSGDCQGKDK---AAEKHCQG--DPDQYGNHRSPRIVSLKHHWWWMMNTVWD 228

Query: 137 QLECTTNHTGMVVFLEEDHYVAEDFIYMLNLLRATADRSCPQCEIISL 184
            L+ T +  G ++F+EEDHY+  +      LL       CPQC  I+L
Sbjct: 229 GLDETRDFDGHILFIEEDHYIFPNAYRNAQLLVDLKPSKCPQCYAINL 276



 Score = 68.5 bits (160), Expect = 9e-12
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 251 MHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFKVIMSKGPR--V 308
           M N+G+ FNR+VW  I    +QFC +D+YNWD ++            + +   +GPR   
Sbjct: 296 MGNIGYAFNRTVWRKIHAKAKQFCTFDEYNWDITMWATVYPSFGSPVYSL---RGPRRSA 352

Query: 309 FHIGECGIHHKK--SNCNASSVISKVQKLLQNAKPYLFPGSVTATVTAGGAKHNKKLTKG 366
            H G+CG+H  +  SN    +  + VQ    +  P +        +     +  +   KG
Sbjct: 353 AHFGKCGLHQGQGLSNVCVDNGDATVQLDAIDKVPNIKANWPVHIIKR--QEGYQAGFKG 410

Query: 367 NGGWGDIRDQELC 379
            GGWGD RDQELC
Sbjct: 411 WGGWGDKRDQELC 423


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,486,098
Number of Sequences: 37544
Number of extensions: 468691
Number of successful extensions: 1069
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 2
length of query: 396
length of database: 14,793,348
effective HSP length: 84
effective length of query: 312
effective length of database: 11,639,652
effective search space: 3631571424
effective search space used: 3631571424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)