GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001608-TA|BGIBMGA001608-PA|IPR007754|N-
acetylglucosaminyltransferase II
         (396 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15128-1|AAA86956.1|  447|Homo sapiens beta-1,2-N-acetylglucosam...   220   6e-57
BC006390-1|AAH06390.1|  447|Homo sapiens mannosyl (alpha-1,6-)-g...   220   6e-57
BX119917-3|CAI39853.1|  709|Homo sapiens novel protein similar t...    34   0.76 

>U15128-1|AAA86956.1|  447|Homo sapiens
           beta-1,2-N-acetylglucosaminyltransferase II protein.
          Length = 447

 Score =  220 bits (538), Expect = 6e-57
 Identities = 87/184 (47%), Positives = 133/184 (72%)

Query: 16  KVHTRLTYLRHLIVSLAQARDIERTLLVFSHDYYNEEINSLVRSIDFTKVMQIFYPYSIQ 75
           +VH R  YLR L+ SL +A+ I+  L++FSHD+++ EIN L+  ++F  V+Q+F+P+SIQ
Sbjct: 123 QVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFSIQ 182

Query: 76  THPNEFPGLDPNDCPRDVKMQQAIKLKCINALHPDLHGHYREAKYTQTKHHWWWKANRIF 135
            +PNEFPG DP DCPRD+    A+KL CINA +PD  GHYREAK++QTKHHWWWK + ++
Sbjct: 183 LYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHFVW 242

Query: 136 NQLECTTNHTGMVVFLEEDHYVAEDFIYMLNLLRATADRSCPQCEIISLGTYLKTYQYHA 195
            +++   ++ G+++FLEEDHY+A DF ++   +     + CP+C+++SLGTY  +  ++ 
Sbjct: 243 ERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSFYG 302

Query: 196 NGDK 199
             DK
Sbjct: 303 MADK 306



 Score =  134 bits (325), Expect = 4e-31
 Identities = 61/152 (40%), Positives = 94/152 (61%), Gaps = 4/152 (2%)

Query: 234 NLYGNTQKVDITPWHSSMHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRK 293
           + YG   KVD+  W S+ HNMG    R+ +  ++E  + FC YDDYNWD++L +L+ +  
Sbjct: 299 SFYGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCL 358

Query: 294 NQEKFKVIMSKGPRVFHIGECGIHHKKSNCNASSVISKVQKLLQNAKPYLFPGSVTATVT 353
             + +KV++ + PR+FH G+CG+HHKK+ C  S+  ++++ LL N K Y+FP   T T++
Sbjct: 359 -PKFWKVLVPQIPRIFHAGDCGMHHKKT-CRPSTQSAQIESLLNNNKQYMFP--ETLTIS 414

Query: 354 AGGAKHNKKLTKGNGGWGDIRDQELCTNMTRI 385
                      + NGGWGDIRD ELC +  R+
Sbjct: 415 EKFTVVAISPPRKNGGWGDIRDHELCKSYRRL 446


>BC006390-1|AAH06390.1|  447|Homo sapiens mannosyl
           (alpha-1,6-)-glycoprotein
           beta-1,2-N-acetylglucosaminyltransferase protein.
          Length = 447

 Score =  220 bits (538), Expect = 6e-57
 Identities = 87/184 (47%), Positives = 133/184 (72%)

Query: 16  KVHTRLTYLRHLIVSLAQARDIERTLLVFSHDYYNEEINSLVRSIDFTKVMQIFYPYSIQ 75
           +VH R  YLR L+ SL +A+ I+  L++FSHD+++ EIN L+  ++F  V+Q+F+P+SIQ
Sbjct: 123 QVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFSIQ 182

Query: 76  THPNEFPGLDPNDCPRDVKMQQAIKLKCINALHPDLHGHYREAKYTQTKHHWWWKANRIF 135
            +PNEFPG DP DCPRD+    A+KL CINA +PD  GHYREAK++QTKHHWWWK + ++
Sbjct: 183 LYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHFVW 242

Query: 136 NQLECTTNHTGMVVFLEEDHYVAEDFIYMLNLLRATADRSCPQCEIISLGTYLKTYQYHA 195
            +++   ++ G+++FLEEDHY+A DF ++   +     + CP+C+++SLGTY  +  ++ 
Sbjct: 243 ERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSFYG 302

Query: 196 NGDK 199
             DK
Sbjct: 303 MADK 306



 Score =  134 bits (325), Expect = 4e-31
 Identities = 61/152 (40%), Positives = 94/152 (61%), Gaps = 4/152 (2%)

Query: 234 NLYGNTQKVDITPWHSSMHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRK 293
           + YG   KVD+  W S+ HNMG    R+ +  ++E  + FC YDDYNWD++L +L+ +  
Sbjct: 299 SFYGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCL 358

Query: 294 NQEKFKVIMSKGPRVFHIGECGIHHKKSNCNASSVISKVQKLLQNAKPYLFPGSVTATVT 353
             + +KV++ + PR+FH G+CG+HHKK+ C  S+  ++++ LL N K Y+FP   T T++
Sbjct: 359 -PKFWKVLVPQIPRIFHAGDCGMHHKKT-CRPSTQSAQIESLLNNNKQYMFP--ETLTIS 414

Query: 354 AGGAKHNKKLTKGNGGWGDIRDQELCTNMTRI 385
                      + NGGWGDIRD ELC +  R+
Sbjct: 415 EKFTVVAISPPRKNGGWGDIRDHELCKSYRRL 446


>BX119917-3|CAI39853.1|  709|Homo sapiens novel protein similar to
           multidomain presynaptic cytomatrix protein Piccolo; pi
           protein.
          Length = 709

 Score = 34.3 bits (75), Expect = 0.76
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 108 HPDLHGH-----YREAKYTQTKHHWW---WKANRIFNQLECTTNHTGMVV 149
           HPD  GH     +++ + TQ  HHW+   WK+   +  L  ++  TG  V
Sbjct: 248 HPDAQGHPAIPNHKDPESTQFSHHWYLTDWKSGDTYQSLSSSSTATGTTV 297


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,950,608
Number of Sequences: 224733
Number of extensions: 2336427
Number of successful extensions: 4340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4330
Number of HSP's gapped (non-prelim): 5
length of query: 396
length of database: 73,234,838
effective HSP length: 92
effective length of query: 304
effective length of database: 52,559,402
effective search space: 15978058208
effective search space used: 15978058208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)