GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001608-TA|BGIBMGA001608-PA|IPR007754|N-
acetylglucosaminyltransferase II
         (396 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   2.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   6.0  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 191 YQYHANGDKRKKQMTLNYIQQV 212
           Y+Y+ N + +K    +NYI+Q+
Sbjct: 96  YKYNYNNNCKKLYYNINYIEQI 117


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 191 YQYHANGDKRKKQMTLNYIQQV 212
           Y Y+ N   +K    +NYI+Q+
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQI 118


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 191 YQYHANGDKRKKQMTLNYIQQV 212
           Y Y+ N   +K    +NYI+Q+
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQI 118


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 191 YQYHANGDKRKKQMTLNYIQQV 212
           Y Y+ N   +K    +NYI+Q+
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQI 118


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 191 YQYHANGDKRKKQMTLNYIQQV 212
           Y Y+ N   +K    +NYI+Q+
Sbjct: 97  YNYNNNNYNKKLYYNINYIEQI 118


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 65  VMQIFYPYSIQTHPNEFPGLDPNDCPRD 92
           V Q +Y Y ++  P E+ G++    P D
Sbjct: 77  VEQSWYDYKLKWDPKEYGGVEMLHVPSD 104


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,146
Number of Sequences: 429
Number of extensions: 6224
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 6
length of query: 396
length of database: 140,377
effective HSP length: 59
effective length of query: 337
effective length of database: 115,066
effective search space: 38777242
effective search space used: 38777242
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)