GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001607-TA|BGIBMGA001607-PA|undefined
         (88 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   0.21 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   0.21 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   0.21 
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    19   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   7.8  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 27  YLTVHPKNSSVNSTER-AVSKNLTEIR 52
           +L++HP  +S+N   R   +K LT+IR
Sbjct: 255 FLSLHPAETSMNDANRNDCAKPLTQIR 281


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 27  YLTVHPKNSSVNSTER-AVSKNLTEIR 52
           +L++HP  +S+N   R   +K LT+IR
Sbjct: 255 FLSLHPAETSMNDANRNDCAKPLTQIR 281


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 27  YLTVHPKNSSVNSTER-AVSKNLTEIR 52
           +L++HP  +S+N   R   +K LT+IR
Sbjct: 255 FLSLHPAETSMNDVNRNDCAKPLTQIR 281


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase
          like protein E3 protein.
          Length = 138

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 66 NEDIYGP 72
          N+DIYGP
Sbjct: 90 NDDIYGP 96


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 49  TEIRKAIQRSNEAQYIHNEDIYGPVQN 75
           ++  KA+++ +E   +  ED++  + N
Sbjct: 322 SDATKALEKMSELSKLGGEDLFRTMAN 348


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.126    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,627
Number of Sequences: 317
Number of extensions: 680
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 114,650
effective HSP length: 47
effective length of query: 41
effective length of database: 99,751
effective search space:  4089791
effective search space used:  4089791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.6 bits)
S2: 37 (19.0 bits)