Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001607-TA|BGIBMGA001607-PA|undefined
(88 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03970.1 68418.m00377 F-box family protein predicted proteins... 30 0.22
At5g25470.2 68418.m03029 expressed protein 29 0.50
At5g25470.1 68418.m03028 expressed protein 29 0.50
At1g79570.1 68414.m09276 protein kinase family protein low simil... 28 0.66
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 1.2
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 1.2
At5g61300.1 68418.m07692 expressed protein 25 4.7
At1g73170.1 68414.m08466 expressed protein 25 4.7
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 25 4.7
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 25 4.7
At2g01800.1 68415.m00110 COP1-interacting protein-related simila... 25 6.2
At1g72250.1 68414.m08353 kinesin motor protein-related 25 6.2
At5g06510.3 68418.m00734 CCAAT-binding transcription factor (CBF... 25 8.2
At5g06510.2 68418.m00733 CCAAT-binding transcription factor (CBF... 25 8.2
At5g06510.1 68418.m00732 CCAAT-binding transcription factor (CBF... 25 8.2
>At5g03970.1 68418.m00377 F-box family protein predicted proteins,
Arabidopsis thaliana
Length = 418
Score = 29.9 bits (64), Expect = 0.22
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 5 ELMNSNDTSEQVLALVPPE-LHKYLTV 30
E++NSNDT ++L L+PPE ++K + V
Sbjct: 21 EVLNSNDTMCEILILLPPETIYKLILV 47
>At5g25470.2 68418.m03029 expressed protein
Length = 280
Score = 28.7 bits (61), Expect = 0.50
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 1 MFAEELMNSNDTSEQVLAL--VPPELHKYLTVHPKNSSVNSTERAVSKNLTEIRKAIQRS 58
MF E + ND +E + A V PE + PKNS +T + S + +E + +
Sbjct: 104 MFLEVQIFKNDGNEIIDAPPEVEPETEPFHPTTPKNSHKETTTASASASASEFSDNWRET 163
Query: 59 NEAQYIHNEDIY 70
+ I N ++Y
Sbjct: 164 HGCADIKNPELY 175
>At5g25470.1 68418.m03028 expressed protein
Length = 280
Score = 28.7 bits (61), Expect = 0.50
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 1 MFAEELMNSNDTSEQVLAL--VPPELHKYLTVHPKNSSVNSTERAVSKNLTEIRKAIQRS 58
MF E + ND +E + A V PE + PKNS +T + S + +E + +
Sbjct: 104 MFLEVQIFKNDGNEIIDAPPEVEPETEPFHPTTPKNSHKETTTASASASASEFSDNWRET 163
Query: 59 NEAQYIHNEDIY 70
+ I N ++Y
Sbjct: 164 HGCADIKNPELY 175
>At1g79570.1 68414.m09276 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925
Length = 1248
Score = 28.3 bits (60), Expect = 0.66
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 5 ELMNSNDTSEQVLALVPPELHKYLTVHPKNSSVNSTERAVSKNLTEIRKAIQRSN-EAQY 63
E+ N N E +A PP +L ++ N+T + + I + S E Q
Sbjct: 543 EVRNHNQVREMAVATTPPSQDAHLLPPSRDPRQNTTAKPATYRDAVITGQVPLSGIEDQL 602
Query: 64 IHNEDIYGPVQNDT 77
+ Y PV +D+
Sbjct: 603 STSSSTYAPVHSDS 616
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 6 LMNSNDTSEQVLALVPPELHKYL--TVHP-KNSSVNSTERAVSKNLTEIRKAIQRSNEAQ 62
LM+ T+E ++PP++ + L +H S + + + SKN + ++ S
Sbjct: 323 LMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLW 382
Query: 63 YIHNEDIYGPVQNDTIIIAIQVSLVD 88
I ED G ++ + ++Q + VD
Sbjct: 383 QIGCEDCLGIFSHNNYVTSVQFNPVD 408
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 6 LMNSNDTSEQVLALVPPELHKYL--TVHP-KNSSVNSTERAVSKNLTEIRKAIQRSNEAQ 62
LM+ T+E ++PP++ + L +H S + + + SKN + ++ S
Sbjct: 323 LMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLW 382
Query: 63 YIHNEDIYGPVQNDTIIIAIQVSLVD 88
I ED G ++ + ++Q + VD
Sbjct: 383 QIGCEDCLGIFSHNNYVTSVQFNPVD 408
>At5g61300.1 68418.m07692 expressed protein
Length = 557
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 28 LTVHPKNSSVNSTERAVSKNLTEIRKAIQRSNEAQY 63
L+V NSS N A++ LTE++ QR+N Y
Sbjct: 444 LSVPGFNSSNNDYPEAMTLQLTEMKSEEQRTNTPVY 479
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 10 NDTSEQVLALVPPELHKYLTVHPKNSSV 37
+D ++LALVP E+ + L HP+ S +
Sbjct: 78 DDELRRLLALVPEEIRQTLKEHPEISEL 105
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar
to Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 3 AEELMNSNDTSEQVLALVPPELHKYLTVHPK 33
A + + S+ +S Q A + P+L ++L +HPK
Sbjct: 29 ATDWILSHRSSPQSTATLQPKLDRFLRLHPK 59
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 34 NSSVNSTERAVSKNLTEIRKAIQRSNEAQY 63
N + TE SKNL RK +R N+A Y
Sbjct: 252 NKKLLPTENFKSKNLHSERKRRERINQAMY 281
>At2g01800.1 68415.m00110 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646, COP1-interacting protein 4.1
(CIP4.1) [Arabidopsis thaliana] GI:13160650
Length = 304
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 45 SKNLTEIRKAIQRSNEAQYIHNEDIYGPVQNDTIIIAIQVSLVD 88
+K L + + E Q+I + D GPV TI + +++ VD
Sbjct: 133 AKGLESGEGNVTKMGENQHICDADQEGPVNGHTIDVEVKLDPVD 176
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 25.0 bits (52), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 1 MFAEELMNSNDTSEQVLALVPPELHKYLTVHPKNSSVNSTERAVSKNLTEIRKAIQRSNE 60
MF + N ND SE + +L + + + P +++TE K + E K + +
Sbjct: 790 MFVQISPNENDQSETLCSLNFASRVRGIELGPAKKQLDNTELLKYKQMVEKWKQDMKGKD 849
Query: 61 AQYIHNED-IYG 71
Q E+ +YG
Sbjct: 850 EQIRKMEETMYG 861
>At5g06510.3 68418.m00734 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 220
Score = 24.6 bits (51), Expect = 8.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 31 HPKNSSVNSTERAVSKNLTE 50
HP+N ++NS+ A NL++
Sbjct: 161 HPENETINSSREANESNLSD 180
>At5g06510.2 68418.m00733 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 269
Score = 24.6 bits (51), Expect = 8.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 31 HPKNSSVNSTERAVSKNLTE 50
HP+N ++NS+ A NL++
Sbjct: 210 HPENETINSSREANESNLSD 229
>At5g06510.1 68418.m00732 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 269
Score = 24.6 bits (51), Expect = 8.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 31 HPKNSSVNSTERAVSKNLTE 50
HP+N ++NS+ A NL++
Sbjct: 210 HPENETINSSREANESNLSD 229
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.126 0.335
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,432
Number of Sequences: 28952
Number of extensions: 56351
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 15
length of query: 88
length of database: 12,070,560
effective HSP length: 67
effective length of query: 21
effective length of database: 10,130,776
effective search space: 212746296
effective search space used: 212746296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)
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