Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001606-TA|BGIBMGA001606-PA|undefined
         (226 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   1.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   5.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.9  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   7.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 77  FSYTNRHRSDLHLAEGPIPHYYRHSPLPFYTDP 109
           + Y N +   LH   GP  H+    P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 42  FSYTNRHRSDLHLAMG-PISHYYRPSPLRLCTDP 74
           + Y N +   LH   G PI H  RP P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRP-PILHDTQP 111


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 77  FSYTNRHRSDLHLAEGPIPHYYRHSPLPFYTDP 109
           + Y N +   LH   GP  H+    P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 42  FSYTNRHRSDLHLAMG-PISHYYRPSPLRLCTDP 74
           + Y N +   LH   G PI H  RP P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRP-PILHDTQP 111


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 77  FSYTNRHRSDLHLAEGPIPHYYRHSPLPFYTDP 109
           + Y N +   LH   GP  H+    P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 42  FSYTNRHRSDLHLAMG-PISHYYRPSPLRLCTDP 74
           + Y N +   LH   G PI H  RP P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRP-PILHDTQP 111


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 77  FSYTNRHRSDLHLAEGPIPHYYRHSPLPFYTDP 109
           + Y N +   LH   GP  H+    P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 42  FSYTNRHRSDLHLAMG-PISHYYRPSPLRLCTDP 74
           + Y N +   LH   G PI H  RP P+   T P
Sbjct: 79  YGYGNYYHPQLHSHHGPPIHHQIRP-PILHDTQP 111


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 95  PHYYRHSPLPFYTDP 109
           PH   +SP P Y DP
Sbjct: 22  PHNPAYSPPPSYCDP 36


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 8   SVLATDGSDLHLAE 21
           SV++TDGSD +  E
Sbjct: 304 SVISTDGSDFNATE 317


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/14 (42%), Positives = 12/14 (85%)

Query: 213 VRFELSQNSTTVRV 226
           ++FE++QNST + +
Sbjct: 347 IQFEMTQNSTNINL 360


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.140    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,198
Number of Sequences: 317
Number of extensions: 3609
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 11
length of query: 226
length of database: 114,650
effective HSP length: 55
effective length of query: 171
effective length of database: 97,215
effective search space: 16623765
effective search space used: 16623765
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)